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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919576
Clone id YMU001_000126_G01
Library
Length 486
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTGCAAAACTCAAATGTACTCTATTCACTCAGGCTTGTTTTACAAA
GCCAAACTAGTCAAATATTACAATGTGTCCATGACTGAATATCACTGGAATCAAGTTAAG
ATGCTAGACTCTGTTCAAATCTATTAATATGTTATCGTCGAAAGAAGACGTGAAGTGCAA
CTTGCACAATTTCTGAATACCAATTGAGCACAATACAATTGTGCTTCTTGGTGATATTGT
CTTCTCACTCTATTCGAAACTTTTACATCCCATTTACATGACTTTGTATGCACTAATAAT
GACAGGGGACAACAGTGCAACTAGCTATTTTCCCAAGGATCTATCTTTCTATACAATTTT
ACTACCTTGTTTTGGCGCCAACAATAAGTTGGTCTTACATAAGAATTGCTGAGTCAGGCT
CATTACCGTTCCTCAATACAATATTTTTCCCTTAACAGCTTCCAGCTGCTGTTGGACTCT
CTATAT
■■Homology search results ■■ -
sp_hit_id Q9P6L8
Definition sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription subunit 12 OS=Schizosaccharomyces pombe
Align length 78
Score (bit) 32.3
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919576|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G01.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription...    32   1.1  
sp|B0JWY5|NDHL_MICAN NAD(P)H-quinone oxidoreductase subunit L OS...    30   4.1  
sp|Q0U822|MON1_PHANO Vacuolar fusion protein MON1 OS=Phaeosphaer...    30   5.3  
sp|Q92819|HAS2_HUMAN Hyaluronan synthase 2 OS=Homo sapiens GN=HA...    30   5.3  
sp|P70312|HAS2_MOUSE Hyaluronan synthase 2 OS=Mus musculus GN=Ha...    30   6.9  
sp|O97711|HAS2_BOVIN Hyaluronan synthase 2 OS=Bos taurus GN=HAS2...    30   6.9  
sp|O35776|HAS2_RAT Hyaluronan synthase 2 OS=Rattus norvegicus GN...    29   9.1  

>sp|Q9P6L8|SRB8_SCHPO Mediator of RNA polymerase II transcription
           subunit 12 OS=Schizosaccharomyces pombe GN=srb8 PE=1
           SV=1
          Length = 1233

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
 Frame = +1

Query: 118 FKSINMLSSKEDVKCNLHNF*IPIEHNTIVLLGDIVFSLYSKLLHPIYM-----TLYALI 282
           +K   + + K+ ++   HN  +  +H  ++   D++  L   L HP Y      T ++ +
Sbjct: 697 YKDATVANRKDFIEFLFHNITVSSKHTAVIFTSDLLMVLKIALNHPPYFDDLATTTFSSL 756

Query: 283 MTGDNSATSYFPKDLSFY 336
           +  D      F K L FY
Sbjct: 757 LKRDECTILSFFKILQFY 774


>sp|B0JWY5|NDHL_MICAN NAD(P)H-quinone oxidoreductase subunit L
           OS=Microcystis aeruginosa (strain NIES-843) GN=ndhL PE=3
           SV=1
          Length = 79

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
 Frame = +2

Query: 296 TVQLAIFPRIYLSIQFYYLVLAPTISWSYIRIA-------ESGSLPFLNTIFFP 436
           T +  I   IYLS+   YL++ P + + Y+          E G + FL + FFP
Sbjct: 6   TQETIIIALIYLSLSVLYLLVIPAVIYYYLNTRWYVASSWERGFMYFLMSFFFP 59


>sp|Q0U822|MON1_PHANO Vacuolar fusion protein MON1 OS=Phaeosphaeria
           nodorum GN=MON1 PE=3 SV=1
          Length = 722

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 295 CPLSLLVHTKSCKWDVKVSNRVRRQY 218
           CPL    HT+SCKW + V +    QY
Sbjct: 626 CPLPRSSHTESCKWQLNVRHIHANQY 651


>sp|Q92819|HAS2_HUMAN Hyaluronan synthase 2 OS=Homo sapiens GN=HAS2
           PE=2 SV=1
          Length = 552

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 181 IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALIMTGDNSATSYFPKDLSFYTILLPCFG 360
           IP+     +LLG ++F++Y +   P   +   +++ G      Y+   L+ Y +L+   G
Sbjct: 479 IPVSVWFTILLGGVIFTIYKESKRPFSESKQTVLIVGTLLYACYWVMLLTLYVVLINKCG 538

