BP919607
Clone id YMU001_000127_B01
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_B01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CATACATCGAAATAACTTTCTTAGAGATACAACTCAAGCCTTTCAGAGGCCACCAACAAA
CCACCTTGCTTCTTTAACTGCATTTGCAAACTATTCACATCAACTATACACATATGCACT
CGTGACTCTAGACTTATCACTTCTCCTTATAAAAATAAGCCCTGTACATACCCAGATTGG
GTATGGCTTGCCATAATTCTTACACTTTCAGCAAGATAAGAAATCCTGCCAATGCACGTG
AAGGATACATATCATATGCAGAACCTTTCACACCAGACAACCTCTGAATACTATGTACAG
TGCTCAATCATTCACTCTGGAAAGCCAGGTATGTCCAAAGGTTAACCTTTCTTTTCCCGG
TGCCAGTCGTAACACTCGTGCAAAACAAACTGCAAATCTTTCTTTAACCCATGTCCACCT
CCGGCGCAAATAGATTGGCCATATAACCATCGAACCCAGCCTGTCTTCCATCCAGAATAA
GAGCTTGGTTAAATGCCTGGCTTCCAAAATATGTGTCACCACTCTTTGAGCAAGCATCCA
TAACAGTTCGGCACACCACCATATCTGGTTCCACTGGTAAATTCTCTATC
■■Homology search results ■■ -
sp_hit_id A8MQA3
Definition sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana
Align length 57
Score (bit) 38.5
E-value 0.025
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919607|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_B01.
(590 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protei... 39 0.025
sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protei... 38 0.033
sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protei... 37 0.074
sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containi... 36 0.13
sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containi... 36 0.16
sp|Q9XIE2|PDR8_ARATH Pleiotropic drug resistance protein 8 OS=Ar... 36 0.16
sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protei... 34 0.48
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei... 34 0.62
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protei... 33 0.81
sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protei... 33 0.81
sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protei... 33 0.81
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei... 33 1.1
sp|Q5XEY7|PP309_ARATH Pentatricopeptide repeat-containing protei... 33 1.1
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei... 33 1.1
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei... 33 1.4
sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protei... 33 1.4
sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protei... 32 1.8
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 32 1.8
sp|P75472|Y308_MYCPN Uncharacterized protein MPN_308 OS=Mycoplas... 32 2.4
sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protei... 32 2.4
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei... 32 2.4
sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protei... 32 2.4
sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protei... 32 3.1
sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protei... 32 3.1
sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protei... 32 3.1
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei... 32 3.1
sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containi... 32 3.1
sp|Q97JE0|ARAA2_CLOAB L-arabinose isomerase 2 OS=Clostridium ace... 32 3.1
sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protei... 31 4.0
sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protei... 31 4.0

>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein
At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595

Score = 38.5 bits (88), Expect = 0.025
Identities = 18/57 (31%), Positives = 36/57 (63%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPE 419
I+++P++P++V+ RT++ AC+ GD+ A Q L L+ +G ++N++A E
Sbjct: 383 IKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 439


>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein
At2g37320 OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500

Score = 38.1 bits (87), Expect = 0.033
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
IEN+P++P+ V+ +++ +C GD + G +A + L+L+ A +ANL+A
Sbjct: 381 IENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLEPDCAATHVQLANLYA 435


>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein
At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1
Length = 786

Score = 37.0 bits (84), Expect = 0.074
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
IE +P+EPD+V +++ AC + G A + L+L+ +G +ANL++
Sbjct: 574 IEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYS 628


>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing
protein At5g59200, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-E41 PE=3 SV=1
Length = 544

Score = 36.2 bits (82), Expect = 0.13
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
IEN+P+EPD ++ T++ AC G+ G + + + +G ++NL+A
Sbjct: 415 IENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYA 469


>sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing
protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68
PE=3 SV=1
Length = 462

Score = 35.8 bits (81), Expect = 0.16
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I +P++P+ V+ RT++ ACS G+ G + + LD G ++N++A
Sbjct: 335 INQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYA 389


