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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919657
Clone id YMU001_000127_F06
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_F06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGCATTGAGGTCGACTCGACTCTTTAGCTTGGCACAATGGGCTGCCAAACGGGACCAAT
ATTATGGCGAACTTCTTATTGATTGCACCCTTATGATCGAATCTTGAGCTACCCTTGCCG
GCCAACGCCACCTATGCACTGGCCCTCCTCTTTACCACCTTTCAACTACTCACGGATAGC
AACTTTCCGAACCTGCAGGTGCCGCCCTCTGTAAACGGCAGGTCTACACGCCCTCAGAAG
GCCTCCTGCTCTTCACTCAGGCTTCTTGGTTTTGTACACGGCACCCCTCAGCACCCTTAA
AATCGGCTCTTCCTCCTCTTGTATCGCTCAGTGCTACTCTGTCCTGCTTCCTTCAGTCCC
TGTATGGTAGGCCACGGCCTTCATCTCTTGCCTCCCTAGTTTTGGCCTGCGCACAGCTGG
CTCTCGGCTTCCAGATGGCGCACCCAGAGGCTCTCCACCCCTGTCAGACAGCGTTGCTCC
CTCCTGAGTCCTGCATTTCGGCTTCACACTCCCCAAGGCTAGCGCCCCTTATCTCTCTGA
AGTTGGCGCCACTTTCTCCGTTCTTTCAAGTTT
■■Homology search results ■■ -
sp_hit_id Q00653
Definition sp|Q00653|NFKB2_HUMAN Nuclear factor NF-kappa-B p100 subunit OS=Homo sapiens
Align length 60
Score (bit) 32.3
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919657|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_F06.
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00653|NFKB2_HUMAN Nuclear factor NF-kappa-B p100 subunit OS=...    32   1.7  
sp|Q3UPL0|SC31A_MOUSE Protein transport protein Sec31A OS=Mus mu...    32   2.2  
sp|Q96DN6|MBD6_HUMAN Methyl-CpG-binding domain protein 6 OS=Homo...    32   2.9  
sp|A9MRW8|RNFC_SALAR Electron transport complex protein rnfC OS=...    31   3.9  
sp|Q9WTK5|NFKB2_MOUSE Nuclear factor NF-kappa-B p100 subunit OS=...    30   6.5  

>sp|Q00653|NFKB2_HUMAN Nuclear factor NF-kappa-B p100 subunit
           OS=Homo sapiens GN=NFKB2 PE=1 SV=4
          Length = 900

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 12  STRLFSLAQWAAKRDQYYGELLIDCTLMIES*ATLAGQRHLCT-----GPPLYHLSTTHG 176
           + RLF LAQ +A+        L+D  +  ++ A LAGQRHL T     G    HL+  HG
Sbjct: 447 NARLFGLAQRSARA-------LLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHG 499


>sp|Q3UPL0|SC31A_MOUSE Protein transport protein Sec31A OS=Mus
            musculus GN=Sec31a PE=1 SV=2
          Length = 1230

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +2

Query: 122  PTPPMHWPSSLPPFNYSRIATFRTCRCRPL*TAGLHALR-----RPPALHSGFLVLYTAP 286
            PT P H PS LPP  Y +   ++  +     T G  A R      PPA ++     Y +P
Sbjct: 857  PTAPGHMPSQLPP--YPQPQPYQPAQQYSFGTGGAAAYRPQQPVAPPASNAYPNTPYISP 914

Query: 287  LSTLKIGSSSSCIAQCYSVLLPSVPVW*ATAFISCLPSFGLRTAGSRLPDGAPRGSPPLS 466
            +      +S S   Q Y+    S P        S   SF   ++G+    G P G+PP S
Sbjct: 915  V------ASYSGQPQMYTAQQASSPT------SSSAASFPPPSSGASFQHGGP-GAPPSS 961

Query: 467  DSVA 478
             + A
Sbjct: 962  SAYA 965


>sp|Q96DN6|MBD6_HUMAN Methyl-CpG-binding domain protein 6 OS=Homo
           sapiens GN=MBD6 PE=2 SV=2
          Length = 1003

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 27/62 (43%), Positives = 29/62 (46%)
 Frame = +3

Query: 366 GRPRPSSLASLVLACAQLALGFQMAHPEALHPCQTALLPPESCISASHSPRLAPLISLKL 545
           G P P S AS  LAC   +L      PEA  PC    LPPES  SA       P +S  L
Sbjct: 782 GAPPPLSEASSPLACLLQSLQIPPEQPEA--PC----LPPESPASALEPEPARPPLS-AL 834

Query: 546 AP 551
           AP
Sbjct: 835 AP 836


>sp|A9MRW8|RNFC_SALAR Electron transport complex protein rnfC
           OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
           / RSK2980) GN=rnfC PE=3 SV=1
          Length = 673