Query: 361 ANNK 372
              K
Sbjct: 539 RRKK 542


>sp|P70312|HAS2_MOUSE Hyaluronan synthase 2 OS=Mus musculus GN=Has2
           PE=2 SV=3
          Length = 552

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 181 IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALIMTGDNSATSYFPKDLSFYTILLPCFG 360
           IP+     +LLG ++F++Y +   P   +   +++ G      Y+   L+ Y +L+   G
Sbjct: 479 IPVSVWFTILLGGVIFTIYKESKKPFSESKQTVLIVGTLIYACYWVMLLTLYVVLINKCG 538

Query: 361 ANNK 372
              K
Sbjct: 539 RRKK 542


>sp|O97711|HAS2_BOVIN Hyaluronan synthase 2 OS=Bos taurus GN=HAS2
           PE=2 SV=1
          Length = 552

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 181 IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALIMTGDNSATSYFPKDLSFYTILLPCFG 360
           IP+     +LLG ++F++Y +   P   +   +++ G      Y+   L+ Y +L+   G
Sbjct: 479 IPVSVWFTILLGGVIFTIYKESKKPFSESKQTVLIVGTLLYACYWVMLLTLYVVLINKCG 538

Query: 361 ANNK 372
              K
Sbjct: 539 RRKK 542


>sp|O35776|HAS2_RAT Hyaluronan synthase 2 OS=Rattus norvegicus
           GN=Has2 PE=2 SV=1
          Length = 552

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +1

Query: 181 IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALIMTGDNSATSYFPKDLSFYTILLPCFG 360
           IP+     +LLG ++F++Y +   P   +   +++ G      Y+   L+ Y +L+   G
Sbjct: 479 IPVSVWFTILLGGVIFTIYKESKKPFSESKQTVLIVGTLIYACYWVVLLTLYVVLINKCG 538

Query: 361 ANNK 372
              K
Sbjct: 539 RRKK 542
tr_hit_id Q4DKT5
Definition tr|Q4DKT5|Q4DKT5_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi
Align length 62
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919576|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G01.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4DKT5|Q4DKT5_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.1  
tr|A7AWH7|A7AWH7_BABBO Putative uncharacterized protein OS=Babes...    33   9.3  
tr|Q8SWL8|Q8SWL8_ENCCU Putative uncharacterized protein ECU01_07...    33   9.3  

>tr|Q4DKT5|Q4DKT5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053509569.30 PE=4 SV=1
          Length = 1464

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
 Frame = -2

Query: 364  WRQNKVVKLYRKIDPWENS*LHCCPLSLLVHTKSCKW-----------DVKVSNRVRRQY 218
            WR N V +       WEN  +HCC LS++  T +  +           D +V  RVRR  
Sbjct: 1355 WRDNSVEREMMGYSSWENFTVHCCCLSIVNLTATYPYYLLDVENWLCEDGRVKQRVRRDA 1414

Query: 217  HQ 212
            ++
Sbjct: 1415 YE 1416


>tr|A7AWH7|A7AWH7_BABBO Putative uncharacterized protein OS=Babesia
            bovis GN=BBOV_I003230 PE=4 SV=1
          Length = 2892

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 112  TLFKSINMLSSKEDVKCNLHNF*IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALI 282
            T+F +        DV C++HNF I +      +L +++FS      H   +++ ALI
Sbjct: 1800 TIFSNFATAFESSDVPCSMHNFVIDLAQTDFEVLCNVIFSGKYSYSHSFRLSVTALI 1856


>tr|Q8SWL8|Q8SWL8_ENCCU Putative uncharacterized protein ECU01_0750
           OS=Encephalitozoon cuniculi GN=ECU01_0750 PE=4 SV=1
          Length = 335

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +1

Query: 127 INMLSSKEDVKCNLHNF*IPIEHNTIVLLGDIVFSLYSKLLHPIYMTLYALIMTGDNSAT 306
           +N++ S +D K +LHNF I I +  I LL  ++F   + L + + + L+   +T  ++  
Sbjct: 182 MNLILSDDDGKRSLHNFYIDIAYMGITLLAYVIFIGITSLSYRLPLNLFRSALTILDALV 241

Query: 307 SYFPKDLSF 333
           S     LS+
Sbjct: 242 SKIKTFLSY 250