>sp|Q9XIE2|PDR8_ARATH Pleiotropic drug resistance protein 8
OS=Arabidopsis thaliana GN=PDR8 PE=1 SV=1
Length = 1469

Score = 35.8 bits (81), Expect = 0.16
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -3

Query: 573 WNQIWWCAELLWMLAQRVVTHILEARHLTKLLFWMED-RLGSMVI--WPIYLRRRWTWVK 403
W +W + L + VV + R + K+ +LG+MV+ W +Y ++ W W+
Sbjct: 714 WGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWIS 773

Query: 402 ERFAVCFARVLRL 364
+CF + +
Sbjct: 774 VGALLCFTALFNI 786


>sp|Q9ZQA1|PP188_ARATH Pentatricopeptide repeat-containing protein
At2g36730 OS=Arabidopsis thaliana GN=PCMP-E44 PE=2 SV=1
Length = 501

Score = 34.3 bits (77), Expect = 0.48
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACS---KSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I+ +P EPD VV RT++ ACS D G + + + L+ +++G +AN FA
Sbjct: 373 IKKMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFA 430


>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548

Score = 33.9 bits (76), Expect = 0.62
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
+E++ +EP+ +V RT++ AC G+ G A + L + ++G ++N++A
Sbjct: 439 VESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYA 493


>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E86 PE=2 SV=1
Length = 768

Score = 33.5 bits (75), Expect = 0.81
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILD 470
I+ + +EPD+VV +T++ AC G+ + +A L +D
Sbjct: 633 IDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKID 672


>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic OS=Arabidopsis thaliana
GN=PCMP-E69 PE=2 SV=1
Length = 895

Score = 33.5 bits (75), Expect = 0.81
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I N+ ++PD +V T++ AC G+ G A +A+ L+ AG ++N+ A
Sbjct: 812 INNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLSNILA 866


tr_hit_id A7QI70
Definition tr|A7QI70|A7QI70_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera
Align length 59
Score (bit) 42.0
E-value 0.026
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919607|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_B01.
(590 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QI70|A7QI70_VITVI Chromosome chr17 scaffold_101, whole geno... 42 0.026
tr|A5B7G0|A5B7G0_VITVI Putative uncharacterized protein OS=Vitis... 42 0.026
tr|A7Q1A2|A7Q1A2_VITVI Chromosome chr10 scaffold_43, whole genom... 42 0.034
tr|A5AT77|A5AT77_VITVI Putative uncharacterized protein OS=Vitis... 42 0.034
tr|A7PRP0|A7PRP0_VITVI Chromosome chr14 scaffold_27, whole genom... 41 0.044
tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome... 40 0.075
tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis... 40 0.075
tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subs... 40 0.099
tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.099
tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.099
tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea m... 39 0.17
tr|Q10MC4|Q10MC4_ORYSJ Os03g0314400 protein OS=Oryza sativa subs... 39 0.29
tr|O49549|O49549_ARATH Putative uncharacterized protein F7J7.10 ... 39 0.29
tr|A7PCR5|A7PCR5_VITVI Chromosome chr17 scaffold_12, whole genom... 39 0.29
tr|A2XFZ4|A2XFZ4_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.29
tr|A7QGA5|A7QGA5_VITVI Chromosome undetermined scaffold_91, whol... 38 0.37
tr|B4FZF5|B4FZF5_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.64
tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom... 37 0.64
tr|Q6DT52|Q6DT52_ARALP AT1G74600 (Fragment) OS=Arabidopsis lyrat... 37 0.83
tr|Q10K51|Q10K51_ORYSJ Pentatricopeptide, putative (Putative unc... 37 0.83
tr|A7QI90|A7QI90_VITVI Chromosome chr17 scaffold_101, whole geno... 37 0.83
tr|A7PD58|A7PD58_VITVI Chromosome chr17 scaffold_12, whole genom... 37 0.83
tr|A2Q4J6|A2Q4J6_MEDTR Tetratricopeptide-like helical OS=Medicag... 37 0.83
tr|Q0IZR0|Q0IZR0_ORYSJ Os09g0555400 protein OS=Oryza sativa subs... 37 1.1
tr|A5AF05|A5AF05_VITVI Putative uncharacterized protein OS=Vitis... 37 1.1
tr|A2Z3X5|A2Z3X5_ORYSI Putative uncharacterized protein OS=Oryza... 37 1.1
tr|Q6Z0F9|Q6Z0F9_ORYSJ Os08g0340900 protein OS=Oryza sativa subs... 36 1.4
tr|B8B9V6|B8B9V6_ORYSI Putative uncharacterized protein OS=Oryza... 36 1.4
tr|A7PHS8|A7PHS8_VITVI Chromosome chr17 scaffold_16, whole genom... 36 1.4
tr|A3BS46|A3BS46_ORYSJ Putative uncharacterized protein OS=Oryza... 36 1.4

