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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919582
Clone id YMU001_000126_G07
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGATGATGACCAAGAGGACGATACCACAGAGGGAAACCCAAATTCAAAGAAAGACGATGA
CGGCAATGATGATCTTGCAGACGCTCCAAACTAGAGTCAAAGGGGTAGGCTCAAATATCT
GAATCAATCAATCACAGTAGCCACCTGATACGAGCCCAGAAAAGACACGCGGTTAGACAC
ATGAAAGCTAGGTAGACCAACCCCAAGACCAGCAAACTGAAATCACTCAACAGCAAATGG
TATTTACAAAAGAAACAAGGAGAAATCCATCCAAAAAGAGTCAAACTCAGATCACATATC
AAACTTTTCCAATCAATATCTAAGTCTGAACAAAAGCTACAGAAAAGAAAAGCAGGTCCA
GATTCAAACTTTTCTTCAGGATGATGATGTGTCTAGAATCAAGAGAGTTATCAGATGCTT
TATGTCAAAGCCAAGAGGATGGTCTCTATTTACTACCACGAGCAGCAAACATGCAAAGTA
CCCTCTTATTCAAATATCATCTAGATA
■■Homology search results ■■ -
sp_hit_id Q9CK91
Definition sp|Q9CK91|RPOB_PASMU DNA-directed RNA polymerase subunit beta OS=Pasteurella multocida
Align length 60
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919582|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G07.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CK91|RPOB_PASMU DNA-directed RNA polymerase subunit beta OS...    33   1.00 
sp|P61243|YCF2_PHYPA Protein ycf2 OS=Physcomitrella patens GN=yc...    32   1.7  
sp|A6VKC5|RPOB_ACTSZ DNA-directed RNA polymerase subunit beta OS...    32   1.7  
sp|Q55FT5|COG4_DICDI Conserved oligomeric Golgi complex subunit ...    31   2.9  
sp|Q7Z6E9|RBBP6_HUMAN Retinoblastoma-binding protein 6 OS=Homo s...    31   2.9  
sp|P15059|SPI2_VACCW Serine proteinase inhibitor 2 OS=Vaccinia v...    30   4.9  
sp|P42926|SPI2_RABPU Serine proteinase inhibitor 2 OS=Rabbitpox ...    30   4.9  
sp|Q9Z9H5|RL17_THET8 50S ribosomal protein L17 OS=Thermus thermo...    30   5.0  
sp|Q72I33|RL17_THET2 50S ribosomal protein L17 OS=Thermus thermo...    30   5.0  
sp|Q86K84|VP13L_DICDI Vacuolar protein sorting-associated protei...    30   6.5  
sp|O95810|SDPR_HUMAN Serum deprivation-response protein OS=Homo ...    30   8.6  
sp|A1B053|RL17_PARDP 50S ribosomal protein L17 OS=Paracoccus den...    30   8.6  
sp|A7HBP6|RL17_ANADF 50S ribosomal protein L17 OS=Anaeromyxobact...    30   8.6  

>sp|Q9CK91|RPOB_PASMU DNA-directed RNA polymerase subunit beta
            OS=Pasteurella multocida GN=rpoB PE=3 SV=1
          Length = 1342

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 260  EKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVS-RIKRVIRCFMSKPR 436
            E+S+  E+  + +   + QY  L K + ++ +VQ    +Q DD++  + +V++ +++  R
Sbjct: 1000 EQSLSDEAQQNQLEQLAEQYEELRKEFERKLEVQRGKIIQGDDLAPGVLKVVKVYLAVKR 1059


>sp|P61243|YCF2_PHYPA Protein ycf2 OS=Physcomitrella patens GN=ycf2
           PE=3 SV=1
          Length = 2259

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 245 YKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQI 364
           Y + KEK++++  N  +IS F+N  LS   S +K+K+  I
Sbjct: 115 YSKYKEKNLKENFNKKNISTFTNHSLSKILSLKKKKKYSI 154


