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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919559
Clone id YMU001_000126_E04
Library
Length 510
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGGCATGTATGGACTTTATTTCGGCTGCTCCTTGGTCCAGCGAAGAGGAGAAAGTAATT
CATGGAACTTTTGCAAATTCTAGCATAGTGCCTTCTAGAGAAGTTGCAGCCCGCTTCGGT
CTATCAAAGGAGAAGCCTGTCTCAAATCTGAAGGACACATTGTGGGACCTTTATGAATCG
TGTAACTATGGTGAGAGTGAGGACGCTTACCTTCCTTGCCAACTCTTCAATTTAATTGAA
GGTGTACTTAAGGGGCTATCATCTACTAGCAGGTCAAATGTTTGGAGCAAGAAAGCTATT
AGTGAGTTTCTATATGAAGCGGCTAATGACTGTGTTGAGGCAATGAAATCATCTTTAAGA
GATGAATGGATGTTAACTAACAGGTCCTTCTTGTGCTGGCTACGCATGACTGAGCTTCTA
CTTGAATTAACAGATGGAAAAGAGTCTGTGATGGCCGTGGCATCAGATGACGATTTATGC
GATTTTCTCCTTCCAGCATTAAGAGTACTC
■■Homology search results ■■ -
sp_hit_id Q6MAJ5
Definition sp|Q6MAJ5|VATA_PARUW V-type ATP synthase alpha chain OS=Protochlamydia amoebophila (strain UWE25)
Align length 76
Score (bit) 33.1
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919559|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E04.
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MAJ5|VATA_PARUW V-type ATP synthase alpha chain OS=Protochl...    33   0.77 
sp|Q3Y4E2|SELN_DANRE Selenoprotein N OS=Danio rerio GN=sepn1 PE=...    33   1.0  
sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus G...    30   5.0  
sp|A7MZE2|SYH_VIBHB Histidyl-tRNA synthetase OS=Vibrio harveyi (...    30   8.6  

>sp|Q6MAJ5|VATA_PARUW V-type ATP synthase alpha chain
           OS=Protochlamydia amoebophila (strain UWE25) GN=atpA
           PE=3 SV=1
          Length = 593

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +1

Query: 34  WSSEEEKVIHGTFANSSIVPSREVAARFGLSKEKPVSNLKDTLWDL-YESCNYGESEDAY 210
           W    ++  H  F  + I    EV    G+S E  ++ LK  L+D  Y   N  + EDAY
Sbjct: 464 WDQMVKRARHILFNGNEIGKRMEVVGEEGISMEDMLTYLKAELYDFSYLQQNAFDKEDAY 523

Query: 211 LPCQ----LFNLIEGV 246
            P +    LF LI  +
Sbjct: 524 CPLKRQIALFQLINQI 539


>sp|Q3Y4E2|SELN_DANRE Selenoprotein N OS=Danio rerio GN=sepn1 PE=2
           SV=3
          Length = 557

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 122 RPKRAATSLEGTMLEFAKVP*ITFSSSLDQGAAEIKSIHA 3
           R + A+  LE TM  F KVP + FS +  + +AE K +H+
Sbjct: 378 RREEASRRLEVTMYPFKKVPYLPFSEAFSRASAEKKLVHS 417


>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus
           GN=Hdac4 PE=1 SV=2
          Length = 1077

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -3

Query: 463 MPRPSQTLFHLLIQVEAQSCVASTRRTC*LTSIHLLKMISLPQHSH*PLHIETH 302
           +P+ +Q L HL+IQ + Q  +   ++      +HL KMIS P  S  P   E+H
Sbjct: 469 LPQNAQALQHLVIQQQHQQFLEKHKQQFQQQQLHLSKMISKP--SEPPRQPESH 520


>sp|A7MZE2|SYH_VIBHB Histidyl-tRNA synthetase OS=Vibrio harveyi
           (strain ATCC BAA-1116 / BB120) GN=hisS PE=3 SV=1
          Length = 422