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 561 TEKVAPTSER*GALALGSVKPKCRTQEGATLSDRGGEPLGAPSGSREPAVRRPKLGRQEM 382
           +E   P   R  A+     + K R QE   +S+   EP+     + E A+ R K  +QE 
Sbjct: 577 SEAAEPVDPRKAAVEAAIARAKARKQEQQAVSE-AAEPVDPRKAAVEAAIARAKARKQEQ 635

Query: 381 KAVA 370
           +AV+
Sbjct: 636 QAVS 639


>sp|Q9WTK5|NFKB2_MOUSE Nuclear factor NF-kappa-B p100 subunit OS=Mus
           musculus GN=Nfkb2 PE=1 SV=1
          Length = 899

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 12  STRLFSLAQWAAKRDQYYGELLIDCTLMIES*ATLAGQRHLC-----TGPPLYHLSTTHG 176
           + RLF LAQ +A+        L+D  +  ++ A LAGQRHL       G    HL+  HG
Sbjct: 447 NARLFGLAQRSARA-------LLDYGVTADARALLAGQRHLLMAQDENGDTPLHLAIIHG 499
tr_hit_id A5KAP2
Definition tr|A5KAP2|A5KAP2_PLAVI Putative uncharacterized protein OS=Plasmodium vivax
Align length 108
Score (bit) 37.4
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919657|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_F06.
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5KAP2|A5KAP2_PLAVI Putative uncharacterized protein OS=Plasm...    37   0.60 
tr|Q4T6U1|Q4T6U1_TETNG Chromosome 21 SCAF8611, whole genome shot...    36   1.3  
tr|B1ZCQ6|B1ZCQ6_METPB Amidohydrolase OS=Methylobacterium populi...    34   6.6  
tr|B7KWW0|B7KWW0_METCH Amidohydrolase OS=Methylobacterium chloro...    34   6.6  
tr|A5G9E8|A5G9E8_GEOUR General secretory system II, protein E do...    33   8.6  
tr|Q14395|Q14395_HUMAN Mucin (Fragment) OS=Homo sapiens PE=2 SV=1      33   8.6  

>tr|A5KAP2|A5KAP2_PLAVI Putative uncharacterized protein OS=Plasmodium
            vivax GN=PVX_000975 PE=4 SV=1
          Length = 2628

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 31/108 (28%), Positives = 47/108 (43%)
 Frame = -3

Query: 565  KNGESGANFREIRGASLGECEAEMQDSGGSNAV*QGWRASGCAIWKPRASCAQAKTREAR 386
            KNGESG+N R +R    G  +++    GGS +       SG    K +   + + +R  R
Sbjct: 1300 KNGESGSNSRRVRILGEGSPDSDNDSDGGSGS------GSGDDQKKEKNGESGSNSRRVR 1353

Query: 385  DEGRGLPYRD*RKQDRVALSDTRGGRADFKGAEGCRVQNQEA*VKSRR 242
              G G P  D         +D+ GG     G +  + +N E+   SRR
Sbjct: 1354 ILGEGSPDSD---------NDSDGGSGSGSGDDQKKEKNGESGSNSRR 1392



 Score = 37.0 bits (84), Expect = 0.78
 Identities = 31/108 (28%), Positives = 46/108 (42%)
 Frame = -3

Query: 565  KNGESGANFREIRGASLGECEAEMQDSGGSNAV*QGWRASGCAIWKPRASCAQAKTREAR 386
            KNGESG+N R +R    G  + +    GGS +       SG    K +   + + +R  R
Sbjct: 1259 KNGESGSNSRRVRILGEGSPDGDNDSDGGSGS------GSGDDQKKEKNGESGSNSRRVR 1312

Query: 385  DEGRGLPYRD*RKQDRVALSDTRGGRADFKGAEGCRVQNQEA*VKSRR 242
              G G P  D         +D+ GG     G +  + +N E+   SRR
Sbjct: 1313 ILGEGSPDSD---------NDSDGGSGSGSGDDQKKEKNGESGSNSRR 1351



 Score = 36.6 bits (83), Expect = 1.0
 Identities = 31/108 (28%), Positives = 46/108 (42%)
 Frame = -3

Query: 565  KNGESGANFREIRGASLGECEAEMQDSGGSNAV*QGWRASGCAIWKPRASCAQAKTREAR 386
            KNGESG+N R +R    G  + +    GGS +       SG    K +   + + +R  R
Sbjct: 1177 KNGESGSNSRRVRILGEGSPDGDNDSDGGSGS------GSGDDQKKEKNGESGSNSRRVR 1230

