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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919563
Clone id YMU001_000126_E09
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTGATCAAAAAACTAGTGCGAACAGCTGAAATAAGTGGTATACACAGCGGAGAAGTG
TCACATTAACACACCTTACACATTGCGTTGACTGCAACTTGTTATGCAAGGACCATCACC
GACAGCTATTTTGCCTTTTCTTGCAGTAGTGGAAGTCACCTTGCAACTACATATACAATT
GGTTTTGTACAAAGCAACTACATGTATTTGTTTAGCATGCCTTTACTGCTTAATTGCCAG
AATCTTTGATGAAAACAAGAAGAGCCCGCCGCCCTACATCCATAGCAGCATCTTCTTCCT
CTGCAATGCCCAGGTACCCTCCCGGCAATAAACTGCACATATCAAAAAAAGATGTCACGA
TGGAGCCTTTTGCAAGATGATTCATAACAGTCAAGCCAATGCTGGTTGCAAGCATTCTTC
TTGGTAACTCCGTTGCTTCCTCGCATCCAGCAGGTGGAGCTTTTCCACCACTCTGATCCT
CTGCCTCAAACTCCTCTTTATTGTCTGTGCTGTCATAATAGCTTTGCTTTGCAGATACAC
TCTTCCTAGGCCACGCACATCTCGGCCCTCCTTCG
■■Homology search results ■■ -
sp_hit_id Q9QY73
Definition sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus
Align length 64
Score (bit) 33.5
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919563|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E09.
         (575 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus G...    33   0.78 
sp|Q5R800|TMM59_PONAB Transmembrane protein 59 OS=Pongo abelii G...    33   1.3  
sp|Q4R8C8|TMM59_MACFA Transmembrane protein 59 OS=Macaca fascicu...    33   1.3  
sp|Q9BXS4|TMM59_HUMAN Transmembrane protein 59 OS=Homo sapiens G...    33   1.3  
sp|Q22472|RIC3_CAEEL Resistance to inhibitors of cholinesterase ...    32   3.0  
sp|Q3T0Q2|TMM59_BOVIN Transmembrane protein 59 OS=Bos taurus GN=...    31   5.1  
sp|Q2F7Z7|TMM59_PIG Transmembrane protein 59 OS=Sus scrofa GN=TM...    30   6.6  
sp|Q60ZR7|RIC3_CAEBR Resistance to inhibitors of cholinesterase ...    30   8.6  
sp|Q16825|PTN21_HUMAN Tyrosine-protein phosphatase non-receptor ...    30   8.6  
sp|Q2H9M1|IRS4_CHAGB Increased rDNA silencing protein 4 OS=Chaet...    30   8.6  

>sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus
           GN=Tmem59 PE=2 SV=2
          Length = 323

 Score = 33.5 bits (75), Expect = 0.78
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 380 IHNSQANAGC---KHSSW*LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPR 550
           + NSQA+      + S   LRC   +S W  +TTL+L + +L  +C   +A      +P 
Sbjct: 212 MRNSQAHRNYLEEEESDGFLRCLSLNSGWILTTTLVLSVMVLLWICCAAVATAVEQYVPP 271

Query: 551 PRTS 562
            + S
Sbjct: 272 EKLS 275


>sp|Q5R800|TMM59_PONAB Transmembrane protein 59 OS=Pongo abelii
           GN=TMEM59 PE=2 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           LRC   +S W  +TTL+L + +L  +C   +A      +P  + S
Sbjct: 231 LRCLSLNSGWILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLS 275


>sp|Q4R8C8|TMM59_MACFA Transmembrane protein 59 OS=Macaca
           fascicularis GN=TMEM59 PE=2 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           LRC   +S W  +TTL+L + +L  +C   +A      +P  + S
Sbjct: 231 LRCLSLNSGWILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLS 275


>sp|Q9BXS4|TMM59_HUMAN Transmembrane protein 59 OS=Homo sapiens
           GN=TMEM59 PE=2 SV=1
          Length = 323

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           LRC   +S W  +TTL+L + +L  +C   +A      +P  + S
Sbjct: 231 LRCLSLNSGWILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLS 275


>sp|Q22472|RIC3_CAEEL Resistance to inhibitors of cholinesterase
           protein 3 OS=Caenorhabditis elegans GN=ric-3 PE=1 SV=2
          Length = 378

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = -2

Query: 547 RKSVSAKQSYYDSTDNKEEFEAEDQSGGK 461
           +KS   K++Y+DS D+ +E E+E + GGK
Sbjct: 152 KKSKRKKRNYFDSEDDDDESESETKYGGK 180


