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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919547
Clone id YMU001_000126_D03
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTTTTAAATTTTTCCCTCCAAACTCTTATCTCATATTTTCAATCATACACGTCGCTTGT
ACCACTCTGTGATCTGCCATTCGCACTTTAAAGGGTGCTGGCTTGAGATTCGTGATACCC
AGTCTCTGTTGGAGATGAACTCCCATTATGTTGACTCCTGCTCCTCCATCCAAGATAACA
CTTGAGAGAGGTTCCCACTGCTTCCTAACCTTGTAGTCCACTTGAATGAGTGGAACTTAA
TCATATCGGACGGCCGTCAGGTCCACTGTTCTGGCCTCCGCCTCAGCTTTCCTGCGCTGT
CTGATAAAGTTAGCCACTTCAGGCAAGGTTTTTATGATATCCTCCAGCTCTACAATCAAC
TTCTGAATT
■■Homology search results ■■ -
sp_hit_id A9WH12
Definition sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Align length 73
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919547|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D03.
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS...    32   0.98 
sp|Q74M64|DNLI_NANEQ DNA ligase OS=Nanoarchaeum equitans GN=lig ...    30   2.9  
sp|Q54KD5|Y7399_DICDI P17/29C-like protein DDB_G0287399 OS=Dicty...    30   4.9  
sp|Q8T2I5|LYSG3_DICDI Probable GH family 25 lysozyme 3 OS=Dictyo...    29   6.4  
sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subuni...    29   8.3  

>sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta
            OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
            / J-10-fl) GN=rpoB PE=3 SV=1
          Length = 1227

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = -1

Query: 261  PDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTETGYHESQASTL*SA 82
            PDGRP+ +   +  G+     +G  L+ +LGW +       ++P   G HE Q   L   
Sbjct: 997  PDGRPVDII-LNPIGVPSRMNIGQILETHLGWAAARLGFRVATPVFDGAHEDQIKDLLVQ 1055

Query: 81   NGRSQSGTSDVYD 43
             G    G   +YD
Sbjct: 1056 AGLPADGKVTLYD 1068


>sp|Q74M64|DNLI_NANEQ DNA ligase OS=Nanoarchaeum equitans GN=lig
           PE=3 SV=1
          Length = 567

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = -2

Query: 347 LEDIIKTLPEVANFIRQRRKA-----EAEARTVDLTAVRYD*VPLIQVDYKVRKQWE 192
           LED+ +  P+V N +R R KA     EAEA   D    ++  +P  ++  +V+++++
Sbjct: 270 LEDVTRQFPDVVNIVRNRVKANEIIFEAEAVGYDKKTNKF--LPFQKISQRVKRKYD 324


>sp|Q54KD5|Y7399_DICDI P17/29C-like protein DDB_G0287399
           OS=Dictyostelium discoideum GN=DDB_G0287399 PE=3 SV=1
          Length = 486

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/82 (29%), Positives = 35/82 (42%)
 Frame = -1

Query: 300 TAQES*GGGQNSGPDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTET 121
           T   S     N+    +    SS  SSG     + G+S     G +S +  +GSSS   +
Sbjct: 64  TVSSSGSASNNTSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSGNASSGSSSSGSS 123

Query: 120 GYHESQASTL*SANGRSQSGTS 55
           G     AS+  S+   S SG+S
Sbjct: 124 GSQSGNASSGTSSGSSSSSGSS 145



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -1

Query: 282 GGGQNSGPDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTETGYHESQ 103
           G GQ+SG        S+  SSG Q   A   S        S    +GSSS +++G   S 
Sbjct: 57  GTGQSSGTVSSSGSASNNTSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSGNASSG 116

Query: 102 ASTL*SA---NGRSQSGTS 55
           +S+  S+   +G + SGTS
Sbjct: 117 SSSSGSSGSQSGNASSGTS 135


>sp|Q8T2I5|LYSG3_DICDI Probable GH family 25 lysozyme 3
           OS=Dictyostelium discoideum GN=DDB_G0276439 PE=3 SV=1
          Length = 480

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = -1

Query: 276 GQNSGPDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTETGYHESQAS 97
           G  SG  G     SS   SG  G  A GTS        + S   GSS+ + +G ++S ++
Sbjct: 372 GSQSGSSGSQS-TSSGSQSGSSG--ATGTSSTASSTSATGSSSTGSSTGSSSGSNDSGSN 428

