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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919551
Clone id YMU001_000126_D07
Library
Length 249
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCACCAATTCAATTCCGTTGCACCTAACACCTCCTTTCCACAAGTGTACGCCAAAAGC
CTCTTACCTTGCACTTGATGAAGTATACCCAAGTAAAGCGGCTAAGATCGTCCGCCGGTA
ACACGCAATATAGATCTCAAAAGCCTCTACGTTGCCCTCGAGTGTGTATACCCTAGTAAA
TCAGGTAAAATCATCCTCCAACAACATGAAGTATAGAGATCCGTCTAATGATGAAGTTTG
CATAGGTCC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 40
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919551|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D07.
         (249 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    30   4.9  
sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gon...    29   8.3  

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPM+  S+ G+ YF+   DD +    VY L+   + F+++
Sbjct: 490 GPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVF 529


>sp|Q695T8|RHBL4_TOXGO Rhomboid-like protease 4 OS=Toxoplasma gondii
           GN=ROM4 PE=2 SV=1
          Length = 641

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 26  LTPPFHKCTPKASYLALDEVYPSKAAKIVRR 118
           +TPPF  C PKA+   L E   ++ A+ +RR
Sbjct: 492 MTPPFSWCVPKATQQKLLERAKARKAEAIRR 522
tr_hit_id B6REL8
Definition tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa
Align length 40
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919551|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_D07.
         (249 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnIn...    45   0.001
tr|A5AWP3|A5AWP3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A5AL21|A5AL21_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A5AHH2|A5AHH2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical O...    40   0.059
tr|A5BT67|A5BT67_VITVI Putative uncharacterized protein OS=Vitis...    40   0.059
tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A...    39   0.17 
tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein OS=...    38   0.22 
tr|Q8WRX5|Q8WRX5_ANOGA Pol polyprotein (Fragment) OS=Anopheles g...    38   0.22 
tr|Q6L3X6|Q6L3X6_SOLDE Polyprotein, putative OS=Solanum demissum...    37   0.38 
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...    37   0.65 
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...    37   0.65 
tr|Q9M197|Q9M197_ARATH Copia-type reverse transcriptase-like pro...    37   0.65 
tr|Q9C739|Q9C739_ARATH Copia-type polyprotein, putative OS=Arabi...    37   0.65 
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...    37   0.65 
tr|Q9SKW9|Q9SKW9_ARATH F5J5.1 OS=Arabidopsis thaliana PE=4 SV=1        36   0.85 
tr|A5BLB0|A5BLB0_VITVI Putative uncharacterized protein OS=Vitis...    36   0.85 
tr|Q84VI4|Q84VI4_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    36   1.1  
tr|Q84VH8|Q84VH8_SOYBN Gag-pol polyprotein OS=Glycine max GN=gag...    36   1.1  
tr|Q6L3Y5|Q6L3Y5_SOLDE Gag-pol polyprotein, putative OS=Solanum ...    36   1.1  
tr|O65173|O65173_LITER Putative retrovirus-related polyprotein (...    36   1.1  
tr|A5AIF0|A5AIF0_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BPE6|A5BPE6_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5B4I5|A5B4I5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A5BR97|A5BR97_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5BPR9|A5BPR9_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5BFD6|A5BFD6_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5B9M8|A5B9M8_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis...    35   1.4  

>tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnInt1
           PE=4 SV=1
          Length = 1165

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQT+SL GS YF++L DD++  + VY L+   EAF+++
Sbjct: 348 GPMQTASLGGSKYFLMLTDDYSRMSWVYFLKSKGEAFDMF 387


>tr|A5AWP3|A5AWP3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020777 PE=4 SV=1
          Length = 1472

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQT+S  GS YF+L  DD +  + VY L+   E FE +
Sbjct: 492 GPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETF 531


>tr|A5AL21|A5AL21_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_031870 PE=4 SV=1
          Length = 1274

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQT+S  GS YF+L  DD +  + VY L+   E FE +
Sbjct: 507 GPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETF 546


>tr|A5AHH2|A5AHH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032906 PE=4 SV=1
          Length = 1430

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQT+S  GS YF+L  DD +  + VY L+   E FE +
Sbjct: 618 GPMQTASFGGSRYFLLFTDDHSRMSWVYFLQSKAETFETF 657


>tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical
           OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1
          Length = 1333

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPM+  SL GS YF++  DD++ F+ VY L+   E FE +
Sbjct: 512 GPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETF 551


>tr|A5BT67|A5BT67_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_020406 PE=4 SV=1
          Length = 1183

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQT+S  GS YF+L  +D +  + VY L+   E FE +
Sbjct: 441 GPMQTASFGGSRYFLLFTNDHSRMSWVYFLQSKAETFETF 480


>tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1499

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVE 145
           GPMQT S++GS YF+   DDF+  T VY L+   E
Sbjct: 525 GPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSE 559


>tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g15650 PE=2 SV=1
          Length = 1347

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GPMQ  S+DGS Y++L  DD+T    VY L+   E F  +
Sbjct: 524 GPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFATF 563


>tr|Q8WRX5|Q8WRX5_ANOGA Pol polyprotein (Fragment) OS=Anopheles
           gambiae PE=4 SV=1
          Length = 942

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEI 133
           GPM T +  GS YF+ + DDF+ +T VY L+   EA E+
Sbjct: 83  GPMNTVTSGGSRYFLTMIDDFSRYTTVYFLKRKSEAAEV 121


>tr|Q6L3X6|Q6L3X6_SOLDE Polyprotein, putative OS=Solanum demissum
           GN=SDM1_47t00010 PE=4 SV=2
          Length = 1793

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 249 GPMQTSSLDGSLYFMLLEDDFT*FTRVYTLEGNVEAFEIY 130
           GP++T SL G+ YF+L  DD+T    VY +    E F+++
Sbjct: 637 GPIKTDSLSGNKYFLLFIDDYTRMCWVYFIRLKSEVFDVF 676