>sp|Q3T0Q2|TMM59_BOVIN Transmembrane protein 59 OS=Bos taurus
           GN=TMEM59 PE=2 SV=1
          Length = 323

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           LRC   +S W  + TL+L + +L  +C   +A      +P  + S
Sbjct: 231 LRCLSLNSGWILTVTLVLSVMVLLWICCATVATAVEQYVPSEKLS 275


>sp|Q2F7Z7|TMM59_PIG Transmembrane protein 59 OS=Sus scrofa
           GN=TMEM59 PE=2 SV=1
          Length = 323

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           LRC   +S W  + TL+L + +L  +C   +A      +P  + S
Sbjct: 231 LRCLSLNSGWILTMTLVLSVMVLLWICCATVATAVEQYVPSEKLS 275


>sp|Q60ZR7|RIC3_CAEBR Resistance to inhibitors of cholinesterase
           protein 3 OS=Caenorhabditis briggsae GN=ric-3 PE=3 SV=1
          Length = 385

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 547 RKSVSAKQSYYDSTDNKEEFEAEDQSGGK 461
           +K+   K++Y+DS D+ E+ E E + GGK
Sbjct: 152 KKAKRKKRNYFDSEDDSEDSEMETKYGGK 180


>sp|Q16825|PTN21_HUMAN Tyrosine-protein phosphatase non-receptor
           type 21 OS=Homo sapiens GN=PTPN21 PE=1 SV=1
          Length = 1174

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 547 RKSVSAKQSYYDSTDNKEEFEAEDQSGGKAPPAGCEE 437
           +KS+S       S++ +E+ + E++SG +APPA   E
Sbjct: 698 KKSLSDATMLIHSSEEEEDEDFEEESGARAPPARARE 734


>sp|Q2H9M1|IRS4_CHAGB Increased rDNA silencing protein 4
           OS=Chaetomium globosum GN=IRS4 PE=3 SV=1
          Length = 741

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 424 VTPLLPRIQQVELFHHSDPLPQ 489
           VTP+ P I QV++FHH D  P+
Sbjct: 356 VTPVEPDIDQVDVFHHQDRNPK 377
tr_hit_id B5SPY3
Definition tr|B5SPY3|B5SPY3_9PAPI E2 OS=Sus scrofa papillomavirus type 1
Align length 37
Score (bit) 36.2
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919563|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E09.
         (575 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5SPY3|B5SPY3_9PAPI E2 OS=Sus scrofa papillomavirus type 1 GN...    36   1.3  
tr|Q6GNB1|Q6GNB1_XENLA MGC82908 protein OS=Xenopus laevis GN=MGC...    35   2.3  
tr|Q5XGQ9|Q5XGQ9_XENLA LOC495163 protein OS=Xenopus laevis GN=tm...    35   2.3  
tr|A9KRI4|A9KRI4_CLOPH Putative uncharacterized protein OS=Clost...    35   2.9  
tr|A9W0P0|A9W0P0_METEP Putative uncharacterized protein OS=Methy...    35   3.8  
tr|B7KZD7|B7KZD7_METCH Putative uncharacterized protein OS=Methy...    34   5.0  
tr|B1WBF5|B1WBF5_XENTR LOC100145768 protein OS=Xenopus tropicali...    34   6.5  
tr|A8L9T0|A8L9T0_FRASN Acyltransferase 3 OS=Frankia sp. (strain ...    34   6.5  
tr|A0KPI8|A0KPI8_AERHH Membrane protein, suppressor for copper-s...    34   6.5  

>tr|B5SPY3|B5SPY3_9PAPI E2 OS=Sus scrofa papillomavirus type 1 GN=E2
           PE=4 SV=1
          Length = 418

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 264 ARRPTSIAASSSSAMPRYPPGNKLHISKKDVTMEPFA 374
           ARRP ++ A S S +PR+ PG   H S  D T +P A
Sbjct: 255 ARRPQAVPADSPSPVPRWGPGQGKHPSTPDATAKPTA 291


>tr|Q6GNB1|Q6GNB1_XENLA MGC82908 protein OS=Xenopus laevis
           GN=MGC82908 PE=2 SV=1
          Length = 324

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           L+CF A+S W  S TL+L + +L  +C   +A      +P  + S
Sbjct: 232 LKCFSANSNWLISVTLVLSVLVLLWICCATVATAADQYIPSEKLS 276


>tr|Q5XGQ9|Q5XGQ9_XENLA LOC495163 protein OS=Xenopus laevis
           GN=tmem59 PE=2 SV=1
          Length = 322

