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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919584
Clone id YMU001_000126_G09
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000126_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAATGGGAGGGACACAATGGCAAGATGGTAATCCTCGGGGCAATGCACCCTATGGCTA
CAAGGATACTGGATTTGCGAATGTCGAGAACAGAGGTTTCATTCACAATCAAAGTGGAGG
AAGAAACTTTAGAAGTGGGGGTCTCAGGAGGTTCAATTAGTGGCTGTATGCTTCATAGGC
TATCGTCATCATGCAGTCGATGGTTGCTTGAGTGCTTTAGCAAGGTTTCTAGCTTTGAAA
AGGTGCAGTGTAACCTGCCAGTAATGGCTCATGCAGTGCAGGCACATGAACATGCGGATA
CCAGACAGGTTATGTAGTAATGTAATTCTTGCTTATGTCATTTTGGACTTTTTACTCTCA
GCTGCTAACCAACTACAGTGCAGGTAATTAGATTTTCTTAATACAGATCTAAACAGCCCC
AGGTAGCAAATGTGGAGGATGCTAATATGGGAGCTGGCCCTATGAGCAGCTTACAGAGTT
GGTGATGTTGGTACGGGTTTCTGTGC
■■Homology search results ■■ -
sp_hit_id Q9S9X4
Definition sp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana
Align length 41
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919584|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G09.
         (506 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 8 OS=Arab...    32   1.7  
sp|Q3UHK3|GREB1_MOUSE Protein GREB1 OS=Mus musculus GN=Greb1 PE=...    30   6.5  
sp|Q61086|FZD3_MOUSE Frizzled-3 OS=Mus musculus GN=Fzd3 PE=1 SV=1      30   8.4  
sp|Q9NPG1|FZD3_HUMAN Frizzled-3 OS=Homo sapiens GN=FZD3 PE=1 SV=1      30   8.4  

>sp|Q9S9X4|FBL8_ARATH Putative F-box/LRR-repeat protein 8
           OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1
          Length = 554

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +1

Query: 181 YRHHAVDGCLSALARFLA---LKRCSVTCQ*WLM---QCRH 285
           Y  +  D CLS + + L    LKRCS+ C+ WL    QCRH
Sbjct: 73  YISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRH 113


>sp|Q3UHK3|GREB1_MOUSE Protein GREB1 OS=Mus musculus GN=Greb1 PE=2
            SV=1
          Length = 1954

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = -2

Query: 217  KHSSNHRLHDDDSL*SIQPLIEPPETPTSKV-----SSSTLIVNETSVLDIRKSSILVAI 53
            +HS +     D SL + +  ++ P  P+S++     SSST  V   +VL ++ S   +A 
Sbjct: 1197 RHSPDLVPQPDSSLRTGRRSLQVPAAPSSQLSSSSGSSSTCAVPTANVLVLQASQCSMAK 1256

Query: 52   GCIAPRITILP 20
             C  P I  LP
Sbjct: 1257 ACRQPPIVFLP 1267


>sp|Q61086|FZD3_MOUSE Frizzled-3 OS=Mus musculus GN=Fzd3 PE=1 SV=1
          Length = 666

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 250 HCTFSKLETLLKHSSNHRLHDDDSL*SIQPLIEPPETPTSKVSSSTLIVNE 98
           H + S+L    +HSS+HRL++     SI+ L   P T  +  +S   ++ E
Sbjct: 611 HGSMSRLTDHSRHSSSHRLNEQSRHSSIRDLSNNPMTHITHGTSMNRVIEE 661


>sp|Q9NPG1|FZD3_HUMAN Frizzled-3 OS=Homo sapiens GN=FZD3 PE=1 SV=1
          Length = 666

