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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919561
Clone id YMU001_000126_E07
Library
Length 272
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGATCGTAACACTAAGCAAGAGTGTATCTTGCTTTACTTGGATTTCCACAAAGCCTATGA
CAGGATTACATGGTCATGTATTGAAGATGTCATGAAATCTCTAGGCTTTGGGCCTTGGAT
GTGCAGGTTGGTGAGCACCTTTGGTGCTAGTAGCCAATCGAAGCTACTATTCAATGAGAG
AATTGTGGGAGTGTTTGAGGTCAAGAGATCCATCAATTAGGGGTGCTATCTTGCCCCTCT
CTTATTCACCATTGGATCTCATCCTCTGGTGA
■■Homology search results ■■ -
sp_hit_id P14381
Definition sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis
Align length 89
Score (bit) 38.9
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919561|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E07.
         (272 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa prot...    39   0.008
sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog OS=Nyc...    35   0.090
sp|Q5EAK6|ATM_DROME Serine/threonine-protein kinase ATM OS=Droso...    33   0.45 
sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from t...    32   1.3  
sp|P34620|YO84_CAEEL Putative uncharacterized transposon-derived...    31   2.2  
sp|Q16650|TBR1_HUMAN T-box brain protein 1 OS=Homo sapiens GN=TB...    30   4.9  
sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1 O...    30   4.9  

>sp|P14381|YTX2_XENLA Transposon TX1 uncharacterized 149 kDa protein
           OS=Xenopus laevis PE=4 SV=1
          Length = 1308

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 22/89 (24%), Positives = 39/89 (43%)
 Frame = +2

Query: 5   RNTKQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERI 184
           R T      L LD  KA+DR+    +   +++  FGP     + T  AS++  +  N  +
Sbjct: 582 RRTGLSLAFLSLDQEKAFDRVDHQYLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSL 641

Query: 185 VGVFEVKRSIN*GCYLAPLLFTIGSHPLV 271
                  R +  GC L+  L+++   P +
Sbjct: 642 TAPLAFGRGVRQGCPLSGQLYSLAIEPFL 670


>sp|P08548|LIN1_NYCCO LINE-1 reverse transcriptase homolog
           OS=Nycticebus coucang PE=1 SV=1
          Length = 1260

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = +2

Query: 26  ILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGVFEVK 205
           ++L +D  KA+D I    +   +K +G      +L+    +   + ++ N   +  F ++
Sbjct: 594 MILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLR 653

Query: 206 RSIN*GCYLAPLLFTI 253
                GC L+PLLF I
Sbjct: 654 SGTRQGCPLSPLLFNI 669


>sp|Q5EAK6|ATM_DROME Serine/threonine-protein kinase ATM OS=Drosophila
            melanogaster GN=tefu PE=2 SV=1
          Length = 2767

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 35   YLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVS 136
            +L  +K   RI W  I    KSL + PWMC  VS
Sbjct: 1583 FLHSNKQIRRIDWLSILKATKSLSYEPWMCAFVS 1616


>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from
           transposon X-element OS=Drosophila melanogaster GN=ORF2
           PE=3 SV=1
          Length = 908

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = +2

Query: 8   NTKQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIV 187
           ++K+ C  L+LD  +A+DR+    ++  +K     P+   L+ ++    +  + F+  I 
Sbjct: 573 DSKEYCNSLFLDIREAFDRVWHIGLQLKIKQTLPAPYF-GLLKSYLEGRRFAVRFHSAIS 631

Query: 188 GVFEVKRSIN*GCYLAPLLFTIGSHPL 268
               V   +  G  L PLL+ + SH +
Sbjct: 632 TEHNVAAGVPQGSVLGPLLYCLYSHDM 658


>sp|P34620|YO84_CAEEL Putative uncharacterized transposon-derived
           protein ZK1236.4 OS=Caenorhabditis elegans GN=ZK1236.4
           PE=5 SV=1
          Length = 364

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +2

Query: 35  YLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGVFEVKRSI 214
           YLDF KA+D+++   + D + S+     + R +  F  +   K+     +    +    +
Sbjct: 22  YLDFSKAFDKVSHDILLDKLTSIKINKHLIRWLDVFLTNRSFKVKVGNTLSEPKKTVCGV 81

