NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919638
Clone id YMU001_000127_D10
Library
Length 356
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTTTTTTAATCCAACAAAACAAGACTGCTTGCAGAGTACCATCAGG
AGGTTGCCACGGAAACGAGCAGGGCTACCACCCCAAAGGAAACCCCCTCAAGATGATCCA
ATACATCAAAACGATTACAACAGACCAAAAGTGGGCTTAATCAAAGCAATAAAACAGAGA
CCTAGCAGTAACCACCGCATAAGGGGGAGGCATTATTCTCCACCACCTCGCTAGGATAGC
GAGACCACATACCACATAGCACCATGGGACAACAGATACCAAACAACACCGTGCTAAAGA
TGGGCTATTGCGGTGAGCCTCCCACCTTCAAACCAAGAGGTATAGGTGCCCATGGA
■■Homology search results ■■ -
sp_hit_id P54739
Definition sp|P54739|PKAA_STRCO Serine/threonine-protein kinase pkaA OS=Streptomyces coelicolor
Align length 63
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919638|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_D10.
         (335 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54739|PKAA_STRCO Serine/threonine-protein kinase pkaA OS=Str...    33   0.34 
sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropic...    32   0.76 
sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laev...    32   0.76 
sp|Q81258|POLG_HCVNZ Genome polyprotein OS=Hepatitis C virus gen...    32   1.3  
sp|Q81495|POLG_HCVK3 Genome polyprotein OS=Hepatitis C virus gen...    32   1.3  
sp|P20398|PALM3_XENLA Paralemmin-3 OS=Xenopus laevis GN=palm3 PE...    31   1.7  
sp|P30599|CHS2_USTMA Chitin synthase 2 OS=Ustilago maydis GN=CHS...    31   1.7  
sp|Q645U1|T2R16_PONPY Taste receptor type 2 member 16 OS=Pongo p...    30   2.9  
sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabid...    30   2.9  
sp|Q646B3|T2R16_PANTR Taste receptor type 2 member 16 OS=Pan tro...    30   3.8  
sp|Q646D1|T2R16_PANPA Taste receptor type 2 member 16 OS=Pan pan...    30   3.8  
sp|Q9NYV7|T2R16_HUMAN Taste receptor type 2 member 16 OS=Homo sa...    30   3.8  
sp|Q645Y4|T2R16_GORGO Taste receptor type 2 member 16 OS=Gorilla...    30   3.8  
sp|Q5T6R2|YM016_HUMAN C2 tensin-type domain-containing protein E...    30   4.9  
sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo ...    30   4.9  
sp|Q3UG20|MLL5_MOUSE Histone-lysine N-methyltransferase MLL5 OS=...    30   4.9  
sp|Q646E7|T2R16_PAPHA Taste receptor type 2 member 16 OS=Papio h...    29   6.4  
sp|Q811P8|RICS_MOUSE Rho/Cdc42/Rac GTPase-activating protein RIC...    29   6.4  
sp|Q5F464|LPP_CHICK Lipoma-preferred partner homolog OS=Gallus g...    29   6.4  
sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type recepto...    29   6.4  
sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus mu...    29   8.4  

>sp|P54739|PKAA_STRCO Serine/threonine-protein kinase pkaA
           OS=Streptomyces coelicolor GN=pkaA PE=3 SV=1
          Length = 543

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 25  QSTIRRLPRKRAGLPPQ--RKPPQDDPIHQNDYNRPKVGLIKAIKQRPSSNHRIRGRHYS 198
           Q  +RR P+++   PPQ  R+ PQ  P  Q  Y  P+    +   QR ++    + + Y+
Sbjct: 398 QDPLRRRPQRQVSRPPQQPRQAPQGPPPQQPGYGYPQ----QQQPQRYATPQPQQPQRYA 453

Query: 199 PPP 207
           PPP
Sbjct: 454 PPP 456


>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus
           tropicalis GN=tmem56 PE=2 SV=1
          Length = 259