>sp|A6VKC5|RPOB_ACTSZ DNA-directed RNA polymerase subunit beta
            OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
            GN=rpoB PE=3 SV=1
          Length = 1342

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/60 (21%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 260  EKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVS-RIKRVIRCFMSKPR 436
            E+++  ES    +   + QY  L K +  + +V+    +Q DD++  +++V++ +++  R
Sbjct: 1000 EQTLSSESKQSRLEQLAEQYEELRKDFEHKLEVKRSKIIQGDDLAPGVQKVVKVYLAVKR 1059


>sp|Q55FT5|COG4_DICDI Conserved oligomeric Golgi complex subunit 4
           OS=Dictyostelium discoideum GN=cog4 PE=3 SV=1
          Length = 911

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 16/56 (28%), Positives = 33/56 (58%)
 Frame = +2

Query: 254 NKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVSRIKRVIRCF 421
           N E   ++E++ D ++  SN++L+ +KS+ K  Q +I++  +     R+K V+  F
Sbjct: 697 NLELKKKQENDRDQVNILSNEFLNCSKSFNKILQEEIESLFKSVQ-PRLKNVLNQF 751


>sp|Q7Z6E9|RBBP6_HUMAN Retinoblastoma-binding protein 6 OS=Homo
            sapiens GN=RBBP6 PE=1 SV=1
          Length = 1792

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
 Frame = +1

Query: 115  ISESINHSSHLIRAQKRHAVRHMKAR*TNPKTSKLKSLNSKWYLQKKQGEIHPKRVKLRS 294
            IS + +HSS  +   + H+    + R  +   S  +S +SK   +KK+ + H K  K + 
Sbjct: 1687 ISRNQSHSSPSVSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKK 1746

Query: 295  HIK---LFQSISKSEQKLQKRK 351
            H K       + KS++   K+K
Sbjct: 1747 HKKHAGTEVELEKSQKHKHKKK 1768


>sp|P15059|SPI2_VACCW Serine proteinase inhibitor 2 OS=Vaccinia
           virus (strain Western Reserve) GN=SPI-2 PE=3 SV=2
          Length = 345

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 233 ANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQ 379
           ANG       K ++KE N D +S  +  + S+NK Y +   V   +FL+
Sbjct: 34  ANGSTAEQLSKYVEKEENMDKVSAQNISFKSINKVYGRYSAVFKDSFLR 82


>sp|P42926|SPI2_RABPU Serine proteinase inhibitor 2 OS=Rabbitpox
           virus (strain Utrecht) GN=SPI-2 PE=3 SV=1
          Length = 345

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 233 ANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQ 379
           ANG       K ++KE N D +S  +  + S+NK Y +   V   +FL+
Sbjct: 34  ANGSTAEQLSKYVEKEENMDKVSAQNISFKSINKVYGRYSAVFKDSFLR 82


>sp|Q9Z9H5|RL17_THET8 50S ribosomal protein L17 OS=Thermus
           thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplQ
           PE=1 SV=1
          Length = 118

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 133 HSSH---LIRAQKRHAVRHMKAR*TNPKTSKLKSLNSKWYLQKKQGEIHPKRVKLR 291
           HSSH   L R Q +  + H +   T PK  +L+          K+G++H +R+ LR
Sbjct: 13  HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLR 68


>sp|Q72I33|RL17_THET2 50S ribosomal protein L17 OS=Thermus
           thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
           GN=rplQ PE=1 SV=1
          Length = 118

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 133 HSSH---LIRAQKRHAVRHMKAR*TNPKTSKLKSLNSKWYLQKKQGEIHPKRVKLR 291
           HSSH   L R Q +  + H +   T PK  +L+          K+G++H +R+ LR
Sbjct: 13  HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLR 68


>sp|Q86K84|VP13L_DICDI Vacuolar protein sorting-associated protein
           13-like protein OS=Dictyostelium discoideum GN=vps13l
           PE=3 SV=1
          Length = 653