Query: 96  TL*SANGRSQSGTS 55
              S++G + SG+S
Sbjct: 429 DSGSSSGSNNSGSS 442


>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit
           alpha OS=Chlamydia muridarum GN=nrdA PE=3 SV=1
          Length = 1047

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 227 IQVDYKVRKQWEPLSSVILDGG 162
           +Q+D  VRK WEP+ S+I + G
Sbjct: 825 LQMDTSVRKDWEPIRSLIREHG 846
tr_hit_id A5B5K3
Definition tr|A5B5K3|A5B5K3_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 122
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919547|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D03.
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B5K3|A5B5K3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.099
tr|A5AMM4|A5AMM4_VITVI Putative uncharacterized protein OS=Vitis...    39   0.099
tr|A5AM19|A5AM19_VITVI Putative uncharacterized protein OS=Vitis...    39   0.13 
tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|A5C9C9|A5C9C9_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A5BXM3|A5BXM3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.22 
tr|A5C104|A5C104_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A5AKF5|A5AKF5_VITVI Putative uncharacterized protein OS=Vitis...    38   0.29 
tr|A9RE88|A9RE88_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.38 
tr|A5C5F5|A5C5F5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.38 
tr|A5BX61|A5BX61_VITVI Putative uncharacterized protein OS=Vitis...    37   0.38 
tr|A5AQU2|A5AQU2_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|A5ACK9|A5ACK9_VITVI Putative uncharacterized protein OS=Vitis...    37   0.49 
tr|A5B8R3|A5B8R3_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A5B2Y5|A5B2Y5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A5AWB6|A5AWB6_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A5AUP9|A5AUP9_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A5C748|A5C748_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A5C1Z8|A5C1Z8_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A5B402|A5B402_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A5AWH0|A5AWH0_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A5ASL2|A5ASL2_VITVI Putative uncharacterized protein OS=Vitis...    36   0.84 
tr|A7PFG5|A7PFG5_VITVI Chromosome chr11 scaffold_14, whole genom...    36   1.1  
tr|A5C706|A5C706_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5C4R5|A5C4R5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5C1L7|A5C1L7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5C0H6|A5C0H6_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BXL5|A5BXL5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B595|A5B595_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B066|A5B066_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  

>tr|A5B5K3|A5B5K3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012731 PE=4 SV=1
          Length = 1453

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANFIRQ----RRKAEAEAR---TVDLTAVRYD*VPLIQVD---- 216
           K+ + L DIIK +P  A F++     +R      +   T  ++A+     PL   D    
Sbjct: 339 KVNIPLLDIIKQVPTYAKFLKDLCTIKRGLTVNKKAFLTEQVSAILQCKSPLKYKDPGSP 398

Query: 215 -YKVRKQWEPLSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIE 39
              V  + + +  V+LD GA VN++   + ++LG+  LKP    + +AD  V     +IE
Sbjct: 399 TISVMIRGKVVEKVLLDLGASVNLLPYSVYKQLGLGELKPTEITLSLADRSVKILRAVIE 458

Query: 38  NM 33
           ++
Sbjct: 459 DV 460


>tr|A5AMM4|A5AMM4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005996 PE=4 SV=1
          Length = 2056

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 28/110 (25%), Positives = 52/110 (47%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYKVRKQWEPLS 183
           K+ + L D+IK +P  A F++            DL  ++      + V+ K     + + 
Sbjct: 533 KVNIPLLDMIKQVPTYAKFLK------------DLCTIKRG----LNVNKKASLTEQVME 576

Query: 182 SVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIENM 33
             +LD GA VN++   + ++LG+  LKP    + +AD  V     +IE++
Sbjct: 577 KALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSVKIPKGVIEDV 626


>tr|A5AM19|A5AM19_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003208 PE=4 SV=1
          Length = 1889

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 28/110 (25%), Positives = 52/110 (47%)
 Frame = -2

Query: 362  KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYKVRKQWEPLS 183
            K+ + L D+IK +P  A F++            DL  ++      + V+ K     + + 
Sbjct: 848  KVNIPLLDMIKQVPSYAKFLK------------DLCTIKRG----LNVNKKALLTEQVVE 891

Query: 182  SVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIENM 33
              +LD GA VN++   + ++LG+  LKP    + +AD  V     +IE++
Sbjct: 892  KALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSVKIPRGIIEDV 941


