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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919664
Clone id YMU001_000127_G01
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTGCACAAAACCACTCCATTCGAATAACATTGGAAAATGTGTTATGCAACTT
CCCAAATCATGAACAATTTGCATGAGACTACTGAATGAGCTTTTCCAGTATAATCACATC
AACCTACTTTCATAAGCTTCCACTGTGCGAAGTCCTCCAACATAATGATCAACAAACAGG
CTTTCTTTCGAGCTTGAAAGCATCCCTATGCACTTGAGCTATTGAAGCCACCTCATAAGC
TTTCTCTTAACTGAAAAATGCTGTAAAATGACCACTAAACCACTTCAGCTCCAAAGTTCA
ATCCCAATTCTTTCGCAATGTATCTCTCAACACTTCCATAAAGGCGCACAGTTTTCTACA
CCTTCAAACTTTGAAAAAGTTCAGCTTAGGGCATCACCACCGCGTACGTAACCTAGTGGT
TAAAGTGAATGTGTGGGTGCGCAAAGACCCAGGTTCAATCCCCAGCAACATCATTCAAAT
TTCAGTTGTACCTCAAAAGAAAAAAGGTTGAGCGTTTAACAACAAACCATTTGCAACTGC
CCTGACGTATCAAGTTTGCCTGATGCCAAACTATCTGT
■■Homology search results ■■ -
sp_hit_id Q60520
Definition sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus
Align length 81
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919664|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G01.
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=...    32   2.9  
sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=...    32   2.9  

>sp|Q60520|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus
           musculus GN=Sin3a PE=1 SV=2
          Length = 1282

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
 Frame = -1

Query: 238 KRKLMRWLQ*LKCIGMLSSSK-----ESLFVDHYVGGLRTVEAYESRLM*L-YWKSSFSS 77
           K KLM     LK   M  +SK     ESLF D     LR+ EAYE+ L  L  +     S
Sbjct: 442 KPKLMS----LKESSMADASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVIS 497

Query: 76  LMQIVHDLGSCITHFPMLFEW 14
             ++V  +   +  FP LF W
Sbjct: 498 RAELVQLVSPFLGKFPELFNW 518


>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a
           OS=Homo sapiens GN=SIN3A PE=1 SV=2
          Length = 1273

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -1

Query: 208 LKCIGMLSSSK-----ESLFVDHYVGGLRTVEAYESRLM*L-YWKSSFSSLMQIVHDLGS 47
           LK   M  +SK     ESLF D     LR+ EAYE+ L  L  +     S  ++V  +  
Sbjct: 447 LKDSSMADASKHGGGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSP 506

Query: 46  CITHFPMLFEW 14
            +  FP LF W
Sbjct: 507 FLGKFPELFNW 517
tr_hit_id Q0Q5W9
Definition tr|Q0Q5W9|Q0Q5W9_9INFA Hemagglutinin OS=Influenza A virus (A/cinnamon teal/Bolivia/4537/2001(H7N3))
Align length 51
Score (bit) 36.6
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919664|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G01.
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0Q5W9|Q0Q5W9_9INFA Hemagglutinin OS=Influenza A virus (A/cin...    37   0.98 
tr|Q6W924|Q6W924_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  
tr|Q6W923|Q6W923_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  
tr|Q6W922|Q6W922_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  
tr|Q6W921|Q6W921_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  
tr|Q6W920|Q6W920_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  
tr|Q6W919|Q6W919_9INFA Hemagglutinin OS=Influenza A virus (A/tur...    35   3.7  
tr|Q0A2Q3|Q0A2Q3_9INFA Hemagglutinin OS=Influenza A virus (A/chi...    35   3.7  

>tr|Q0Q5W9|Q0Q5W9_9INFA Hemagglutinin OS=Influenza A virus
           (A/cinnamon teal/Bolivia/4537/2001(H7N3)) GN=HA PE=3
           SV=1
          Length = 560

 Score = 36.6 bits (83), Expect = 0.98
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++PI S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPIDSNCVGNCFHSGGTITSPLPFQNINPR 309


>tr|Q6W924|Q6W924_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/176822/02(H7N3)) PE=3 SV=1
          Length = 560

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q6W923|Q6W923_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/4322/02(H7N3)) PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q6W922|Q6W922_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/4957/02(H7N3)) PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q6W921|Q6W921_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/4968/02(H7N3)) PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q6W920|Q6W920_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/4977/02(H7N3)) PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q6W919|Q6W919_9INFA Hemagglutinin OS=Influenza A virus
           (A/turkey/Chile/4418/02(H7N3)) PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309


>tr|Q0A2Q3|Q0A2Q3_9INFA Hemagglutinin OS=Influenza A virus
           (A/chicken/Chile/184240-4322/2002(H7N3)) GN=HA PE=3 SV=1
          Length = 570

 Score = 34.7 bits (78), Expect = 3.7
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 228 SFLLTEKCCKMTTKPLQLQSSIPILSQCISQHFHKGAQFSTPSNFEKVQLR 380
           +F+  ++   +  K L +QS++P  S C+   FH G   ++P  F+ +  R
Sbjct: 259 AFIAPDRATFLKGKSLGVQSNVPTDSNCVGDCFHSGGTITSPLPFQNINPR 309