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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919562
Clone id YMU001_000126_E08
Library
Length 332
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCTTTCAGCCCTCCTGCTTATTAGCAATCCCAACAAAGGATTTAACTCCTTTCCTTTGAT
GTCTTTTGCGACTTCCGCACTTCTGCGACGTAAGCTGTTCATTTCCTCCTCACCCAGACG
TAGAGGAACTCTGGACCCCGACGCATTCTCTGCCTCCCTACAGCTACAGAAATTCCTATC
ACCGCTTCCATAACTCAAGTCCTTCTTTGGTACTGATTTGCAAACAGAAGCCATACTAAT
ATAGGCTTCGTCGTTTACCATACACTGAGAACCACTAATTGAAGCTTCTTGGGAATCAGT
ATCACAAGCTTCTTCGTCCCCAGCTGCTCGCT
■■Homology search results ■■ -
sp_hit_id Q64289
Definition sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus norvegicus
Align length 54
Score (bit) 32.0
E-value 0.99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919562|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E08.
         (332 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus...    32   0.99 
sp|Q60867|NDF1_MOUSE Neurogenic differentiation factor 1 OS=Mus ...    32   0.99 
sp|Q13562|NDF1_HUMAN Neurogenic differentiation factor 1 OS=Homo...    32   0.99 
sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila mela...    30   2.9  
sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus...    30   2.9  
sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox-C9 OS=Oryzias latipes ...    30   3.8  
sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatu...    30   3.8  
sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseu...    30   4.9  
sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicu...    30   4.9  
sp|Q46J24|RPOC2_PROMT DNA-directed RNA polymerase subunit beta' ...    29   6.4  
sp|A2C4N0|RPOC2_PROM1 DNA-directed RNA polymerase subunit beta' ...    29   6.4  
sp|Q9LX16|EIL4_ARATH Putative ETHYLENE INSENSITIVE 3-like 4 prot...    29   6.4  
sp|Q60430|NDF1_MESAU Neurogenic differentiation factor 1 OS=Meso...    29   8.4  
sp|Q6INW9|IGF2B_XENLA Insulin-like growth factor II-B OS=Xenopus...    29   8.4  

>sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus
           norvegicus GN=Neurod1 PE=1 SV=1
          Length = 357

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 75  PHFCDVSCSFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY 236
           PH    S SFP HP      +P    PPY   +S H FH   P        +P+
Sbjct: 205 PHLPTASASFPVHP--YSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPF 256


>sp|Q60867|NDF1_MOUSE Neurogenic differentiation factor 1 OS=Mus
           musculus GN=Neurod1 PE=2 SV=2
          Length = 357

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 75  PHFCDVSCSFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY 236
           PH    S SFP HP      +P    PPY   +S H FH   P        +P+
Sbjct: 205 PHLPTASASFPVHP--YSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPF 256


>sp|Q13562|NDF1_HUMAN Neurogenic differentiation factor 1 OS=Homo
           sapiens GN=NEUROD1 PE=1 SV=2
          Length = 356

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = +3

Query: 75  PHFCDVSCSFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY 236
           PH    S SFP HP      +P    PPY   +S H FH   P        +P+
Sbjct: 205 PHLPTASASFPVHP--YSYQSPGLPSPPYGTMDSSHVFHVKPPPHAYSAALEPF 256


>sp|Q9VLT5|POE_DROME Protein purity of essence OS=Drosophila
            melanogaster GN=poe PE=1 SV=1
          Length = 5322

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 20/94 (21%)
 Frame = -3

Query: 321  GDEEACDTDSQEASISGSQC--------MVNDEAY----------ISMASVCKSVPKK-- 202
            G++++   DS E +++   C         +N   Y          + + SVC  V  K  
Sbjct: 1777 GEQDSLLDDSDEDTLNNKLCTFSQTQKEFMNQHWYHCHTCNMINTVGVCSVCARVCHKGH 1836

Query: 201  DLSYGSGDRNFCSCREAENASGSRVPLRLGEEEM 100
            D+SY      FC C   E+ S   +  R+G  E+
Sbjct: 1837 DVSYAKYGNFFCDCGAKEDGSCQALSRRIGSNEV 1870


>sp|Q90WW4|IGF2A_XENLA Insulin-like growth factor II-A OS=Xenopus
           laevis GN=igf2-A PE=2 SV=1
          Length = 217

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 39  DLTPFL*CLLRLPHFCDVSCSFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLI 218
           D+  F  C L L    +  C+ P   + +    P  ++PP S ++ YH+ H++  S   I
Sbjct: 100 DVCCFKSCDLEL---LETYCAKPTKNERDVSTAPATAIPPLSKQDLYHKHHHTKSSKYDI 156