>tr|A9REB0|A9REB0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64990 PE=4 SV=1
          Length = 494

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -2

Query: 188 LSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADH 69
           +S V +DGG+ VN+M V +   L + +L P    +RMADH
Sbjct: 435 ISDVQVDGGSNVNLMNVDIMDALDLEHLVPMTLVLRMADH 474


>tr|A5C9C9|A5C9C9_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_039016 PE=4 SV=1
          Length = 2029

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 29/110 (26%), Positives = 51/110 (46%)
 Frame = -2

Query: 362  KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYKVRKQWEPLS 183
            K+ + L D+IK +P  A F++     ++  +  D         P I V+         + 
Sbjct: 731  KVNIPLLDMIKQVPTYAKFLKDLCTCKSPVKYKDPGC------PTISVNIGGTH----VE 780

Query: 182  SVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIENM 33
              +LD GA VN++   + ++LG+  LKP    + +AD  V     +IEN+
Sbjct: 781  KALLDLGASVNLLPYSVYKQLGLGELKPTAITLSLADRSVKILRGVIENV 830


>tr|A5BXM3|A5BXM3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030274 PE=4 SV=1
          Length = 906

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANF------IRQRRKAEAEARTVDLTAVRYD*VPLIQVD----- 216
           K+ + L D+IK +P  A F      I++R     +  T  ++A+     PL   D     
Sbjct: 161 KVNIPLLDMIKQVPTYAKFVKDLCTIKRRLNVNKKFLTEQVSAIIQFKSPLKYKDPGCPT 220

Query: 215 YKVRKQWEPLSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIEN 36
             V  +   +   +LD GA VN++   + ++LG+  LKP    + +AD  V     +IE+
Sbjct: 221 ISVMIRGTVVEKALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSVKIPRGIIED 280

Query: 35  M 33
           +
Sbjct: 281 V 281


>tr|A5C104|A5C104_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036969 PE=4 SV=1
          Length = 444

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYK--VRKQWEP 189
           K+ + L D+IK +P  A F++            DL  ++      + V+ K  + +Q + 
Sbjct: 273 KVNIPLLDMIKQVPTYAKFLK------------DLCTIKRG----LNVNKKAFLTEQGKL 316

Query: 188 LSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIENM 33
           +   +LD GA VN++   + ++LG+  LKP    + +AD  +     MIE++
Sbjct: 317 VEKALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSMKIRRGMIEDV 368


>tr|A5AKF5|A5AKF5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032725 PE=4 SV=1
          Length = 1662

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 28/110 (25%), Positives = 52/110 (47%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYKVRKQWEPLS 183
           K+ + L D+IK +P  A F++            DL  ++      + V+ K     + + 
Sbjct: 530 KVNIPLLDMIKQVPTYAKFLK------------DLCTIKRG----LTVNKKAFLTEQVVE 573

Query: 182 SVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIENM 33
             +LD GA VN++   + ++LG+  LKP    + +AD  V     +IE++
Sbjct: 574 KALLDLGASVNLLPYSVYKQLGLGELKPTAITLSLADRSVKIPRGVIEDV 623


>tr|A9RE88|A9RE88_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64955 PE=4 SV=1
          Length = 570

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 188 LSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADH 69
           +S V +DGG+ VN+M V   + L +  L P    +RMADH
Sbjct: 382 ISGVQVDGGSSVNLMNVDTMEDLDLKQLLPTTLVLRMADH 421


>tr|A5C5F5|A5C5F5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004007 PE=4 SV=1
          Length = 716

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
 Frame = -2

Query: 362 KLIVELEDIIKTLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLIQVDYKVRKQ----- 198
           K+I+ L D+IK +P  A F++     +          +      +IQ  Y ++ +     
Sbjct: 542 KVIIPLLDMIKQVPSYAKFLKDLCTIKRGLNVNKKAFLTEQVSAIIQCKYPLKYKDPGCP 601

Query: 197 -------WEPLSSVILDGGAGVNIMGVHLQQRLGITNLKPAPFKVRMADHRVVQATCMIE 39
                   + +   +LD GA VN++   + ++LG+  LKP    + +AD  V     +IE
Sbjct: 602 TILVMIGGKVVEKALLDLGASVNLLPYSVYKQLGLGELKPTSITLSLADRSVKIPRGIIE 661

Query: 38  NM 33
           ++
Sbjct: 662 DV 663