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 237 YVVCGLAILARWWRIMPPPYAVVTARSLFYCF 142
           Y+V  L +LAR+W++M  PY V    ++FY +
Sbjct: 98  YLVHDLLLLARFWKVMRDPYMVCHHLAVFYSY 129


>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis
           GN=tmem56-A PE=2 SV=1
          Length = 258

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 237 YVVCGLAILARWWRIMPPPYAVVTARSLFYCF 142
           Y+V  L +LAR+W++M  PY V    ++FY +
Sbjct: 97  YLVQDLLLLARFWKVMRDPYMVCHHLAVFYSY 128


>sp|Q81258|POLG_HCVNZ Genome polyprotein OS=Hepatitis C virus
           genotype 3a (isolate NZL1) PE=1 SV=3
          Length = 3021

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 272 HGVVWYLLSHGAMWYVVSLS*RGGGE*CLPLMRWLLLGLCFIALI 138
           HG+ WYL++  A WYV     RG     +PL+ + L GL  +AL+
Sbjct: 769 HGIGWYLVAFCAAWYV-----RGK---LVPLVTYSLTGLWSLALL 805


>sp|Q81495|POLG_HCVK3 Genome polyprotein OS=Hepatitis C virus
           genotype 3a (isolate k3a) PE=3 SV=3
          Length = 3021

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/45 (40%), Positives = 26/45 (57%)
 Frame = -1

Query: 272 HGVVWYLLSHGAMWYVVSLS*RGGGE*CLPLMRWLLLGLCFIALI 138
           HG+ WYL++  A WYV     RG     +PL+ + L GL  +AL+
Sbjct: 769 HGIGWYLVAFCAAWYV-----RGK---LVPLVTYSLTGLWSLALL 805


>sp|P20398|PALM3_XENLA Paralemmin-3 OS=Xenopus laevis GN=palm3 PE=1
           SV=1
          Length = 591

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 4   PTKQDCLQSTIRRLPRKRAGLPPQRKPPQDDPIHQNDYNRPKVGLIKAIKQRPSSNHRI 180
           PTK+D    T+  +P  R    P+    Q +P  + D    KV L+  I++ P  N  +
Sbjct: 109 PTKEDQDMGTVLPIPAPRGKTVPKEDENQANPELKVDMEHQKVELVDLIQECPVENQTV 167


>sp|P30599|CHS2_USTMA Chitin synthase 2 OS=Ustilago maydis GN=CHS2
           PE=3 SV=2
          Length = 1074

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = +1

Query: 67  PPQRKPPQDDPIHQNDYNRPKVGLIKAIKQRPSSNHRIRGRHYSPPPR*DSETTYHIAPW 246
           P Q  PP      Q+ ++RP     +     P+SNH         P R D   +Y  AP 
Sbjct: 107 PSQALPPSSSSYAQDAFSRPSYSSHRNAPNAPNSNH---------PSRWDPNASYDTAPT 157

Query: 247 DNRYQTTP 270
              Y   P
Sbjct: 158 APLYDPAP 165


>sp|Q645U1|T2R16_PONPY Taste receptor type 2 member 16 OS=Pongo
           pygmaeus GN=TAS2R16 PE=3 SV=1
          Length = 291

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 237 YVVCGLAILARWWRIMPPPYAVVTARSLFYCFD*AHFWSVVIVLMYWIILRGFP 76
           YV+C L I   ++ I+   + + +  ++FYC   + F   + + + W ILR FP
Sbjct: 76  YVLCNLTITWEFFNILT--FWLNSLLTVFYCIKVSSFTHHIFLWVRWRILRWFP 127


>sp|O22132|LBD19_ARATH LOB domain-containing protein 19
           OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1
          Length = 191

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 28  STIRRLPRKRAGLPPQRKPPQDDPIHQNDY 117
           STI+R P +    P Q +PP  DP H N+Y
Sbjct: 118 STIQRFPLQS---PQQMQPPSFDPAHNNEY 144


>sp|Q646B3|T2R16_PANTR Taste receptor type 2 member 16 OS=Pan
           troglodytes GN=TAS2R16 PE=3 SV=1
          Length = 291