Query: 215 N*GCYLAPLLFTI 253
             G  ++P+LF I
Sbjct: 82  PQGSVISPVLFGI 94


>sp|Q16650|TBR1_HUMAN T-box brain protein 1 OS=Homo sapiens GN=TBR1
           PE=1 SV=1
          Length = 682

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 15/62 (24%)
 Frame = -2

Query: 256 SNGE*ERGKIAPLIDGSLDLKHSHNSLIE**LRLATSTK---------------GAHQPA 122
           S G+ +R K++P++DG  +L+HS +        L+ S++               G H PA
Sbjct: 74  SPGDVQRSKLSPVLDGVSELRHSFDGSAADRYLLSQSSQPQSAATAPSAMFPYPGQHGPA 133

Query: 121 HP 116
           HP
Sbjct: 134 HP 135


>sp|P11369|POL2_MOUSE Retrovirus-related Pol polyprotein LINE-1
           OS=Mus musculus GN=Pol PE=2 SV=2
          Length = 1281

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 26  ILLYLDFHKAYDRITWSCIEDVMKSLGF-GPWMCRLVSTFGASSQSKLLFNERIVGVFEV 202
           +++ LD  KA+D+I    +  V++  G  GP++  ++    +   + +  N   +    +
Sbjct: 602 MIISLDAEKAFDKIQHPFMIKVLERSGIQGPYL-NMIKAIYSKPVANIKVNGEKLEAIPL 660

Query: 203 KRSIN*GCYLAPLLFTI 253
           K     GC L+P LF I
Sbjct: 661 KSGTRQGCPLSPYLFNI 677
tr_hit_id Q0DJP0
Definition tr|Q0DJP0|Q0DJP0_ORYSJ Os05g0247600 protein OS=Oryza sativa subsp. japonica
Align length 85
Score (bit) 59.3
E-value 9.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919561|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E07.
         (272 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DJP0|Q0DJP0_ORYSJ Os05g0247600 protein OS=Oryza sativa subs...    59   9e-08
tr|Q1KSC2|Q1KSC2_SORBI Putative non-LTR retroelement reverse tra...    58   3e-07
tr|B8AS88|B8AS88_ORYSI Putative uncharacterized protein OS=Oryza...    57   3e-07
tr|Q7XMG7|Q7XMG7_ORYSJ OSJNBa0028I23.15 protein OS=Oryza sativa ...    55   2e-06
tr|O64428|O64428_CHLVU Reverse transcriptase OS=Chlorella vulgar...    55   2e-06
tr|Q2RAL0|Q2RAL0_ORYSJ Retrotransposon protein, putative, unclas...    54   3e-06
tr|Q10PF4|Q10PF4_ORYSJ Retrotransposon protein, putative, unclas...    54   3e-06
tr|Q76IL7|Q76IL7_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    54   5e-06
tr|Q7XWB0|Q7XWB0_ORYSJ OSJNBa0061A09.16 protein OS=Oryza sativa ...    54   5e-06
tr|Q2R4V1|Q2R4V1_ORYSJ Retrotransposon protein, putative, unclas...    54   5e-06
tr|Q2QZT5|Q2QZT5_ORYSJ Retrotransposon protein, putative, unclas...    54   5e-06
tr|Q0IR67|Q0IR67_ORYSJ Os11g0672600 protein (Fragment) OS=Oryza ...    54   5e-06
tr|Q7F9Q0|Q7F9Q0_ORYSJ OSJNBa0045O17.3 protein OS=Oryza sativa s...    53   7e-06
tr|Q76IL1|Q76IL1_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    53   9e-06
tr|Q7XLK6|Q7XLK6_ORYSA OSJNBa0009K15.4 protein OS=Oryza sativa G...    53   9e-06
tr|Q76IL5|Q76IL5_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    52   1e-05
tr|Q76IL3|Q76IL3_DANRE Pol-like protein OS=Danio rerio GN=ORF2 P...    52   1e-05
tr|Q7Y1P7|Q7Y1P7_ORYSJ Putative reverse transcriptase OS=Oryza s...    52   2e-05
tr|Q7X6P2|Q7X6P2_ORYSJ OSJNBa0067G20.22 protein (OSJNBb0062B06.3...    52   2e-05
tr|Q53PH7|Q53PH7_ORYSJ Retrotransposon protein, putative, unclas...    52   2e-05
tr|Q53MA1|Q53MA1_ORYSJ Retrotransposon protein, putative, unclas...    52   2e-05
tr|Q3LRV0|Q3LRV0_MAIZE Reverse transcriptase (Fragment) OS=Zea m...    52   2e-05
tr|Q10IE3|Q10IE3_ORYSJ Retrotransposon protein, putative, unclas...    52   2e-05
tr|A3ASJ5|A3ASJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|Q8H0A3|Q8H0A3_ORYSJ Retrotransposon protein, putative, unclas...    51   2e-05
tr|Q7X6R8|Q7X6R8_ORYSJ OSJNBa0071G03.15 protein (OSJNBa0019J05.4...    51   2e-05
tr|Q852D8|Q852D8_ORYSJ Putative retrotransposon protein OS=Oryza...    51   3e-05
tr|Q7XVC3|Q7XVC3_ORYSJ OSJNBa0072D21.13 protein OS=Oryza sativa ...    51   3e-05
tr|Q2QNF1|Q2QNF1_ORYSJ Retrotransposon protein, putative, unclas...    51   3e-05
tr|Q01LI9|Q01LI9_ORYSA OSIGBa0092E09.9 protein OS=Oryza sativa G...    51   3e-05

