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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919646
Clone id YMU001_000127_E06
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_E06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAAGATTGCTTTGCAATTTCCGTAAATAATGAAAAATGAATCAATCAAATAATCGATAA
TTAAAACCAGCTCCAATTGAGCTGTCACTCAACAGTTTCATAATCCAATACAAACGTGGG
CATCCAAGTCTTTTCCCATGCTTTCCTGAGCTACTTTGAGATAGCCTCAGGAGCATAACA
AATACCTAATTTGTGACCTGGCAAAGTAGTGGATAGGGTTAAGAGGGGGGCCTACCAAAA
CACAGACCATACCAGCATTTAGATAAGTGTCCTAAATGCCCTTAGAGGATACTGCAGCCC
CTTCTAATGAGACCTTCGAAACATGCACAAAAGCAGCCTTCTTTAGCCAGATGGTTGCAT
CAACTCTTCTCCTGAAATCAACTCAGATAAGGGCTTGTCGTCCCCTGCACTGAGCCTCGA
AACGAGGTCAAGAGACACGAGTTTGTGGTGCACTCGGAGGTCCGAACCAATATAACTGAC
AATGAGCCCTCCGGCATCTGGATGCGGCCAGCTAC
■■Homology search results ■■ -
sp_hit_id Q60847
Definition sp|Q60847|COCA1_MOUSE Collagen alpha-1(XII) chain OS=Mus musculus
Align length 26
Score (bit) 31.2
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919646|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_E06.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60847|COCA1_MOUSE Collagen alpha-1(XII) chain OS=Mus musculu...    31   2.8  
sp|Q99715|COCA1_HUMAN Collagen alpha-1(XII) chain OS=Homo sapien...    31   2.8  
sp|Q00804|AT2B1_RABIT Plasma membrane calcium-transporting ATPas...    30   4.7  
sp|Q9Z4Z5|ASNO_STRCO L-asparagine oxygenase OS=Streptomyces coel...    30   6.0  

>sp|Q60847|COCA1_MOUSE Collagen alpha-1(XII) chain OS=Mus musculus
           GN=Col12a1 PE=2 SV=3
          Length = 3120

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 11/26 (42%), Positives = 22/26 (84%)
 Frame = -2

Query: 429 DLVSRLSAGDDKPLSELISGEELMQP 352
           +++S++ +G D+ L EL+SGEE+++P
Sbjct: 311 EIISQVCSGVDEQLGELVSGEEVIEP 336


>sp|Q99715|COCA1_HUMAN Collagen alpha-1(XII) chain OS=Homo sapiens
           GN=COL12A1 PE=1 SV=2
          Length = 3063

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 11/26 (42%), Positives = 22/26 (84%)
 Frame = -2

Query: 429 DLVSRLSAGDDKPLSELISGEELMQP 352
           +++S++ +G D+ L EL+SGEE+++P
Sbjct: 311 EIISQVCSGVDEQLGELVSGEEVVEP 336


>sp|Q00804|AT2B1_RABIT Plasma membrane calcium-transporting ATPase 1
            OS=Oryctolagus cuniculus GN=ATP2B1 PE=2 SV=2
          Length = 1249

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 328  QKQPSLARWLHQLFS*NQLR*GLVVPCTEPRNEVKRHEFVVHSEVRTNITDNEP 489
            ++QPS+A   H +   N  R  L     +P +    H F+ H E R  I D+EP
Sbjct: 1135 RRQPSIASQHHDIRVVNAFRSSLYEGLEKPESRSSIHNFMTHPEFR--IEDSEP 1186


>sp|Q9Z4Z5|ASNO_STRCO L-asparagine oxygenase OS=Streptomyces
           coelicolor GN=asnO PE=1 SV=1
          Length = 333

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 182 FVMLLRLSQSSSGKHGKRLGCPRLYWIMKLLSDSSIGA 69
           FVMLL L    +G+ G R  C R   ++ LLSDS++ A
Sbjct: 167 FVMLLCLRADPTGRAGLRTACVRR--VLPLLSDSTVDA 202
tr_hit_id A9S0X6
Definition tr|A9S0X6|A9S0X6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 47.0
E-value 0.0005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919646|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_E06.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S0X6|A9S0X6_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|A7P2A1|A7P2A1_VITVI Chromosome chr19 scaffold_4, whole genome...    40   0.047
tr|A5C4U7|A5C4U7_VITVI Putative uncharacterized protein OS=Vitis...    40   0.047
tr|Q336Q9|Q336Q9_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    39   0.18 
tr|Q0IVJ6|Q0IVJ6_ORYSJ Os10g0567300 protein (Fragment) OS=Oryza ...    39   0.18 
tr|B8BIB6|B8BIB6_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.18 
tr|Q8S7E0|Q8S7E0_ORYSA Putative uncharacterized protein OSJNBa00...    38   0.30 
tr|A3C7F7|A3C7F7_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.30 
tr|Q56XZ1|Q56XZ1_ARATH Putative uncharacterized protein At1g7854...    37   0.40 
tr|Q8DPA9|Q8DPA9_STRR6 Putative uncharacterized protein spr1260 ...    33   5.7  
tr|Q0S683|Q0S683_RHOSR Putative uncharacterized protein OS=Rhodo...    33   5.7  
tr|Q04JU7|Q04JU7_STRP2 Inositol monophosphatase family protein O...    33   5.7  
tr|B2E4T9|B2E4T9_STRPN Inositol monophosphatase family protein O...    33   5.7  
tr|A5M0P9|A5M0P9_STRPN Putative uncharacterized protein OS=Strep...    33   5.7  
tr|B5X561|B5X561_ARATH At1g17040 OS=Arabidopsis thaliana PE=2 SV=1     33   5.7  