Query: 219 CKQKPY*YRLRR 254
            ++K   +RLRR
Sbjct: 157 WQRKSI-HRLRR 167


>sp|Q9PVQ9|HXC9_ORYLA Homeobox protein Hox-C9 OS=Oryzias latipes
           GN=hoxc9 PE=2 SV=1
          Length = 262

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 93  SCSFPPHPDV-EELWTPTHSLPPYSYRNSYHRFHNSSPS 206
           SCSF P P V    W P HS     Y    H+ H S+ S
Sbjct: 53  SCSFAPKPPVFSSSWAPVHSQSSVVYHPYSHQPHLSTDS 91


>sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
           GN=aroK PE=3 SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 165 SCREAENASGSRVPLRLGEEEMNSLRRRSAEVAKDIKGKE 46
           S +E E  +G  VP+    E     RRR +EV  D+ GKE
Sbjct: 35  SDKEIERRTGVTVPMIFEYEGEAGFRRRESEVIADLTGKE 74


>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila
            pseudoobscura pseudoobscura GN=poe PE=3 SV=1
          Length = 5381

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 240  ISMASVCKSVPKK--DLSYGSGDRNFCSCREAENASGSRVPLRLGEEEM 100
            + + SVC  V  K  D+SY      FC C   E+ S   +  RLG  E+
Sbjct: 1843 VGVCSVCARVCHKGHDVSYAKYGNFFCDCGAKEDGSCQALSRRLGSGEV 1891


>sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicus
           GN=Mycbpap PE=2 SV=1
          Length = 928

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 207 KKDLSYGSGDRNFCSCREAENASGSRVPLRLGEEEMNSLRRRSAEVAKDIKGKELNPLL 31
           K+D   G+ ++   S R+ E   GS+ P +  E+ +NS ++++ +  K +K    + LL
Sbjct: 808 KEDRRGGAQEKKQLSARDKEEKKGSKTPSK--EDRLNSKKQKAKDDKKVVKSTSRDRLL 864


>sp|Q46J24|RPOC2_PROMT DNA-directed RNA polymerase subunit beta'
            OS=Prochlorococcus marinus (strain NATL2A) GN=rpoC2 PE=3
            SV=1
          Length = 1369

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 201  DLSYGSGDRNFCSCREAENASGSRVPLRLGEEEMNS 94
            D  + S D++  +C E EN  G +V LRLG   M S
Sbjct: 946  DGDFVSKDQSIDACGEIENIDGKKVKLRLGRPYMVS 981
tr_hit_id A7PBA1
Definition tr|A7PBA1|A7PBA1_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera
Align length 32
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919562|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E08.
         (332 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PBA1|A7PBA1_VITVI Chromosome chr16 scaffold_10, whole genom...    35   2.5  
tr|Q6FRP4|Q6FRP4_CANGA Similar to uniprot|Q04500 Saccharomyces c...    34   3.2  
tr|Q7RZF9|Q7RZF9_NEUCR Putative uncharacterized protein OS=Neuro...    33   5.5  
tr|Q6MFH5|Q6MFH5_NEUCR Putative uncharacterized protein B2C22.05...    33   5.5  
tr|A6S880|A6S880_BOTFB Putative uncharacterized protein OS=Botry...    33   7.2  
tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shot...    33   9.4  
tr|A4BQE2|A4BQE2_9GAMM Putative uncharacterized protein OS=Nitro...    33   9.4  
tr|Q38EI4|Q38EI4_9TRYP Putative uncharacterized protein OS=Trypa...    33   9.4  
tr|A8R0E5|A8R0E5_9BIVA Msx protein OS=Corbicula fluminea GN=Msx ...    33   9.4  

>tr|A7PBA1|A7PBA1_VITVI Chromosome chr16 scaffold_10, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014008001
           PE=4 SV=1
          Length = 350

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +2

Query: 53  PLMSFATSALLRRKLFISSSPRRRGTLDPDAF 148
           PLM+ A  A+LR+ L ++++PRR  +++PDAF
Sbjct: 98  PLMNEAAKAMLRQILKMNATPRREPSINPDAF 129


>tr|Q6FRP4|Q6FRP4_CANGA Similar to uniprot|Q04500 Saccharomyces
           cerevisiae YML093w YMJ3 OS=Candida glabrata
           GN=CAGL0H06985g PE=4 SV=1
          Length = 878

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
 Frame = -3

Query: 327 AAGDEEACDTDSQEASISGSQCMVNDEAYISMASVCKS--------VPKKDLSYGSGDRN 172
           ++ DEE+ D +SQE+     + + +DE  I +A+V           VPKK  +YG G+ N
Sbjct: 165 SSSDEESSDDESQESEDPFDE-ISDDEEDIDLANVTSKLVKETEMHVPKKLSNYGHGEAN 223

