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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919630
Clone id YMU001_000127_D02
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCAGTTGTTTAGAAGAGACTTAAGAATGGATGATAGAGATCCAATGATATTGAATTATCC
CCAATATGTCGGAAATCAAGCTAAAAGTGGTCCATAACTAAATCAGGATATAGGAAAGTC
AATACTCAAGTTTGGTCCAAAATAGACATCTAAAGATAAAAAAAATCCTAAATTCTCAGG
ATTCTAGCTATAAATGGTCATTTTGACCCATGTGAAGGAGAAACAATTTAAATCCCAAAC
GTTTATGACCAAGGGCTTAGAGAATATTTCTAAATGCTTCACCATAAGTTTGGTGAAATT
TGGGCTTAAAACATGAATTGCGATGTATGTATCTCATGTGCAAAGTTGGTAGATTTTGGG
TCCCAAGTGTATGCAAGTGTCCAAATCGTCAAGTGAGAGAATTGTGCAAGATTGGTTAGA
AATCCAAGAGATTTGCTACTTCAAAGAGATAAAGTGTCAAAGTAAGGATTTCGGGGGGAC
AGCTCCA
■■Homology search results ■■ -
sp_hit_id Q9Y2C9
Definition sp|Q9Y2C9|TLR6_HUMAN Toll-like receptor 6 OS=Homo sapiens
Align length 64
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919630|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_D02.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y2C9|TLR6_HUMAN Toll-like receptor 6 OS=Homo sapiens GN=TLR...    31   3.4  
sp|Q9HM29|SYV_THEAC Valyl-tRNA synthetase OS=Thermoplasma acidop...    30   5.8  
sp|Q15399|TLR1_HUMAN Toll-like receptor 1 OS=Homo sapiens GN=TLR...    30   7.6  
sp|A8MZH6|OOSP1_HUMAN Oocyte-secreted protein 1 homolog OS=Homo ...    29   9.8  
sp|Q54N86|FBXAL_DICDI F-box/WD repeat-containing protein A-like ...    29   9.9  

>sp|Q9Y2C9|TLR6_HUMAN Toll-like receptor 6 OS=Homo sapiens GN=TLR6
           PE=2 SV=1
          Length = 796

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -2

Query: 429 SWISNQSCTILSLDDLDTCIHL-----GPKIYQL---CT*DTYIAIHVLSPNFTKLMVKH 274
           +W+ ++    L  +D+  C+H      G  I +    C   +Y +I VLSPNF +    H
Sbjct: 654 AWVKSELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCH 713

Query: 273 LEIF 262
            E++
Sbjct: 714 YELY 717


>sp|Q9HM29|SYV_THEAC Valyl-tRNA synthetase OS=Thermoplasma
           acidophilum GN=valS PE=3 SV=1
          Length = 791

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 368 CMQVSKSSSERIVQDWLEIQEICYFKE 448
           C ++S+SS + +++ W  I   CYFK+
Sbjct: 108 CKEISESSEKSLLEGWKRIGMSCYFKD 134


>sp|Q15399|TLR1_HUMAN Toll-like receptor 1 OS=Homo sapiens GN=TLR1
           PE=1 SV=3
          Length = 786

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -2

Query: 426 WISNQSCTILSLDDLDTCIHL-----GPKIYQ---LCT*DTYIAIHVLSPNFTKLMVKHL 271
           W+ N+    L  + +  C+H      G  I +    C   +Y +I VLSPNF +    H 
Sbjct: 650 WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHY 709

Query: 270 EIF 262
           E++
Sbjct: 710 ELY 712


>sp|A8MZH6|OOSP1_HUMAN Oocyte-secreted protein 1 homolog OS=Homo
           sapiens GN=OOSP1 PE=3 SV=1
          Length = 123

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 401 FSHLTIWTLAYTWDPKSTNFAHEIHTSQFMF*AQISPNLW 282
           + H  IWT A  W       A ++H +QF F A+I P ++
Sbjct: 12  YLHSLIWTCAGDWS------AIQVHCTQFWFFARIKPTIF 45


>sp|Q54N86|FBXAL_DICDI F-box/WD repeat-containing protein A-like
            protein OS=Dictyostelium discoideum GN=DDB_G0285445 PE=3
            SV=1
          Length = 1178

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 200  ILTHVKEKQFKSQTFMTKGLENISKCFTISLVKF 301
            I T  K+K+FKS    TK  E+ ++C   S++ F
Sbjct: 901  IFTGSKDKEFKSWNIATKQCESTTRCGASSVISF 934
tr_hit_id B4YE28
Definition tr|B4YE28|B4YE28_HYLLA Toll-like receptor 6 OS=Hylobates lar
Align length 64
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919630|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_D02.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4YE28|B4YE28_HYLLA Toll-like receptor 6 OS=Hylobates lar PE=...    33   9.3  
tr|B3Y644|B3Y644_PONPY Toll-like receptor 6 OS=Pongo pygmaeus GN...    33   9.3  

>tr|B4YE28|B4YE28_HYLLA Toll-like receptor 6 OS=Hylobates lar PE=4
           SV=1
          Length = 796

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -2

Query: 429 SWISNQSCTILSLDDLDTCIHL-----GPKIYQL---CT*DTYIAIHVLSPNFTKLMVKH 274
           +W+ N+    L  +D+  C+H      G  I +    C   +Y +I VLSPNF +    H
Sbjct: 654 AWVKNELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCH 713

Query: 273 LEIF 262
            E++
Sbjct: 714 YELY 717


>tr|B3Y644|B3Y644_PONPY Toll-like receptor 6 OS=Pongo pygmaeus
           GN=TLR6 PE=2 SV=1
          Length = 796

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
 Frame = -2

Query: 429 SWISNQSCTILSLDDLDTCIHL-----GPKIYQL---CT*DTYIAIHVLSPNFTKLMVKH 274
           +W+ N+    L  +D+  C+H      G  I +    C   +Y +I VLSPNF +    H
Sbjct: 654 AWVKNELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCH 713

Query: 273 LEIF 262
            E++
Sbjct: 714 YELY 717