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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919565
Clone id YMU001_000126_E11
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTGAAAGAAGACTAGTCAATATTTATTATGTGCACAAAAACCACCAGAATACATCTCAAA
CTCTAGAAAATGAATGAATAATGAAATCGCTAGGTATAGGTAGGAAATGGGAGCTGGAGT
TCCTACGGTGTGTCTCGTAACTCATCATATGTAGGGTAGGTCAAATACAAAAGTTGCCAC
TCCCTCTCAATGTGCTCACATGATTGAAAGAATTAGTAGCTCAAAAACACTCCAACAAGG
AGAGAGGCAAAAGCCGTGGCAAGAAACGCAACTGGGGTTAAAGTAGCAGCATTATCATCA
CCAGTTGTGGGAGTTGGAGTAGGAGGTTCAACTTGTGCCATTGCACTTTGTCCGGCCATT
GCCAAAACACCCATCACCACGAGGATGGTAACAAGATTGGAGAAAGCAATCCTTCCACTG
ATTTGAGAGAGAGCCATTGTGATAAGGGAGGTTACTCTTGAGATCTAAAGTACTGCAAGA
AGAGAGGAAAACGCAGATCAAGCTCGAATTTGCGG
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919565|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E11.
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE...    32   1.8  
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p...    32   1.8  
sp|Q1LZ53|DNM3A_RAT DNA (cytosine-5)-methyltransferase 3A OS=Rat...    32   2.3  
sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A OS=M...    32   2.3  
sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A OS=H...    32   2.3  
sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A OS=G...    32   2.3  
sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae ...    31   3.0  
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE...    30   5.1  
sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE...    30   8.7  

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
           SV=1
          Length = 798

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = -3

Query: 402 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 235
           + SC  P G  C G+GR KCN                C   Y+   C  C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
           protein hypB OS=Synechocystis sp. (strain PCC 6803)
           GN=hypB PE=3 SV=1
          Length = 285

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 336 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 458
           C C+  G   ++HHH        S+   D +E H   G YS
Sbjct: 5   CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|Q1LZ53|DNM3A_RAT DNA (cytosine-5)-methyltransferase 3A OS=Rattus
           norvegicus GN=Dnmt3a PE=2 SV=1
          Length = 908

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/87 (26%), Positives = 33/87 (37%)
 Frame = -3

Query: 498 ICVFLSSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSY 319
           IC+   SC +L++    P   G +    K+CFL+  Y    DG        C G      
Sbjct: 489 ICI---SCGSLNVTLEHPLFIGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 545

Query: 318 SNSHNW***CCYFNPSCVSCHGFCLSP 238
            N++     CC     CV C    + P
Sbjct: 546 GNNN-----CC--RCFCVECVDLLVGP 565


>sp|O88508|DNM3A_MOUSE DNA (cytosine-5)-methyltransferase 3A OS=Mus
           musculus GN=Dnmt3a PE=1 SV=2
          Length = 908

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/87 (26%), Positives = 33/87 (37%)
 Frame = -3

Query: 498 ICVFLSSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSY 319
           IC+   SC +L++    P   G +    K+CFL+  Y    DG        C G      
Sbjct: 489 ICI---SCGSLNVTLEHPLFIGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 545

Query: 318 SNSHNW***CCYFNPSCVSCHGFCLSP 238
            N++     CC     CV C    + P
Sbjct: 546 GNNN-----CC--RCFCVECVDLLVGP 565


>sp|Q9Y6K1|DNM3A_HUMAN DNA (cytosine-5)-methyltransferase 3A OS=Homo
           sapiens GN=DNMT3A PE=1 SV=4
          Length = 912

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/87 (26%), Positives = 33/87 (37%)
 Frame = -3

Query: 498 ICVFLSSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSY 319
           IC+   SC +L++    P   G +    K+CFL+  Y    DG        C G      
Sbjct: 493 ICI---SCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 549

Query: 318 SNSHNW***CCYFNPSCVSCHGFCLSP 238
            N++     CC     CV C    + P
Sbjct: 550 GNNN-----CC--RCFCVECVDLLVGP 569


>sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A
           OS=Gallus gallus GN=DNMT3A PE=2 SV=1
          Length = 877

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/87 (26%), Positives = 33/87 (37%)
 Frame = -3

