BP919601
Clone id YMU001_000127_A07
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_A07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTAAAATCATCATCATCATCAATGCCCGAGGATGCCAAGCATCAGGTGTTGTCCAAGAAA
GTTTGAAAGGAGGCAAAGCCCAAAGAGGGAAGATGTCTAACCAGGAAGAGGCTTTGTTGG
CCCTCCTATGTCCGGCAAGGCGAGCCTCCTTTGGAAGATGTGACCAAGACCTAGAAGGGG
AGGATGTCGAAGATGAGATCCCAGAGTTGCTCTTGCACACCCTGCATCCAGTTGTAGTGG
ACGGTCAAGAATATCTCTTCCTTGATGACATTACCCACTCCCTTGAACGCATAGGATGAA
TCCCTCTCTATTCTTGCAATATATGATGGGGTTCTTGATACGAAGAATCCTAGTCAAAAG
AGCGAGTTCTAAGTAGACTACTCCTCTTCTCCCTTCATCAACACGTTTTCCTTGCCAGAG
GAATATAATGCCATGAATTCCCTCATGGTGGCAACTCTACAAACCATTGAT
■■Homology search results ■■ -
sp_hit_id O28231
Definition sp|O28231|Y2048_ARCFU Uncharacterized protein AF_2048 OS=Archaeoglobus fulgidus
Align length 64
Score (bit) 32.7
E-value 0.73
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919601|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_A07.
(450 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O28231|Y2048_ARCFU Uncharacterized protein AF_2048 OS=Archaeo... 33 0.73
sp|A3QB25|RUMB_SHELP 23S rRNA (uracil-5-)-methyltransferase rumB... 30 4.7
sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo sap... 30 6.3
sp|A6WS34|RUMB_SHEB8 23S rRNA (uracil-5-)-methyltransferase rumB... 29 8.0
sp|A3D0Y0|RUMB_SHEB5 23S rRNA (uracil-5-)-methyltransferase rumB... 29 8.0

>sp|O28231|Y2048_ARCFU Uncharacterized protein AF_2048
OS=Archaeoglobus fulgidus GN=AF_2048 PE=4 SV=1
Length = 307

Score = 32.7 bits (73), Expect = 0.73
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Frame = -2

Query: 323 FVSRTPSYIARIERDSSYAFKGVGNVIKEEI-----------FLTVHYNWMQGVQEQLWD 177
F ++T SY++RI +YAF G+V+K+ I F YN+ E++W
Sbjct: 183 FGNKTYSYLSRINGSFAYAFFAYGDVVKQWIRVGNESPADFFFEGYRYNFNNSSYEKVWA 242

Query: 176 LIFD 165
+ F+
Sbjct: 243 MHFE 246


>sp|A3QB25|RUMB_SHELP 23S rRNA (uracil-5-)-methyltransferase rumB
OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4)
GN=rumB PE=3 SV=1
Length = 379

Score = 30.0 bits (66), Expect = 4.7
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Frame = +3

Query: 165 VEDEIPELL------------LHTLHPVVVDGQEYLFLDDITHSLERIG*IPLY 290
+E E+P LL L +H +++G+E +FL + T E +PLY
Sbjct: 151 IERELPRLLAEHPEIKVVSVNLQPVHMAILEGEEEIFLTEATRLEEEFNGVPLY 204


>sp|O95248|MTMR5_HUMAN Myotubularin-related protein 5 OS=Homo sapiens
GN=SBF1 PE=1 SV=3
Length = 1867

Score = 29.6 bits (65), Expect = 6.3
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1

Query: 22 QVLSKKV*KEAKPKEGRC-LTRKRLCWPSYVRQGEPPLED 138
+ LS+ + K AK GR +TRK+ PS+ +G+PP ED
Sbjct: 1049 RTLSRNLVKNAKKTIGRQHVTRKKYNPPSWEHRGQPPPED 1088


>sp|A6WS34|RUMB_SHEB8 23S rRNA (uracil-5-)-methyltransferase rumB
OS=Shewanella baltica (strain OS185) GN=rumB PE=3 SV=1
Length = 390

Score = 29.3 bits (64), Expect = 8.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Frame = +3

Query: 159 EDVEDEIPELL------------LHTLHPVVVDGQEYLFLDDITHSLERIG*IPLY 290
E +E E+P LL + +H +++G E +FL + T ER +PL+
Sbjct: 162 ERIERELPALLAEYPQIKVVSVNIQPIHMAILEGDEEIFLTENTRLEERFNHVPLF 217


>sp|A3D0Y0|RUMB_SHEB5 23S rRNA (uracil-5-)-methyltransferase rumB
OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rumB PE=3 SV=1
Length = 390

Score = 29.3 bits (64), Expect = 8.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Frame = +3

Query: 159 EDVEDEIPELL------------LHTLHPVVVDGQEYLFLDDITHSLERIG*IPLY 290
E +E E+P LL + +H +++G E +FL + T ER +PL+
Sbjct: 162 ERIERELPALLAEYPQIKVVSVNIQPIHMAILEGDEEIFLTENTRLEERFNHVPLF 217


tr_hit_id Q01XD0
Definition tr|Q01XD0|Q01XD0_SOLUE Peptidase C45, acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase OS=Solibacter usitatus (strain Ellin6076)
Align length 42
Score (bit) 33.1
E-value 7.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919601|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_A07.
(450 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q01XD0|Q01XD0_SOLUE Peptidase C45, acyl-coenzyme A:6-aminopen... 33 7.2

>tr|Q01XD0|Q01XD0_SOLUE Peptidase C45, acyl-coenzyme
A:6-aminopenicillanic acid acyl-transferase
OS=Solibacter usitatus (strain Ellin6076) GN=Acid_4726
PE=3 SV=1
Length = 466

Score = 33.1 bits (74), Expect = 7.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2

Query: 281 DSSYAFKGVGNVIKEEIFLTVHYNWMQGVQEQLWDLIFDILP 156
D AF G+ K+ + H NW + W++IFD+ P
Sbjct: 158 DHCSAFVATGSYTKDHRIIIAHNNWTSYSSGERWNIIFDVTP 199