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = -2

Query: 389 KDLLVNIHSSLKDDFIASTQSLAASYRNSLIAFLLQTFDLLVDD 258
           ++L +N H  L+ + I S +   A YR +L+AFL Q  D+L +D
Sbjct: 153 RELGINEHVRLELNSIGSQED-RADYRTALVAFLEQHIDVLDED 195
tr_hit_id A9TH62
Definition tr|A9TH62|A9TH62_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 147
Score (bit) 38.1
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919559|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E04.
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TH62|A9TH62_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.25 
tr|A6FEC1|A6FEC1_9GAMM DNA topoisomerase OS=Moritella sp. PE36 G...    37   0.43 
tr|A9RBR2|A9RBR2_PHYPA Predicted protein (Fragment) OS=Physcomit...    37   0.56 
tr|Q82Y19|Q82Y19_NITEU Deoxynucleoside kinase OS=Nitrosomonas eu...    35   2.8  
tr|A6TCM9|A6TCM9_KLEP7 Putative uncharacterized protein OS=Klebs...    35   2.8  
tr|A4Y873|A4Y873_SHEPC DNA topoisomerase OS=Shewanella putrefaci...    35   2.8  
tr|A1RIB5|A1RIB5_SHESW DNA topoisomerase OS=Shewanella sp. (stra...    35   2.8  
tr|A2V427|A2V427_SHEPU DNA topoisomerase OS=Shewanella putrefaci...    35   2.8  
tr|B6GXC9|B6GXC9_PENCH Pc12g07770 protein OS=Penicillium chrysog...    35   2.8  
tr|A6WPZ8|A6WPZ8_SHEB8 DNA topoisomerase OS=Shewanella baltica (...    34   3.7  
tr|B4FBN9|B4FBN9_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.7  
tr|A7P917|A7P917_VITVI Chromosome chr3 scaffold_8, whole genome ...    34   3.7  
tr|A5B6C7|A5B6C7_VITVI Putative uncharacterized protein OS=Vitis...    34   3.7  
tr|Q16QK8|Q16QK8_AEDAE Dedicator of cytokinesis (Dock) OS=Aedes ...    34   3.7  
tr|Q9SKH2|Q9SKH2_ARATH Expressed protein (At2g13690) OS=Arabidop...    33   6.2  
tr|Q7XLJ0|Q7XLJ0_ORYSA OSJNBa0009K15.20 protein OS=Oryza sativa ...    33   6.2  
tr|Q7FM55|Q7FM55_ARATH Putative f13j11 PRLI-interacting factor G...    33   6.2  
tr|Q0JEG7|Q0JEG7_ORYSJ Os04g0278000 protein OS=Oryza sativa subs...    33   6.2  
tr|B8ARM6|B8ARM6_ORYSI Putative uncharacterized protein OS=Oryza...    33   6.2  
tr|A3ARV9|A3ARV9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.2  
tr|Q8ZMR3|Q8ZMR3_SALTY Putative periplasmic protein OS=Salmonell...    33   8.1  
tr|B4TE69|B4TE69_SALHS Putative uncharacterized protein OS=Salmo...    33   8.1  
tr|B5P8P4|B5P8P4_SALET Putative uncharacterized protein OS=Salmo...    33   8.1  
tr|B5BY65|B5BY65_SALET Putative uncharacterized protein OS=Salmo...    33   8.1  
tr|Q9ARC2|Q9ARC2_LINUS Ngc-A protein OS=Linum usitatissimum GN=N...    33   8.1  
tr|Q9ARB5|Q9ARB5_LINUS N2-A protein OS=Linum usitatissimum GN=N2...    33   8.1  
tr|Q9AR40|Q9AR40_LINUS Nbi-B protein (Ngc-B protein) OS=Linum us...    33   8.1  

>tr|A9TH62|A9TH62_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_92714 PE=4 SV=1
          Length = 521

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
 Frame = +1

Query: 1   EACMDFISAAPWSSEEEKVIHGTFANSSIVPSREVAARFG----LSKEKPVSNLKDTLWD 168
           +ACM +++  PW++     I    +   I P+ ++AAR G    L+K+  +  LK  L  
Sbjct: 220 DACMRYLAVMPWNAVSLSEIRSAVSAFQIAPTPDLAARLGTFGTLAKDSSLDALKRVLET 279

Query: 169 LYESCNYGESEDAYLPCQLFNLIEGVLKGLSSTSRSNVWSKK---AISEFLYEAANDCVE 339
           L       +  D  +  ++        + L  + R    SK     + + +YEA    VE
Sbjct: 280 LLLKSMQMDQPD-LMETKVLENRSAFERLLKVSMRGPTVSKSVAGVVKDVMYEALRRAVE 338

Query: 340 AMKSSLRDEWMLTNRSF------LCWL 402
             +   R   +  +  F      LCWL
Sbjct: 339 DFRQHCRIPHLYKDEEFSIAGKGLCWL 365


>tr|A6FEC1|A6FEC1_9GAMM DNA topoisomerase OS=Moritella sp. PE36
           GN=PE36_16620 PE=3 SV=1
          Length = 649

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
 Frame = +1

Query: 106 AARFGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLFNLIEGVLKGLSSTS----- 270
           A RFG+S ++ +   +  L++ ++   Y  S+  YLP + +N   GV+  ++ TS     
Sbjct: 302 AKRFGMSAQQVLDTCQ-ALYERHKLITYPRSDSRYLPKEHYNHRGGVINAIAKTSASLQQ 360

Query: 271 ---------RSNVWSKKAIS---EFLYEAANDCVEAMKSSLRDEWMLTNRSFLC 396
                    RS  W+   I      +    +  VE + SS ++ + L  R +LC
Sbjct: 361 AALNADQSLRSKAWNDSKIEAHHAIIPTEKSSHVERLNSSEKNIYELVARQYLC 414


>tr|A9RBR2|A9RBR2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_50789 PE=4 SV=1
          Length = 440

 Score = 37.0 bits (84), Expect = 0.56
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
 Frame = +1

Query: 4   ACMDFISAAPWSSEEEK---VIHGTFANSSIVPSREVAARFGLSKEKPVSNLKDTLWDLY 174
           AC++++ A PW+ EEE+    + G     S+  + +V  R    +    +N +D L  L 
Sbjct: 162 ACLEYLEAVPWADEEEEKVTALMGQLQLESVGVAADVMKRCSALES---TNSEDVLVRLL 218