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 197 PTPRPAN*NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEK 352
           P+P  ++ ++ST N    +N++K ++  SNS+         L+  K Y+KEK
Sbjct: 196 PSPSRSSESNSTTNNNNNKNEKKKLKNSSNSE---------LNRKKIYKKEK 238
tr_hit_id B4M1N0
Definition tr|B4M1N0|B4M1N0_DROVI GJ19338 OS=Drosophila virilis
Align length 112
Score (bit) 36.6
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919582|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G07.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4M1N0|B4M1N0_DROVI GJ19338 OS=Drosophila virilis GN=GJ19338 ...    37   0.71 
tr|B0YAD5|B0YAD5_ASPFC Putative uncharacterized protein OS=Asper...    34   3.5  
tr|A4DA45|A4DA45_ASPFU Putative uncharacterized protein OS=Asper...    34   3.5  
tr|B1V2C4|B1V2C4_CLOPE Sensory box/ggdef domain/hd domain protei...    34   4.6  
tr|B1RM76|B1RM76_CLOPE Putative sensory box-containing diguanyla...    34   4.6  
tr|O17101|O17101_CAEEL Putative uncharacterized protein OS=Caeno...    34   4.6  
tr|B0TC86|B0TC86_HELMI 50S ribosomal protein L17 OS=Heliobacteri...    34   4.7  
tr|B1BA57|B1BA57_CLOBO MutT/nudix family protein OS=Clostridium ...    33   7.8  
tr|Q8IE54|Q8IE54_PLAF7 Putative uncharacterized protein PF13_014...    33   7.8  

>tr|B4M1N0|B4M1N0_DROVI GJ19338 OS=Drosophila virilis GN=GJ19338 PE=4
            SV=1
          Length = 1100

 Score = 36.6 bits (83), Expect = 0.71
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
 Frame = +2

Query: 197  PTPRPAN*NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFL 376
            PTP PAN   +    I       +    +N +H +N +N  +S + S R E Q+Q+    
Sbjct: 936  PTPTPANVKRNVIPDIVTTQAISNNNNNNNQNHNNNNNNNNISGHTSSRDEAQLQLSLDR 995

Query: 377  QDDDVSRIK---------RVIRCFMSKPRGWSLFTTTSSKHAKYPLIQISSR 505
            Q+ + SR +            R   S P   +   T+SS HA  P  Q  S+
Sbjct: 996  QNSNCSRSEYGSPLAYPLSNSRRRSSTPTMATALNTSSSLHAFTPQSQSQSQ 1047


>tr|B0YAD5|B0YAD5_ASPFC Putative uncharacterized protein
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_084290 PE=4 SV=1
          Length = 296

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +2

Query: 194 RPTPRPAN*NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTF 373
           RP   PA   + TANG    N   + +KES S H  + ++++  L K  RK K++ +Q F
Sbjct: 219 RPLRAPAA--NGTANGTVNENGSLTQRKESKSGHTWDDNSEWEQLQKEIRKGKEM-VQPF 275

Query: 374 LQDDD 388
           +  ++
Sbjct: 276 VDQEE 280


>tr|A4DA45|A4DA45_ASPFU Putative uncharacterized protein
           OS=Aspergillus fumigatus GN=AFUA_8G02315 PE=4 SV=1
          Length = 296

 Score = 34.3 bits (77), Expect = 3.5
 Identities = 21/65 (32%), Positives = 35/65 (53%)
 Frame = +2

Query: 194 RPTPRPAN*NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTF 373
           RP   PA   + TANG    N   + +KES S H  + ++++  L K  RK K++ +Q F
Sbjct: 219 RPLRAPAA--NGTANGTVNENGSLTQRKESKSGHTWDDNSEWEQLQKEIRKGKEM-VQPF 275

Query: 374 LQDDD 388
           +  ++
Sbjct: 276 VDQEE 280


>tr|B1V2C4|B1V2C4_CLOPE Sensory box/ggdef domain/hd domain protein
           OS=Clostridium perfringens D str. JGS1721 GN=CJD_1272
           PE=4 SV=1
          Length = 599

