BP919548
Clone id YMU001_000126_D04
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTCACAAAACTATAGCCAGATGTATTGTGCTTGGTTCACAATTACCTTACAAAGA
ATGACCTTACAAAATAATCTTCATATGATAAACGTCAATCCAACATGACTGCCACAGGCA
ATAGTATAGATCTGTAAGAAATATCCCCATCGCATACATCAACCCACCATGTAAGCTGCA
GGTTCGACCTTTTGCTCCAAGATCAAACCACAAGGGGTTACCCTTGCCTTCAGTACAATT
TGTTATGGTCTTATATCCTGGAGCAATGACTTATGCGAGTACTCCAAATTCAGCTTCACT
ATGCTGCTTCGCTCATCACTTCACACACATCCCTGCACTCTTGCAACCCTTGGAGACCTG
CTTATCCATGCAATCAGAGTCTGAAAAGCTGCAGATCGAGTCCATGAGCTTGTCGAGGAA
AAGACGAAACATGGGCATGGTTGCGCCATGCACTAAAAACGCCAAAGCCACCAGGCAGCA
TAGTTACTGCATCCACCCAATCCGTCTCCCCAG
■■Homology search results ■■ -
sp_hit_id Q9VVS4
Definition sp|Q9VVS4|MED11_DROME Mediator of RNA polymerase II transcription subunit 11 OS=Drosophila melanogaster
Align length 35
Score (bit) 31.6
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919548|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D04.
(513 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9VVS4|MED11_DROME Mediator of RNA polymerase II transcriptio... 32 2.3
sp|Q9C7F8|MDR15_ARATH Putative multidrug resistance protein 15 O... 31 3.0
sp|Q9D8F1|ALKB4_MOUSE Alkylated DNA repair protein alkB homolog ... 31 3.8
sp|O43541|SMAD6_HUMAN Mothers against decapentaplegic homolog 6 ... 30 8.5
sp|P34229|FAS1_YARLI Fatty acid synthase subunit beta OS=Yarrowi... 30 8.7

>sp|Q9VVS4|MED11_DROME Mediator of RNA polymerase II transcription
subunit 11 OS=Drosophila melanogaster GN=MED11 PE=1 SV=1
Length = 176

Score = 31.6 bits (70), Expect = 2.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1

Query: 376 RV*KAADRVHELVEEKTKHGHGCAMH*KRQSHQAA 480
R+ A RV EL E K KH H KRQ AA
Sbjct: 92 RIQHARSRVRELEETKAKHSHAARQQLKRQQEHAA 126


>sp|Q9C7F8|MDR15_ARATH Putative multidrug resistance protein 15
OS=Arabidopsis thaliana GN=MDR15 PE=3 SV=1
Length = 1245

Score = 31.2 bits (69), Expect = 3.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -1

Query: 450 HGATMPMFRLFLDKLMDSICSFS-DSDCMDKQVSK 349
HGAT+P+F +F K++DS+ + S D + +VS+
Sbjct: 57 HGATLPLFFVFFGKMLDSLGNLSTDPKAISSRVSQ 91


>sp|Q9D8F1|ALKB4_MOUSE Alkylated DNA repair protein alkB homolog 4
OS=Mus musculus GN=Alkbh4 PE=2 SV=1
Length = 300

Score = 30.8 bits (68), Expect = 3.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2

Query: 452 CMAQPCPCFVFSSTSSWTRSAAFQTLIAWISRSPRVARVQGCV*SDERSSIVKL 291
C+ + C CF++ + W A L W P V +Q V +E + +V+L
Sbjct: 37 CLQKKC-CFLYCPDTGWAAGAEGSDLEGWAFPFPGVTLIQDFVTPEEEAEMVRL 89


>sp|O43541|SMAD6_HUMAN Mothers against decapentaplegic homolog 6
OS=Homo sapiens GN=SMAD6 PE=1 SV=2
Length = 496

Score = 29.6 bits (65), Expect = 8.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2

Query: 227 PSVQFVMVLYP--GAMTYASTPNSASLCCFAHHFTHI--PALLQPLETCLSMQSESEKLQ 394
P +Q + L P G ++A+ + ++CC +HF+ + P P + LS + E + L
Sbjct: 233 PDLQHAVELKPLCGCHSFAAAADGPTVCCNPYHFSRLCGPESPPPPYSRLSPRDEYKPLD 292

Query: 395 IESMSLS 415
+ +LS
Sbjct: 293 LSDSTLS 299


>sp|P34229|FAS1_YARLI Fatty acid synthase subunit beta OS=Yarrowia
lipolytica GN=FAS1 PE=3 SV=2
Length = 2086

Score = 29.6 bits (65), Expect = 8.7
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1

Query: 210 WFDLGAKGRTCSLHGGLMYAMGIF-LTDLYYCLWQSCWIDV 91
WF A+G+ C L L YA I L DL Y +S WIDV
Sbjct: 914 WFAKNAQGQVCDLED-LTYAEVIQRLVDLMYVKKESRWIDV 953


tr_hit_id A9VD87
Definition tr|A9VD87|A9VD87_MONBE Predicted protein OS=Monosiga brevicollis
Align length 50
Score (bit) 34.7
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919548|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D04.
(513 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9VD87|A9VD87_MONBE Predicted protein OS=Monosiga brevicollis... 35 2.8
tr|A3YYQ6|A3YYQ6_9SYNE Superfamily II DNA and RNA helicase OS=Sy... 33 6.4
tr|B4LRE6|B4LRE6_DROVI GJ21485 OS=Drosophila virilis GN=GJ21485 ... 33 8.1

>tr|A9VD87|A9VD87_MONBE Predicted protein OS=Monosiga brevicollis
GN=34666 PE=4 SV=1
Length = 314

Score = 34.7 bits (78), Expect = 2.8
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 9/50 (18%)
Frame = +2

Query: 305 CFAHHFTHIP------ALLQPLETCLSMQ---SESEKLQIESMSLSRKRR 427
CFA HF H P A++QP CLS+Q ++ K IES S S+K++
Sbjct: 37 CFAPHFPHRPGGLLQFAMMQPTTRCLSVQTMNADWSKRIIESRSSSKKQQ 86


>tr|A3YYQ6|A3YYQ6_9SYNE Superfamily II DNA and RNA helicase
OS=Synechococcus sp. WH 5701 GN=WH5701_09179 PE=3 SV=1
Length = 427

Score = 33.5 bits (75), Expect = 6.4
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1

Query: 328 HPCTLATLGDLLIHAIRV*KAADRVHELVEEKTKHG 435
HPC +A GDLL H IR + D LV +TKHG
Sbjct: 216 HPCDMARKGDLLSHLIR---SNDWQQVLVFSRTKHG 248


>tr|B4LRE6|B4LRE6_DROVI GJ21485 OS=Drosophila virilis GN=GJ21485 PE=4
SV=1
Length = 1832

Score = 33.1 bits (74), Expect = 8.1
Identities = 26/75 (34%), Positives = 35/75 (46%)
Frame = +2

Query: 212 KGLPLPSVQFVMVLYPGAMTYASTPNSASLCCFAHHFTHIPALLQPLETCLSMQSESEKL 391
K L LP V V V+ P M S + A L +T + L T SM S +EK+
Sbjct: 1056 KRLTLPIVPIVKVVPPTPMAQDSIGSDAHL-----DYTRV------LGTVRSMCSRNEKM 1104

Query: 392 QIESMSLSRKRRNMG 436
Q E + L+ K N+G
Sbjct: 1105 QAEELELAEKAANVG 1119