>tr|Q0DJP0|Q0DJP0_ORYSJ Os05g0247600 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0247600 PE=4 SV=1
          Length = 460

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 32/85 (37%), Positives = 50/85 (58%)
 Frame = +2

Query: 5   RNTKQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERI 184
           +++K+E +LL LDF KA+D I  S I D+M+  GF P     +S   +S+ S ++ N  +
Sbjct: 287 QHSKREIVLLKLDFEKAFDTIEHSVILDIMRQKGFDPKWISWISHIFSSASSSVILNGVL 346

Query: 185 VGVFEVKRSIN*GCYLAPLLFTIGS 259
              F  KR +  G  L+PLLF +G+
Sbjct: 347 GKSFYCKRGVRQGDPLSPLLFVLGA 371


>tr|Q1KSC2|Q1KSC2_SORBI Putative non-LTR retroelement reverse
            transcriptase OS=Sorghum bicolor PE=4 SV=1
          Length = 1505

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 26/80 (32%), Positives = 43/80 (53%)
 Frame = +2

Query: 14   KQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGV 193
            K+  ++  +DF KAYD++ WS ++  ++  GF P  CR V T        +  N+ I   
Sbjct: 1084 KRNGVIFKIDFEKAYDKVKWSFLQQTLRMKGFSPKWCRWVQTMVTGGSVGIKVNDDIGPY 1143

Query: 194  FEVKRSIN*GCYLAPLLFTI 253
            F+ KR +  G  ++P+LF I
Sbjct: 1144 FQTKRGLRQGDPMSPILFNI 1163


>tr|B8AS88|B8AS88_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15342 PE=4 SV=1
          Length = 815

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 31/84 (36%), Positives = 45/84 (53%)
 Frame = +2

Query: 17  QECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGVF 196
           Q+  LL +D  KA+DRI WS I D ++  GF     RLV +   S+   ++ N +  G F
Sbjct: 384 QKAFLLKIDLSKAFDRIEWSFIADALRRKGFHGNFIRLVLSCINSANFSVIINGQSYGYF 443

Query: 197 EVKRSIN*GCYLAPLLFTIGSHPL 268
             +R I  GC L+P LF +  + L
Sbjct: 444 SAQRGIRQGCPLSPYLFVLAINEL 467


>tr|Q7XMG7|Q7XMG7_ORYSJ OSJNBa0028I23.15 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0028I23.15 PE=4 SV=1
          Length = 593

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 43/80 (53%)
 Frame = +2

Query: 14  KQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGV 193
           K++ ++L LDF KAYD++ W  ++  ++  GF P  C+ +          +  N+ I   
Sbjct: 18  KKDGVILKLDFEKAYDKVDWKFLQQTLRMKGFEPRWCKWIDQVVRGGSVAVKVNDEIGNF 77

Query: 194 FEVKRSIN*GCYLAPLLFTI 253
           F+ K+ +  G  L+PLLF +
Sbjct: 78  FQTKKGLRQGDPLSPLLFNL 97


>tr|O64428|O64428_CHLVU Reverse transcriptase OS=Chlorella vulgaris
           PE=4 SV=1
          Length = 1309