>tr|A9S0X6|A9S0X6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122542 PE=4 SV=1
          Length = 688

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAGDDKPLSELISGEELMQP 352
           AG L+VSY+G+D R+HHKL++LD+ S       KPLSE++    L+QP
Sbjct: 616 AGALVVSYVGNDRRIHHKLLTLDVESGARYTLLKPLSEML----LLQP 659


>tr|A7P2A1|A7P2A1_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027938001
           PE=4 SV=1
          Length = 264

 Score = 40.4 bits (93), Expect = 0.047
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLV--SRLSAGDDKPLSELISGE 367
           AG LIV+YIGSD  +HH+++SLD +  S  +  + KPL +++  E
Sbjct: 202 AGSLIVTYIGSDYNLHHRMLSLDNIYSSDETVRNMKPLEDMLLAE 246


>tr|A5C4U7|A5C4U7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007595 PE=4 SV=1
          Length = 747

 Score = 40.4 bits (93), Expect = 0.047
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLV--SRLSAGDDKPLSELISGE 367
           AG LIV+YIGSD  +HH+++SLD +  S  +  + KPL +++  E
Sbjct: 658 AGSLIVTYIGSDYNLHHRMLSLDNIYSSDETVRNMKPLEDMLLAE 702


>tr|Q336Q9|Q336Q9_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os10g41770 PE=4 SV=1
          Length = 576

 Score = 38.5 bits (88), Expect = 0.18
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAGDDKPLSELISGEELMQ 355
           AG L+V+Y+GSD  +HH+L+SLD VS   +G+ + L  L+   EL Q
Sbjct: 520 AGSLVVTYVGSDNSIHHRLLSLD-VSDAKSGNLEDL--LLKEPELSQ 563


>tr|Q0IVJ6|Q0IVJ6_ORYSJ Os10g0567300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os10g0567300 PE=4 SV=1
          Length = 370

 Score = 38.5 bits (88), Expect = 0.18
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAGDDKPLSELISGEELMQ 355
           AG L+V+Y+GSD  +HH+L+SLD VS   +G+ + L  L+   EL Q
Sbjct: 314 AGSLVVTYVGSDNSIHHRLLSLD-VSDAKSGNLEDL--LLKEPELSQ 357


>tr|B8BIB6|B8BIB6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34700 PE=4 SV=1
          Length = 701

 Score = 38.5 bits (88), Expect = 0.18
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAGDDKPLSELISGEELMQ 355
           AG L+V+Y+GSD  +HH+L+SLD VS   +G+ + L  L+   EL Q
Sbjct: 645 AGSLVVTYVGSDNSIHHRLLSLD-VSDAKSGNLEDL--LLKEPELSQ 688


>tr|Q8S7E0|Q8S7E0_ORYSA Putative uncharacterized protein
           OSJNBa0057L21.16 OS=Oryza sativa GN=OSJNBa0057L21.16
           PE=4 SV=1
          Length = 633

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 17/29 (58%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDL-VSRL 412
           AG L+V+Y+GSD  +HH+L+SLD+ V RL
Sbjct: 599 AGSLVVTYVGSDNSIHHRLLSLDVRVDRL 627


>tr|A3C7F7|A3C7F7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_031229 PE=4 SV=1
          Length = 633

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 17/29 (58%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDL-VSRL 412
           AG L+V+Y+GSD  +HH+L+SLD+ V RL
Sbjct: 599 AGSLVVTYVGSDNSIHHRLLSLDVRVDRL 627


>tr|Q56XZ1|Q56XZ1_ARATH Putative uncharacterized protein At1g78540
           OS=Arabidopsis thaliana GN=At1g78540 PE=2 SV=1
          Length = 668

 Score = 37.4 bits (85), Expect = 0.40
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAG--DDKPLSELISGE 367
           AG L+V+Y+G D  +HHK + +D +   S    D KPL +++  E
Sbjct: 611 AGSLVVTYVGHDFALHHKQLKIDNICESSERYMDAKPLQDMLLAE 655


>tr|Q8DPA9|Q8DPA9_STRR6 Putative uncharacterized protein spr1260
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=spr1260 PE=4 SV=1
          Length = 282

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 21/45 (46%), Positives = 27/45 (60%)
 Frame = -2

Query: 495 AGGLIVSYIGSDLRVHHKLVSLDLVSRLSAGDDKPLSELISGEEL 361
           AG  I+ ++  DLRV  K  S DLV+RL    DK + EL+ GE L
Sbjct: 40  AGQYILDHMQEDLRVETKSSSTDLVTRL----DKEVQELLVGEIL 80