>tr|A7QI70|A7QI70_VITVI Chromosome chr17 scaffold_101, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00000117001
PE=4 SV=1
Length = 592

Score = 42.0 bits (97), Expect = 0.026
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
++N+P++PDM+V RT++ AC G+ +Q N L +++ ++NLFA +
Sbjct: 505 VQNMPIKPDMIVWRTLLGACHTQGNISLANQVMNYLCELGPKKSEDYVLLSNLFASNAE 563


>tr|A5B7G0|A5B7G0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011618 PE=4 SV=1
Length = 529

Score = 42.0 bits (97), Expect = 0.026
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
++N+P++PDM+V RT++ AC G+ +Q N L +++ ++NLFA +
Sbjct: 442 VQNMPIKPDMIVWRTLLGACXXQGNISLANQVMNXLCELGPKKSEDYVLLSNLFASNAE 500


>tr|A7Q1A2|A7Q1A2_VITVI Chromosome chr10 scaffold_43, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028372001
PE=4 SV=1
Length = 613

Score = 41.6 bits (96), Expect = 0.034
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPE 419
I+N+P++P+ VV RT++ AC+ G G A Q L L+ + +G ++NL+A E
Sbjct: 401 IQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASE 457


>tr|A5AT77|A5AT77_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_016806 PE=4 SV=1
Length = 348

Score = 41.6 bits (96), Expect = 0.034
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPE 419
I+N+P++P+ VV RT++ AC+ G G A Q L L+ + +G ++NL+A E
Sbjct: 136 IQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASE 192


>tr|A7PRP0|A7PRP0_VITVI Chromosome chr14 scaffold_27, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022577001
PE=4 SV=1
Length = 745

Score = 41.2 bits (95), Expect = 0.044
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFAPEVD 413
IE++P+ PD+ ++ AC K GDT G + + + L GF ++N+FA + D
Sbjct: 533 IESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGD 591


>tr|A7PL13|A7PL13_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019394001
PE=4 SV=1
Length = 812

Score = 40.4 bits (93), Expect = 0.075
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
IE +P+EP +V R+++ AC +G+ G A A+ D + +G ++N+FA
Sbjct: 679 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 733


>tr|A5AZY0|A5AZY0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_038220 PE=4 SV=1
Length = 732

Score = 40.4 bits (93), Expect = 0.075
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
IE +P+EP +V R+++ AC +G+ G A A+ D + +G ++N+FA
Sbjct: 600 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFA 654


>tr|Q6F382|Q6F382_ORYSJ Os03g0795200 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0021G19.15 PE=4 SV=1
Length = 611

Score = 40.0 bits (92), Expect = 0.099
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I+ LP++P ++ RT++ AC+ GD G + F + L LD G +NL A
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452


>tr|A3ANL0|A3ANL0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012382 PE=4 SV=1
Length = 611

Score = 40.0 bits (92), Expect = 0.099
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I+ LP++P ++ RT++ AC+ GD G + F + L LD G +NL A
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452


>tr|A2XMV7|A2XMV7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_13880 PE=4 SV=1
Length = 671

Score = 40.0 bits (92), Expect = 0.099
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -2

Query: 589 IENLPVEPDMVVCRTVMDACSKSGDTYFGSQAFNQALILDGRQAGFDGYMANLFA 425
I+ LP++P ++ RT++ AC+ GD G + F + L LD G +NL A
Sbjct: 398 IDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCA 452