Query: 385  DEGRGLPYRD*RKQDRVALSDTRGGRADFKGAEGCRVQNQEA*VKSRR 242
              G G P  D         +D+ GG     G +  + +N E+   SRR
Sbjct: 1231 ILGEGSPDGD---------NDSDGGSGSGSGDDQKKEKNGESGSNSRR 1269



 Score = 34.3 bits (77), Expect = 5.0
 Identities = 31/108 (28%), Positives = 47/108 (43%)
 Frame = -3

Query: 565  KNGESGANFREIRGASLGECEAEMQDSGGSNAV*QGWRASGCAIWKPRASCAQAKTREAR 386
            KNGESG+N R +R  +L E +    D+   +    G   SG    K +   + + +R  R
Sbjct: 1132 KNGESGSNSRRVR--TLAEKDTPPDDTDYDSDGGSGGSGSGDDQKKEKNGESGSNSRRVR 1189

Query: 385  DEGRGLPYRD*RKQDRVALSDTRGGRADFKGAEGCRVQNQEA*VKSRR 242
              G G P  D         +D+ GG     G +  + +N E+   SRR
Sbjct: 1190 ILGEGSPDGD---------NDSDGGSGSGSGDDQKKEKNGESGSNSRR 1228


>tr|Q4T6U1|Q4T6U1_TETNG Chromosome 21 SCAF8611, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00006125001
           PE=4 SV=1
          Length = 663

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 22/54 (40%), Positives = 27/54 (50%)
 Frame = -1

Query: 492 RTQEGATLSDRGGEPLGAPSGSREPAVRRPKLGRQEMKAVAYHTGTEGSRTE*H 331
           R + GA L+  GGEP GA  G+ EPA R    GR+   A     G  G+R   H
Sbjct: 447 RRRAGARLAGGGGEPAGA--GAAEPAARGAARGRRRAAAAGRDAGGGGARPGAH 498


>tr|B1ZCQ6|B1ZCQ6_METPB Amidohydrolase OS=Methylobacterium populi
           (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=Mpop_1247
           PE=4 SV=1
          Length = 464

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
 Frame = +3

Query: 360 LYGRPRPSSLASLVLACAQLALGFQMAHPEALHPCQTALLPPESCIS------------- 500
           LY RP   +L S + A   + L F  A            LPP+SC+              
Sbjct: 126 LYIRPNDVTLDSTIAAAQGIGLRFHAARGAMSRGQSQGGLPPDSCVEREADILKDAERLI 185

Query: 501 -ASHSPRLAPLISLKLAPLSPF 563
            A H P    +  + LAP SPF
Sbjct: 186 HAHHDPARHAMTRIVLAPCSPF 207


>tr|B7KWW0|B7KWW0_METCH Amidohydrolase OS=Methylobacterium
           chloromethanicum CM4 GN=Mchl_2080 PE=4 SV=1
          Length = 464

 Score = 33.9 bits (76), Expect = 6.6
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
 Frame = +3

Query: 360 LYGRPRPSSLASLVLACAQLALGFQMAHPEALHPCQTALLPPESCIS------------- 500
           LY RP   +L S + A   + L F  A            LPP+SC+              
Sbjct: 126 LYIRPNDVTLDSTIAAARGIGLRFHAARGAMSRGQSQGGLPPDSCVEREADILKDAERLI 185

Query: 501 -ASHSPRLAPLISLKLAPLSPF 563
            A H P    +  + LAP SPF
Sbjct: 186 HAHHDPARHAMTRIVLAPCSPF 207


>tr|A5G9E8|A5G9E8_GEOUR General secretory system II, protein E
           domain protein OS=Geobacter uraniireducens (strain Rf4)
           GN=Gura_4273 PE=4 SV=1
          Length = 552

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 116 KGSSRFDHKGAINKKFAIILVPFGSPLCQAKESSR 12
           KG    DH G   +K+ + L+PF SP+ +A E++R
Sbjct: 477 KGCQACDHTGYAGRKYLMGLIPFDSPMLEAFEAAR 511


>tr|Q14395|Q14395_HUMAN Mucin (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 505

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = +2

Query: 308 SSSSCIAQCYSVLLPSVPVW*ATAFISCLPSFGLRTAGSRLPDGAPRGSPPLSDSVAPS* 487
           S+SS     ++V+ P+      +A I   P+  +    +R+P G+ R  PP++ ++  + 
Sbjct: 339 STSSVTPSTHTVITPTHAQMSTSASIHSTPTGTVPPLTTRMPTGSTRTGPPMTGTIIQTS 398

Query: 488 VLHFGFTLPKASAPYLSEVGAT 553
             H  F+  K S    S   +T
Sbjct: 399 KAHNSFSTAKTSTSLHSHASST 420