Query: 498 ICVFLSSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSY 319
           IC+   SC +L++    P   G +    K+CFL+  Y    DG        C G      
Sbjct: 458 ICI---SCGSLNVTLEHPLFIGGMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMC 514

Query: 318 SNSHNW***CCYFNPSCVSCHGFCLSP 238
            N++     CC     CV C    + P
Sbjct: 515 GNNN-----CC--RCFCVECVDLLVGP 534


>sp|Q04740|RNH1_YEAST Ribonuclease H OS=Saccharomyces cerevisiae
           GN=RNH1 PE=1 SV=2
          Length = 348

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 507 SSLICVFLSSCST---LDLKSNLPYHNGSLSNQWKDC 406
           SS  C  LSS +T     +KSN+P     + N WKDC
Sbjct: 93  SSSACSSLSSANTNTFYSVKSNVPNIESKIFNNWKDC 129


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
           SV=2
          Length = 769

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = -3

Query: 399 QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 235
           + C +PR   C G GR +CN          H+      Y  P C  C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE=1
           SV=2
          Length = 806

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = -3

Query: 402 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 235
           + SC  P G  C G+G  KCN                C   Y+   C  C G C SPC
Sbjct: 602 VDSCVSPEGGLCSGHGYCKCNRCQ-------------CLDGYYGALCDQCLG-CKSPC 645
tr_hit_id Q22Z13
Definition tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210
Align length 88
Score (bit) 40.4
E-value 0.052
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919565|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_E11.
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ...    40   0.052
tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1    35   2.2  
tr|A8NLF5|A8NLF5_COPC7 Putative uncharacterized protein OS=Copri...    33   8.3  

>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family
            protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_00117540 PE=4 SV=2
          Length = 2236

 Score = 40.4 bits (93), Expect = 0.052
 Identities = 27/88 (30%), Positives = 40/88 (45%)
 Frame = -3

Query: 492  VFLSSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSN 313
            V  + CS  D  S+    NGS SN    C LQ  + P+   C     T CN       ++
Sbjct: 1621 VLSNQCSLCD--SSCYTCNGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNS 1674

Query: 312  SHNW***CCYFNPSCVSCHGFCLSPCWS 229
            +      C + +PSC++C+G  +S C S
Sbjct: 1675 NK-----CIFCDPSCLTCNGPQISNCTS 1697



 Score = 35.8 bits (81), Expect = 1.3
 Identities = 28/92 (30%), Positives = 39/92 (42%)
 Frame = -3

Query: 483  SSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 304
            + CS  D  S+    NGS SN    C LQ  + P+   C  +    CN       S +  
Sbjct: 1224 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL- 1276

Query: 303  W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 208
                C   +PSC++C+G   S C S  + L L
Sbjct: 1277 ----CKICDPSCLTCNGSQSSNCTSCRQGLFL 1304



 Score = 35.0 bits (79), Expect = 2.2
 Identities = 28/92 (30%), Positives = 39/92 (42%)
 Frame = -3

Query: 483  SSCSTLDLKSNLPYHNGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 304
            + CS  D  S+    NGS SN    C LQ  + P+   C     T CN       S++  
Sbjct: 1024 NQCSQCD--SSCYTCNGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL- 1076

Query: 303  W***CCYFNPSCVSCHGFCLSPCWSVFELLIL 208
                C   + SC++C+G   S C S  + L L
Sbjct: 1077 ----CKVCDSSCLTCNGSYSSNCTSCRQGLFL 1104


>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1
          Length = 309

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 197 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 376
           H++E I+   T +   R+K + E    +   H+HHQL   E      P+HF  P P    
Sbjct: 68  HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122

Query: 377 PR 382
           PR
Sbjct: 123 PR 124


>tr|A8NLF5|A8NLF5_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_05810 PE=4 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -3

Query: 513 ANSSLICVFLSSCSTLDLKS----NLPYHNGSLSNQWKDCFLQSCYHPRG--DGCFGNGR 352
           A+ SL+ +F SS     L S    NLP++N +L + W   F    Y P G  D   G  R
Sbjct: 236 AHWSLMIMFFSSLELATLSSHSGYNLPFNNNALQHDWHHFFYTENYGPTGLLDSLHGTNR 295