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLIL-CLKLLFIVCAVIIALLCRYT 541
           L+CF A+S W  S TL+L  L LL+I CA +     +YT
Sbjct: 230 LKCFSANSNWLLSATLVLSVLVLLWICCATVATASDQYT 268


>tr|A9KRI4|A9KRI4_CLOPH Putative uncharacterized protein
           OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
           18823 / ISDg) GN=Cphy_1686 PE=4 SV=1
          Length = 359

 Score = 35.0 bits (79), Expect = 2.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
 Frame = +1

Query: 16  LVRTAEISGIHSGEVSH*HTLHIALT-------ATCYARTITDSYFAFSCSSGSHLATTY 174
           LV  A  + + S +V+H  TL +  +       ATC+     D  FA++ ++GSH  TTY
Sbjct: 217 LVTEAGTNALSSYKVNHNGTLSVISSSILNFQSATCWVALSEDGRFAYTSNAGSHTITTY 276

Query: 175 TIGF 186
            + +
Sbjct: 277 EVEY 280


>tr|A9W0P0|A9W0P0_METEP Putative uncharacterized protein
           OS=Methylobacterium extorquens (strain PA1) GN=Mext_0734
           PE=4 SV=1
          Length = 768

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 25/77 (32%), Positives = 33/77 (42%)
 Frame = +3

Query: 237 PESLMKTRRARRPTSIAASSSSAMPRYPPGNKLHISKKDVTMEPFAR*FITVKPMLVASI 416
           P +   T     P+   A+ SSA+P  P G K   +K D + +       TVKP   AS 
Sbjct: 161 PSAASGTPGGNTPSKPGATGSSAIPPNPAGAKATDAKPDTSAKAGTTGSSTVKPETPASG 220

Query: 417 LLGNSVASSHPAGGAFP 467
             G+S A      GA P
Sbjct: 221 SAGSSGAKPDATSGAKP 237


>tr|B7KZD7|B7KZD7_METCH Putative uncharacterized protein
           OS=Methylobacterium chloromethanicum CM4 GN=Mchl_0748
           PE=4 SV=1
          Length = 762

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 25/77 (32%), Positives = 34/77 (44%)
 Frame = +3

Query: 237 PESLMKTRRARRPTSIAASSSSAMPRYPPGNKLHISKKDVTMEPFAR*FITVKPMLVASI 416
           P +   T  +  P+   A+ SSA+P  P G K   +K D + +       TVKP   AS 
Sbjct: 155 PAAASGTPGSNAPSKPGATGSSAIPPNPVGAKATDAKPDTSAKAGTTGSSTVKPETPASG 214

Query: 417 LLGNSVASSHPAGGAFP 467
             G+S A      GA P
Sbjct: 215 SAGSSGAKPDATSGAKP 231


>tr|B1WBF5|B1WBF5_XENTR LOC100145768 protein OS=Xenopus tropicalis
           GN=LOC100145768 PE=2 SV=1
          Length = 323

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 428 LRCFLASSRWSFSTTLILCLKLLFIVCAVIIALLCRYTLPRPRTS 562
           L+CF  +S W  S TL+L + +L  +C   +A      +P  + S
Sbjct: 231 LKCFSTNSNWLLSATLVLSVLVLLWICCATVATAADQYIPSEKLS 275


>tr|A8L9T0|A8L9T0_FRASN Acyltransferase 3 OS=Frankia sp. (strain
           EAN1pec) GN=Franean1_5872 PE=4 SV=1
          Length = 435

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 481 EDQSGGKAPPAGCEEATELPRRMLATSIG--LTVMNHLAKGSIVTSFFDMCSLLPGGYLG 308
           ED SG  APPA         R +   +IG     ++ L   +++T FF    L+PGGYLG
Sbjct: 6   EDTSGAPAPPA---------RTVRRATIGGHNPALDGLRALAVLTVFFHHMDLVPGGYLG 56

Query: 307 I 305
           +
Sbjct: 57  V 57


>tr|A0KPI8|A0KPI8_AERHH Membrane protein, suppressor for
           copper-sensitivity A OS=Aeromonas hydrophila subsp.
           hydrophila (strain ATCC 7966 / NCIB 9240) GN=AHA_3741
           PE=4 SV=1
          Length = 126

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
 Frame = +2

Query: 446 SSRWSFSTTLILCLKLLFIVCAVIIALLC---RYT--LPRPRTSRP 568
           + +W  +TTL LCL+ LF   A++IALL    RYT  LP PR   P
Sbjct: 68  NGKWLSATTL-LCLEQLFFAVALLIALLAPLWRYTPPLPPPRAVSP 112