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 237 YVVCGLAILARWWRIMPPPYAVVTARSLFYCFD*AHFWSVVIVLMYWIILRGFP 76
           YV+C L I   ++ I+   + + +  ++FYC   + F   + + + W ILR FP
Sbjct: 76  YVLCNLTITWEFFNILT--FWLNSLLTVFYCIKVSSFTHHIFLWLRWRILRLFP 127
tr_hit_id B2VLF2
Definition tr|B2VLF2|B2VLF2_PODAN Predicted CDS Pa_5_5940 OS=Podospora anserina
Align length 48
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919638|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_D10.
         (335 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2VLF2|B2VLF2_PODAN Predicted CDS Pa_5_5940 OS=Podospora anse...    37   0.65 
tr|A6W2X3|A6W2X3_MARMS Sensor protein OS=Marinomonas sp. (strain...    34   4.2  
tr|B4PDE1|B4PDE1_DROYA GE21702 (Fragment) OS=Drosophila yakuba G...    34   4.2  
tr|B3NBJ1|B3NBJ1_DROER GG14511 OS=Drosophila erecta GN=GG14511 P...    34   4.2  
tr|B6X3Q0|B6X3Q0_9ENTR Putative uncharacterized protein OS=Provi...    33   9.4  

>tr|B2VLF2|B2VLF2_PODAN Predicted CDS Pa_5_5940 OS=Podospora
           anserina PE=4 SV=1
          Length = 427

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  PPQRKPPQDDPIHQN-DYNRPKVGLIKAIKQRPSSNHRIRGRHYSPPP 207
           PPQ++PPQ  P  Q   Y RP +  +       +SN  + G H +PPP
Sbjct: 67  PPQQQPPQQQPPQQQPQYGRPNMPTV-------NSNSYVHGNHGAPPP 107


>tr|A6W2X3|A6W2X3_MARMS Sensor protein OS=Marinomonas sp. (strain
           MWYL1) GN=Mmwyl1_4156 PE=4 SV=1
          Length = 633

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = -3

Query: 282 PSLARCCLVSVVPWCYVVCGLAILARWWRIMPPPYAVVTARSLFYCFD*AHFWSVVIVLM 103
           P L R  L   VPW Y+     +L  WW       + +  RS F+ F  A  W++   ++
Sbjct: 88  PMLER--LYQAVPWFYLTSFAVVLQSWWIGAGDAISTLDTRS-FFIFTEAGAWNLAYTVL 144

Query: 102 YWIILRGFPL-GW 67
             I+  G  L GW
Sbjct: 145 VGILAHGVLLFGW 157


>tr|B4PDE1|B4PDE1_DROYA GE21702 (Fragment) OS=Drosophila yakuba
           GN=GE21702 PE=4 SV=1
          Length = 2145

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 70  PQRKPPQDDPIHQNDYNRPKVGLIKAIKQRPSSN 171
           P     +  P+H+  YN P VG++  I++R SSN
Sbjct: 673 PTSSSVEGSPLHRGSYNSPPVGVVSPIRRRNSSN 706


>tr|B3NBJ1|B3NBJ1_DROER GG14511 OS=Drosophila erecta GN=GG14511 PE=4
            SV=1
          Length = 2479

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 70   PQRKPPQDDPIHQNDYNRPKVGLIKAIKQRPSSN 171
            P     +  P+H+  YN P VG++  I++R SSN
Sbjct: 1013 PTSSSVEGSPLHRGSYNSPPVGVVSPIRRRNSSN 1046


>tr|B6X3Q0|B6X3Q0_9ENTR Putative uncharacterized protein
           OS=Providencia rustigianii DSM 4541 GN=PROVRUST_01841
           PE=4 SV=1
          Length = 593

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 285 SPSLARCCLVSVVP-WCYVVCGLAILARWW 199
           SP++ R C    VP WC + CG+ IL  WW
Sbjct: 209 SPAIGRLCWRFAVPSWCILTCGI-ILGSWW 237