Query: 171 FCSCREAENASGSRVPLRLGEEEMNSL--RRRSAEVAKDIKGKELNPLLGL--LISRRAE 4
             +     + SG +   +L  EEM      + +   A  +KGK L   + L   I +R E
Sbjct: 224 DFALPSLTSESGIQ---KLSMEEMMGAIDDKHAVTQASLLKGKSLATAVPLPQRIQQRNE 280

Query: 3   R 1
           R
Sbjct: 281 R 281


>tr|Q7RZF9|Q7RZF9_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU04058 PE=4 SV=2
          Length = 289

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 99  SFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY*YRLRRLP 260
           S+PP P+ E L+ P HS    +   +YH ++ ++P  V +    P+   ++R P
Sbjct: 163 SYPPPPE-EMLYAPVHSYRAVTTEAAYHDYYTTAPVPVTLPSMAPFSDAIKREP 215


>tr|Q6MFH5|Q6MFH5_NEUCR Putative uncharacterized protein B2C22.050
           OS=Neurospora crassa GN=B2C22.050 PE=4 SV=1
          Length = 413

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 99  SFPPHPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY*YRLRRLP 260
           S+PP P+ E L+ P HS    +   +YH ++ ++P  V +    P+   ++R P
Sbjct: 287 SYPPPPE-EMLYAPVHSYRAVTTEAAYHDYYTTAPVPVTLPSMAPFSDAIKREP 339


>tr|A6S880|A6S880_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_08397
           PE=4 SV=1
          Length = 385

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +3

Query: 111 HPDVEELWTPTHSLPPYSYRNSYHRFHNSSPSLVLICKQKPY*YRLRRLPYTENH 275
           HP  ++++ P  S   Y Y   Y+ F  S+P++          +    +PY+E+H
Sbjct: 113 HPSTQQMYQPVQSTSGYPYSQEYYNFDASTPAVFSGYGSPDSSFSPVSMPYSEDH 167


>tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00028039001
           PE=3 SV=1
          Length = 467

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 66  LRLPHFCDV-SCSFPPH-PDVEELWTPTHSLPPYSYRNSYHRFHNSSPS 206
           L +P   D  SCSF P  P     WTP H+ P   Y    H+ H +S S
Sbjct: 44  LVMPECADYPSCSFAPKAPVFSTSWTPVHTQPSVGYHPYSHQAHLASDS 92


>tr|A4BQE2|A4BQE2_9GAMM Putative uncharacterized protein
           OS=Nitrococcus mobilis Nb-231 GN=NB231_05290 PE=4 SV=1
          Length = 257

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
 Frame = -3

Query: 324 AGD--EEACDTDSQEAS-------ISGSQCMVNDEAYISMASVCKSVPKKDLSYGSGDRN 172
           AGD   E CD   Q+ +        S  +C    E +         + ++DL    G  N
Sbjct: 150 AGDYNPEKCDPMQQDIAELQRNKDFSDDKCFGPKELWERERDYWNELYQEDLPLKEGYYN 209

Query: 171 FCSCRE---AENASGSRVPLRLGEEEMNSLRRRSAEVAKDIKGKE 46
             + +E   A+N   +R  LR  E  + SL R  AE  KD +G+E
Sbjct: 210 DAAKKESDAADNFENARDLLRRAETAVQSLEREYAEKCKDARGEE 254


>tr|Q38EI4|Q38EI4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb09.160.5640 PE=4 SV=1
          Length = 1857

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 270 SQCMVNDEAYISMASVCKSVPKKDLSYGSGDRNFCSCREA-ENASGSRVPLRLGEEEM 100
           SQC  +    ++ A+ C SV  +D S  +   N      A EN+SGS V  +L +EEM
Sbjct: 87  SQCGSSSADVVASAAACVSVVHEDFSESTEHINIAQTDNACENSSGSDVCTQLKDEEM 144


>tr|A8R0E5|A8R0E5_9BIVA Msx protein OS=Corbicula fluminea GN=Msx
           PE=3 SV=1
          Length = 347

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
 Frame = -3

Query: 240 ISMASVCKSVPKKDLSYGSG------------DRNFCSCREAENASGSRVPLRLGEEEMN 97
           I + +  + + KKD+S  S             D   C+ R +E+ S  + PLR G + + 
Sbjct: 26  IDVENTAEDLSKKDISPVSSQCANDRLSPEARDSKMCNGRVSESHSSFKAPLRFGVDSII 85

Query: 96  SLRRRSAEVAKDIKGKELNP 37
           S   R+  ++   KG+ L+P
Sbjct: 86  SHMSRNDSLSGGFKGRPLSP 105