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +2

Query: 221 NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVSRI 400
           N +  N  YK+N+E+ I K+     I + SN+Y + NK +++EK       + DD +++ 
Sbjct: 156 NDTLVNEYYKKNREEIIGKD-----IKSISNEYHNGNKLFKEEK-------ILDDFIAQD 203

Query: 401 KRVI 412
           K VI
Sbjct: 204 KEVI 207


>tr|B1RM76|B1RM76_CLOPE Putative sensory box-containing diguanylate
           cyclase OS=Clostridium perfringens NCTC 8239 GN=AC7_1155
           PE=4 SV=1
          Length = 599

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +2

Query: 221 NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVSRI 400
           N +  N  YK+N+E+ I K+     I + SN+Y + NK +++EK       + DD +++ 
Sbjct: 156 NDTLVNEYYKKNREEIIGKD-----IKSISNEYHNGNKLFKEEK-------ILDDFIAQD 203

Query: 401 KRVI 412
           K VI
Sbjct: 204 KEVI 207


>tr|O17101|O17101_CAEEL Putative uncharacterized protein
           OS=Caenorhabditis elegans GN=F42G2.2 PE=2 SV=1
          Length = 560

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +2

Query: 221 NHSTANGIYKRNKEKSI-QKESNSDHISNFSNQYLSLNK-SYRKEKQVQIQT-FLQDDDV 391
           NH   N     N E S+   + NSD++      Y  +   S +++K V + T +LQ D V
Sbjct: 85  NHILTNATLAENLEFSLLYVDINSDNVKAADRVYEQIKSLSQKQQKGVPVYTLYLQIDHV 144

Query: 392 SRIKRVIRCF 421
           S+++ V++CF
Sbjct: 145 SKLRDVLQCF 154


>tr|B0TC86|B0TC86_HELMI 50S ribosomal protein L17 OS=Heliobacterium
           modesticaldum (strain ATCC 51547 / Ice1) GN=rplQ PE=3
           SV=1
          Length = 112

 Score = 33.9 bits (76), Expect = 4.7
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 112 QISESINHSSHLIRAQKRHAVRHMKAR*TNPKTSKLKSLNSKWYLQKKQGEIHPKRVKL 288
           + S   NH   L+R      ++H K   T PK  +L+ +  K     KQG++H +R  L
Sbjct: 5   KFSRPTNHRRALLRNITTSLLKHGKIVTTEPKAKELRRIADKMITLGKQGDLHARRQAL 63


>tr|B1BA57|B1BA57_CLOBO MutT/nudix family protein OS=Clostridium
           botulinum C str. Eklund GN=CBC_0202 PE=4 SV=1
          Length = 173

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +2

Query: 257 KEKSIQKESNSDHISNFSNQYLSLNKSYRKEKQVQIQTFLQDDDVSRIKRV-IRCFMSKP 433
           KE+++QK      I  FSN  +++ + +  + Q++  + L DDDV+ I  + ++ F  K 
Sbjct: 89  KEENVQKVLEYKPIMGFSNSNMTIFEVHINKDQIKSNSILNDDDVTEITWIPLKQFQKKI 148

Query: 434 RGWSLF 451
           +   +F
Sbjct: 149 KEGKIF 154


>tr|Q8IE54|Q8IE54_PLAF7 Putative uncharacterized protein PF13_0148
            OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0148 PE=4
            SV=1
          Length = 4780

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = +2

Query: 215  N*NHSTANGIYKRNKEKSIQKESNSDHISNFSNQYLS--------LNKSYRKEKQVQIQT 370
            N NHS    I + NKE SI   SN++  +N +N  +         LNK   KE       
Sbjct: 4197 NKNHSLKKKIIELNKEISINVSSNNNICNNLNNDNIDDVTKISNPLNKQISKENFYYKLN 4256

Query: 371  FLQDDDVSRIKRVI 412
            FL++ +    K++I
Sbjct: 4257 FLKEYEEKEKKKII 4270