Query: 175 ESCNYGESEDAYLPCQLFNLIEGVLKGLSSTSRSNVWSKKAISEFLYEAANDCVEAM 345
           ++   G  + A    ++ +L+  +L+   S +++ V   K   E LY A + C++++
Sbjct: 219 QAVTKGTDDKARR--EMKSLVSRMLRENMSQNKNTVDVSK---ESLYRACHACLDSL 270


>tr|Q82Y19|Q82Y19_NITEU Deoxynucleoside kinase OS=Nitrosomonas
           europaea GN=NE0071 PE=4 SV=1
          Length = 214

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = +1

Query: 55  VIHGTFANSSIVPSREVAAR--FGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLF 228
           V+ G         +R +A R  + L  E+P +N        +    YG+     L  QLF
Sbjct: 10  VVEGPIGAGKTSLARNMATRLNYSLMLEQPEANP-------FLEKFYGDMSRHTLSTQLF 62

Query: 229 NLIEGVLKGLSSTSRSNVWSKKAISEFLYE 318
            LI+  ++ L S  R NV+S+  IS+FL+E
Sbjct: 63  FLIQR-MQQLQSMERENVFSRSVISDFLFE 91


>tr|A6TCM9|A6TCM9_KLEP7 Putative uncharacterized protein
           OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC
           700721 / MGH 78578) GN=KPN78578_28890 PE=4 SV=1
          Length = 214

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 27/92 (29%), Positives = 42/92 (45%)
 Frame = +1

Query: 235 IEGVLKGLSSTSRSNVWSKKAISEFLYEAANDCVEAMKSSLRDEWMLTNRSFLCWLRMTE 414
           ++ V+K LS  SR   W K    + L +       + +   + +    N + LCWL + +
Sbjct: 101 LKAVMK-LSRNSRGRKWLKTLGDDALPDLTTSAQPSQRGMHKRDKARENTARLCWL-LVQ 158

Query: 415 LLLELTDGKESVMAVASDDDLCDFLLPALRVL 510
           LL+E TDG+       SD    D +L  LR L
Sbjct: 159 LLVEETDGRYG----TSDKPASDRILRKLRAL 186


>tr|A4Y873|A4Y873_SHEPC DNA topoisomerase OS=Shewanella putrefaciens
           (strain CN-32 / ATCC BAA-453) GN=Sputcn32_2435 PE=3 SV=1
          Length = 708

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 100 EVAARFGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLFNLIEGVLKGLS 261
           + A RFG+S  K V +   +L++ ++   Y  S+  YLP +  NL   VLK +S
Sbjct: 300 DAAKRFGMSA-KDVLDTCQSLYERHKLITYPRSDSRYLPVEQHNLAPSVLKAIS 352


>tr|A1RIB5|A1RIB5_SHESW DNA topoisomerase OS=Shewanella sp. (strain
           W3-18-1) GN=Sputw3181_1573 PE=3 SV=1
          Length = 708

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 100 EVAARFGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLFNLIEGVLKGLS 261
           + A RFG+S  K V +   +L++ ++   Y  S+  YLP +  NL   VLK +S
Sbjct: 300 DAAKRFGMSA-KDVLDTCQSLYERHKLITYPRSDSRYLPVEQHNLAPSVLKAIS 352


>tr|A2V427|A2V427_SHEPU DNA topoisomerase OS=Shewanella putrefaciens
           200 GN=Sput200DRAFT_1839 PE=3 SV=1
          Length = 696

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 100 EVAARFGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLFNLIEGVLKGLS 261
           + A RFG+S  K V +   +L++ ++   Y  S+  YLP +  NL   VLK +S
Sbjct: 300 DAAKRFGMSA-KDVLDTCQSLYERHKLITYPRSDSRYLPVEQHNLAPSVLKAIS 352


>tr|B6GXC9|B6GXC9_PENCH Pc12g07770 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc12g07770 PE=3 SV=1
          Length = 565

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +1

Query: 1   EACMDFISAAPWSSEEEKVIHGTFANSSIVPSREVAARFGLSK---EKPVSNLKDTL 162
           E   DFI+ AP    E  VIHG        P R    RFGLSK     P++ +K+ +
Sbjct: 218 EEATDFIAIAPLQQNEAPVIHG--------PERPTVPRFGLSKLLMSMPMTTIKEKI 266


>tr|A6WPZ8|A6WPZ8_SHEB8 DNA topoisomerase OS=Shewanella baltica
           (strain OS185) GN=Shew185_2753 PE=3 SV=1
          Length = 705

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 100 EVAARFGLSKEKPVSNLKDTLWDLYESCNYGESEDAYLPCQLFNLIEGVLKGLSS 264
           + A RFG+S  K V +   +L++ ++   Y  S+  YLP +  +L   VLK +SS
Sbjct: 300 DAAKRFGMSA-KDVLDTCQSLYERHKLITYPRSDSRYLPVEQHSLAPSVLKAISS 353