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 30/86 (34%), Positives = 47/86 (54%)
 Frame = +2

Query: 11  TKQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVG 190
           T Q  + ++LDF KA+DR+  + IE  M ++GFGP + R V    + + S++ FN     
Sbjct: 627 THQPGVQVFLDFEKAFDRLDRAWIERCMAAVGFGPGVQRWVHILHSGTTSRVAFNGWHTD 686

Query: 191 VFEVKRSIN*GCYLAPLLFTIGSHPL 268
            F V   +  G  L+PLLF +   P+
Sbjct: 687 AFPVAAGVFQGSPLSPLLFVLARAPM 712


>tr|Q2RAL0|Q2RAL0_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g05030 PE=4 SV=1
          Length = 994

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +2

Query: 14  KQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGV 193
           KQ+ ++  +DF KAYD++ WS ++  ++  GF    C  V  F       +  N+++   
Sbjct: 516 KQDGVIFKIDFEKAYDKVRWSFLQQTLRMKGFSHKWCSWVEKFTQGGNVSIKVNDQVGNY 575

Query: 194 FEVKRSIN*GCYLAPLLFTI 253
           F+ K+ +  G  ++P+LF I
Sbjct: 576 FQSKKGLRQGDPMSPVLFNI 595


>tr|Q10PF4|Q10PF4_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g13320 PE=4 SV=1
          Length = 1686

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +2

Query: 14   KQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGV 193
            KQ+ ++  +DF KAYD++ WS ++  ++  GF    C  V  F       +  N+++   
Sbjct: 1486 KQDGVIFKIDFEKAYDKVRWSFLQQTLRMKGFSHKWCSWVEKFTQGGNVSIKVNDQVGNY 1545

Query: 194  FEVKRSIN*GCYLAPLLFTI 253
            F+ K+ +  G  ++P+LF I
Sbjct: 1546 FQSKKGLRQGDPMSPVLFNI 1565


>tr|Q76IL7|Q76IL7_DANRE Pol-like protein OS=Danio rerio GN=ORF2 PE=4
           SV=1
          Length = 1284

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
 Frame = +2

Query: 8   NTKQ-ECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERI 184
           N KQ +  L+ LDF KA+DR+    +  V+KS GFG    + V      + +++  N  +
Sbjct: 596 NDKQKDGFLISLDFEKAFDRVEHDFLFGVLKSFGFGENFIKWVQILYRGAVTRIKCNGFL 655

Query: 185 VGVFEVKRSIN*GCYLAPLLFTIGSHPL 268
              F+++RSI  GC L+ LL+ + + PL
Sbjct: 656 TDCFKIRRSIRQGCPLSALLYALVAEPL 683


>tr|Q7XWB0|Q7XWB0_ORYSJ OSJNBa0061A09.16 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0061A09.16 PE=4 SV=2
          Length = 764

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 31/85 (36%), Positives = 46/85 (54%)
 Frame = +2

Query: 5   RNTKQECILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERI 184
           + +K+E +LL LDF KA+D I  S I D+M+  GF       +    +S+ S +L N   
Sbjct: 598 QQSKREIVLLKLDFEKAFDTIEHSTILDIMRQKGFDSKWLNWIDLIFSSASSSVLLNGVP 657

Query: 185 VGVFEVKRSIN*GCYLAPLLFTIGS 259
              F  KR +  G  L+PLLF +G+
Sbjct: 658 GRNFYCKRGVRQGDPLSPLLFVLGA 682


>tr|Q2R4V1|Q2R4V1_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g27210 PE=4 SV=1
          Length = 1296

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/76 (30%), Positives = 42/76 (55%)
 Frame = +2

Query: 26   ILLYLDFHKAYDRITWSCIEDVMKSLGFGPWMCRLVSTFGASSQSKLLFNERIVGVFEVK 205
            ++L +DF KAYD++ WS ++  ++  GF P  C  + +F       +  N++I   F+  
Sbjct: 984  VILKIDFEKAYDKVKWSFVQQTLRMKGFSPKWCEWIVSFIQGGHVGIKVNDQIGDNFQTH 1043

Query: 206  RSIN*GCYLAPLLFTI 253
            + +  G  L+P+LF I
Sbjct: 1044 KGLRQGDPLSPILFNI 1059