BP919661
Clone id YMU001_000127_F10
Library
Length 370
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGTTTCAGAGGGCATGGCCAGCAACAATAACATTCTCTTCTGATGGCATGGTAGAGAAAC
ACCACAAGGTGAGACATTGAGCAAGGATTCATCCCGGAATTCAGAAAGAAATTGCTATTA
CATTCCACCATTCTTCACCTGCATTGCTTGAACTTTATCTCTGCGCACTCATTTGTTCTC
CACTTTCAGCTTCCCCCTCCCTAACAACAGGATGATCATTAACCAATTCCACCAACATAT
TATCCCCAATTCCAATGCTTCCAGACTGCAGTAGCATTGCACTGCTATTACATGCACATG
GAAAGTCCTTGAAAAGGCAGACATAGTGACAAGGGTAGTGAGCATCCCTCTTCTCTTCCT
CTTGCATTTG
■■Homology search results ■■ -
sp_hit_id A0KRY8
Definition sp|A0KRY8|DTD_SHESA D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella sp. (strain ANA-3)
Align length 37
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919661|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_F10.
(370 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A0KRY8|DTD_SHESA D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella ... 30 2.9
sp|Q0BQS8|PQQE_GRABC Coenzyme PQQ synthesis protein E OS=Granuli... 29 6.4
sp|Q0HQC0|DTD_SHESR D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella ... 29 6.4
sp|Q0HNG8|DTD_SHESM D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella ... 29 6.4

>sp|A0KRY8|DTD_SHESA D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella sp.
(strain ANA-3) GN=dtd PE=3 SV=1
Length = 145

Score = 30.4 bits (67), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1

Query: 316 LFKDFPCACNSSAMLLQSGSIGIGDNMLVELVNDHPV 206
L++DF C + + ++G G +M VEL+ND PV
Sbjct: 105 LYEDFVAFCRAQGVTTETGQFGA--DMKVELINDGPV 139


>sp|Q0BQS8|PQQE_GRABC Coenzyme PQQ synthesis protein E
OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1) GN=pqqE PE=3 SV=1
Length = 374

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2

Query: 81 LNVSPCGVSLPCHQKRMLLLLAMPS 7
+N+SP G +LPCH L L PS
Sbjct: 247 INISPSGKALPCHAAETLTGLEFPS 271


>sp|Q0HQC0|DTD_SHESR D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella sp.
(strain MR-7) GN=dtd PE=3 SV=1
Length = 145

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1

Query: 316 LFKDFPCACNSSAMLLQSGSIGIGDNMLVELVNDHPV 206
L+++F C + + ++G G +M VELVND PV
Sbjct: 105 LYEEFVAFCRAQGVTTETGQFGA--DMKVELVNDGPV 139


>sp|Q0HNG8|DTD_SHESM D-tyrosyl-tRNA(Tyr) deacylase OS=Shewanella sp.
(strain MR-4) GN=dtd PE=3 SV=1
Length = 145

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1

Query: 316 LFKDFPCACNSSAMLLQSGSIGIGDNMLVELVNDHPV 206
L+++F C + + ++G G +M VELVND PV
Sbjct: 105 LYEEFVAFCRAQGVTTETGQFGA--DMKVELVNDGPV 139


tr_hit_id A9SDH1
Definition tr|A9SDH1|A9SDH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919661|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_F10.
(370 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SDH1|A9SDH1_PHYPA Predicted protein OS=Physcomitrella paten... 35 1.4
tr|Q9XMG4|Q9XMG4_9CEST NADH-ubiquinone oxidoreductase chain 1 (F... 34 3.2
tr|A4PBD6|A4PBD6_9CEST NADH-ubiquinone oxidoreductase chain 1 OS... 34 3.2
tr|A9RRL6|A9RRL6_PHYPA Predicted protein OS=Physcomitrella paten... 34 3.2
tr|Q470N6|Q470N6_RALEJ Coenzyme PQQ biosynthesis protein E OS=Ra... 33 5.4
tr|Q9XMF6|Q9XMF6_9CEST NADH-ubiquinone oxidoreductase chain 1 (F... 33 7.1
tr|Q953M5|Q953M5_9CEST NADH-ubiquinone oxidoreductase chain 1 OS... 33 7.1
tr|Q8HIK8|Q8HIK8_9CEST NADH-ubiquinone oxidoreductase chain 1 (F... 33 7.1
tr|B6ECH1|B6ECH1_9CEST NADH dehydrogenase subunit 1 (Fragment) O... 33 7.1
tr|A1YYV4|A1YYV4_9CEST NADH-ubiquinone oxidoreductase chain 1 (F... 33 7.1