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 250 HCTFSKLETLLKHSSNHRLHDDDSL*SIQPLIEPPETPTSKVSSSTLIVNE 98
           H + S+L    +HSS+HRL++     SI+ L   P T  +  +S   ++ E
Sbjct: 611 HGSMSRLTDHSRHSSSHRLNEQSRHSSIRDLSNNPMTHITHGTSMNRVIEE 661
tr_hit_id Q6N9M2
Definition tr|Q6N9M2|Q6N9M2_RHOPA Methoxyneurosporene dehydrogenase OS=Rhodopseudomonas palustris
Align length 53
Score (bit) 35.4
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919584|Adiantum capillus-veneris mRNA, clone:
YMU001_000126_G09.
         (506 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6N9M2|Q6N9M2_RHOPA Methoxyneurosporene dehydrogenase OS=Rhod...    35   1.6  
tr|A5K9H2|A5K9H2_PLAVI Putative uncharacterized protein OS=Plasm...    35   2.7  
tr|Q132K8|Q132K8_RHOPS FAD dependent oxidoreductase OS=Rhodopseu...    34   4.6  
tr|Q16UG7|Q16UG7_AEDAE Putative uncharacterized protein OS=Aedes...    34   4.6  
tr|Q16UG6|Q16UG6_AEDAE Putative uncharacterized protein OS=Aedes...    34   4.6  
tr|B4HAN4|B4HAN4_DROPE GL27064 OS=Drosophila persimilis GN=GL270...    33   7.8  

>tr|Q6N9M2|Q6N9M2_RHOPA Methoxyneurosporene dehydrogenase
           OS=Rhodopseudomonas palustris GN=crtD PE=3 SV=1
          Length = 519

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +3

Query: 15  HNGKMVILGAMHPMATRILDLRMSRTEVSFTIKVEEETLEVGVSGGSISGCML 173
           H G  +I G MH +A  + D     T    TI+ E+   EV VSGG  +G +L
Sbjct: 221 HEGVWIIEGGMHALAQALAD---CATSFGATIRYEQSVREVMVSGGRAAGVVL 270


>tr|A5K9H2|A5K9H2_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_080315 PE=4 SV=1
          Length = 1240

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -2

Query: 259 GRLHCTFSKLETLLKHSSNHRLHDDDSL*SIQPLIEPPETPTSKVSSSTLI 107
           G L C F+  ETLL  +  +    +++L +  PL EPP+ P + + ++TL+
Sbjct: 610 GGLPCEFASSETLLNEAPLNEAPLNETLLNESPLNEPPDKPANYMGATTLL 660


>tr|Q132K8|Q132K8_RHOPS FAD dependent oxidoreductase
           OS=Rhodopseudomonas palustris (strain BisB5) GN=RPD_3760
           PE=3 SV=1
          Length = 524

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +3

Query: 21  GKMVILGAMHPMATRILDLRMSRTEVSFTIKVEEETLEVGVSGGSISGCML 173
           G  +I G MH +A  + D   S   +  TI+ E+E  E+ VSGG  +G +L
Sbjct: 223 GVWIIEGGMHALARALADCAAS---LGATIRYEQEVREIMVSGGHAAGVIL 270


>tr|Q16UG7|Q16UG7_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL009901 PE=4 SV=1
          Length = 158

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 157 IEPPETPTSKVSSSTLIVNETSVLDIRKSSILVAIGCIAPRITIL 23
           +E P  PT + S + L++     LD  +S +LV+ GC+ P++  +
Sbjct: 99  LESPR-PTGESSPADLVIYSNKDLDAEESEVLVSYGCVTPKVNTI 142


>tr|Q16UG6|Q16UG6_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL009901 PE=4 SV=1
          Length = 181

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 157 IEPPETPTSKVSSSTLIVNETSVLDIRKSSILVAIGCIAPRIT 29
           +E P  PT + S + L++     LD  +S +LV+ GC+ P+++
Sbjct: 99  LESPR-PTGESSPADLVIYSNKDLDAEESEVLVSYGCVTPKVS 140


>tr|B4HAN4|B4HAN4_DROPE GL27064 OS=Drosophila persimilis GN=GL27064
            PE=4 SV=1
          Length = 3575

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
 Frame = -2

Query: 220  LKHSSNHRLHDDDSL*SIQPLIEPPETPTSKVSSSTLIV---------NETSVLDIRKSS 68
            + H   H+ H        QP  +PP TPT    ++T            + TS   I  +S
Sbjct: 2867 MHHHQQHQQHQQHQQHQQQPHSQPPPTPTGHTRTTTTTTTPTRPVEQQSSTSSKTIMHAS 2926

Query: 67   ILVAIGCIAPRITILPLC 14
            I+ A   +A   T+ P C
Sbjct: 2927 IIKAAAGVASSATLPPAC 2944