>tr|A9SDH1|A9SDH1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_164333 PE=3 SV=1
Length = 348

Score = 35.4 bits (80), Expect = 1.4
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1

Query: 289 NSSAMLLQSGSIGIGDNMLVELVNDH-PVVREGEAESGEQMSAQR*SSSNAGEEWWNVIA 113
N S L S G+ DN LV++VND+ VVR+ ++E + M A +S+ + W++ I
Sbjct: 42 NGSTSTLPDSS-GLSDNTLVDMVNDYSTVVRKLDSEDVDDMEADAIASTGSLSTWFDCIK 100

Query: 112 ISF 104
F
Sbjct: 101 DDF 103


>tr|Q9XMG4|Q9XMG4_9CEST NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Echinococcus vogeli GN=ND1 PE=3 SV=1
Length = 157

Score = 34.3 bits (77), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWWNWL+ L+ G
Sbjct: 107 VVIFCALCCCSYNLVDFYNSCWWNWLLFPLIYG 139


>tr|A4PBD6|A4PBD6_9CEST NADH-ubiquinone oxidoreductase chain 1
OS=Echinococcus vogeli GN=nad1 PE=3 SV=1
Length = 297

Score = 34.3 bits (77), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWWNWL+ L+ G
Sbjct: 152 VVIFCALCCCSYNLVDFYNSCWWNWLLFPLIYG 184


>tr|A9RRL6|A9RRL6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_69684 PE=4 SV=1
Length = 695

Score = 34.3 bits (77), Expect = 3.2
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3

Query: 170 ECAEIKFKQCR*RMVECNSNFFLNSGMNPCSMSHLVVFLYHAIRRECY 27
+C E++ + CNS+F + SG ++H +++L + ++R+CY
Sbjct: 577 QCMEVRMRVQTHFSFRCNSSFKIQSGDFSSKIAHRMLYLMYTMQRQCY 624


>tr|Q470N6|Q470N6_RALEJ Coenzyme PQQ biosynthesis protein E
OS=Ralstonia eutropha (strain JMP134) GN=Reut_A1782 PE=4
SV=1
Length = 389

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2

Query: 87 SLLNVSPCGVSLPCHQKRMLLLLAMPSET 1
+ L V+P G +LPCH RML LA+P+ T
Sbjct: 257 TFLGVAPDGTALPCHAARMLPGLALPNVT 285


>tr|Q9XMF6|Q9XMF6_9CEST NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Echinococcus equinus GN=ND1 PE=3 SV=1
Length = 157

Score = 33.1 bits (74), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWW+WL+ L+ G
Sbjct: 107 VVIFCALCCCSYNLVDFYYSCWWSWLLFPLIYG 139


>tr|Q953M5|Q953M5_9CEST NADH-ubiquinone oxidoreductase chain 1
OS=Echinococcus equinus GN=ND1 PE=3 SV=1
Length = 297

Score = 33.1 bits (74), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWW+WL+ L+ G
Sbjct: 152 VVIFCALCCCSYNLVDFYYSCWWSWLLFPLIYG 184


>tr|Q8HIK8|Q8HIK8_9CEST NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Echinococcus equinus GN=nadh-1 PE=3 SV=1
Length = 147

Score = 33.1 bits (74), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWW+WL+ L+ G
Sbjct: 105 VVIFCALCCCSYNLVDFYYSCWWSWLLFPLIYG 137


>tr|B6ECH1|B6ECH1_9CEST NADH dehydrogenase subunit 1 (Fragment)
OS=Echinococcus equinus GN=ND1 PE=4 SV=1
Length = 162

Score = 33.1 bits (74), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWW+WL+ L+ G
Sbjct: 110 VVIFCALCCCSYNLVDFYYSCWWSWLLFPLIYG 142


>tr|A1YYV4|A1YYV4_9CEST NADH-ubiquinone oxidoreductase chain 1
(Fragment) OS=Echinococcus equinus PE=3 SV=1
Length = 130

Score = 33.1 bits (74), Expect = 7.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2

Query: 297 VHVIAVQCYCSLEALELGIICWWNWLMIILLLG 199
V + C CS ++ CWW+WL+ L+ G
Sbjct: 80 VVIFCALCCCSYNLVDFYYSCWWSWLLFPLIYG 112