BP919670
Clone id YMU001_000127_G07
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAGCCTTGTTTTGACATTACTCCCCCCTTAAGGAAGAGTTTTCGTCCTTGAAAACACAAG
TAGTAATATCTTCTTAAGAACACTGATGTTTTCTTTATTGACGTCCCATACGTGGGCCAA
TTGTCTGTATGATCGATAATTGGTGCAGTGAGGAGGTTCAATGAAACCAAGAGCAACATC
TTGATTTTCAACATTGTTGTCCTTTTGCAACCACTTGTATCGAATTGGTAACTCAATTTG
TAACTCACTTTAAGTACTTTAAAGGAGTTACCACTACTAAAAGATGTCGAAAGACATATC
CAGTTTTTAGACTTTTGAAAGAGACCGGAAAAATGCAAGAAAACCTTGGCGCAACTATCT
GTGAAGTTGTGAGCCAGATTTACAACTTGCGTGAGTATCTTGAAAAGCTCATAGCTATTG
AAGGACATAATAGGGAATGTCCTCAGGTCAGACTTCTGAACATTTTGGAACACACAGAAG
TA
■■Homology search results ■■ -
sp_hit_id A4QJT6
Definition sp|A4QJT6|NDHJ_OLIPU NAD(P)H-quinone oxidoreductase subunit J, chloroplastic OS=Olimarabidopsis pumila
Align length 52
Score (bit) 32.7
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919670|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G07.
(482 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A4QJT6|NDHJ_OLIPU NAD(P)H-quinone oxidoreductase subunit J, c... 33 0.89
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 OS=A... 32 1.5
sp|A4QK21|NDHJ_ARAHI NAD(P)H-quinone oxidoreductase subunit J, c... 31 2.6
sp|A2BYV8|CAPP_PROM5 Phosphoenolpyruvate carboxylase OS=Prochlor... 31 2.6
sp|A4QJK2|NDHJ_AETGR NAD(P)H-quinone oxidoreductase subunit J, c... 30 4.4
sp|A4QLT6|NDHJ_NASOF NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|A4QLJ7|NDHJ_LOBMA NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|A4QLA9|NDHJ_LEPVR NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|A4QKT4|NDHJ_CRUWA NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|A4QKA8|NDHJ_BARVE NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|P56754|NDHJ_ARATH NAD(P)H-quinone oxidoreductase subunit J, c... 30 5.7
sp|P44243|Y1523_HAEIN Uncharacterized protein HI1523 OS=Haemophi... 30 7.5
sp|A4QKJ5|NDHJ_CAPBU NAD(P)H-quinone oxidoreductase subunit J, c... 29 9.8

>sp|A4QJT6|NDHJ_OLIPU NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Olimarabidopsis pumila GN=ndhJ PE=3
SV=1
Length = 158

Score = 32.7 bits (73), Expect = 0.89
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ H + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVHQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 OS=Apis
mellifera ligustica GN=ND2 PE=3 SV=1
Length = 333

Score = 32.0 bits (71), Expect = 1.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1

Query: 482 YFCVFQNVQKSDLRTFPIMSFNSYELFKILTQVVNLAHN--FTDSCAKVFLHFSGLFQKS 309
YF + + K +++ F M +N Y+++ LT + N + F K L F + K+
Sbjct: 205 YFLLISFLNKFNIQNFNFMFYNKYQMYTFLTLMFNYSMYPIFLSFVIKWNLIFMMVSVKA 264

Query: 308 KNWICLSTSFSS 273
NWI SS
Sbjct: 265 YNWILFLLMISS 276


>sp|A4QK21|NDHJ_ARAHI NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Arabis hirsuta GN=ndhJ PE=3 SV=1
Length = 158

Score = 31.2 bits (69), Expect = 2.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF+H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFMHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A2BYV8|CAPP_PROM5 Phosphoenolpyruvate carboxylase
OS=Prochlorococcus marinus (strain MIT 9515) GN=ppc PE=3
SV=1
Length = 989

Score = 31.2 bits (69), Expect = 2.6
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +3

Query: 267 VTTTKRCRKTYPVFRLLKETGKMQENLGATICE--VVSQIYNLREYLEKLI 413
V+ TK +T+ VF+++K ++QE G+ IC V+S ++ + LE L+
Sbjct: 512 VSWTKSTEETFSVFKMVK---RLQEEFGSRICHSYVISMSHSASDLLEVLL 559


>sp|A4QJK2|NDHJ_AETGR NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Aethionema grandiflora GN=ndhJ PE=3
SV=1
Length = 158

Score = 30.4 bits (67), Expect = 4.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNSRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A4QLT6|NDHJ_NASOF NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Nasturtium officinale GN=ndhJ PE=3 SV=1
Length = 158

Score = 30.0 bits (66), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A4QLJ7|NDHJ_LOBMA NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Lobularia maritima GN=ndhJ PE=3 SV=1
Length = 158

Score = 30.0 bits (66), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A4QLA9|NDHJ_LEPVR NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Lepidium virginicum GN=ndhJ PE=3 SV=1
Length = 158

Score = 30.0 bits (66), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A4QKT4|NDHJ_CRUWA NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Crucihimalaya wallichii GN=ndhJ PE=3
SV=1
Length = 158

Score = 30.0 bits (66), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


>sp|A4QKA8|NDHJ_BARVE NAD(P)H-quinone oxidoreductase subunit J,
chloroplastic OS=Barbarea verna GN=ndhJ PE=3 SV=1
Length = 158

Score = 30.0 bits (66), Expect = 5.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1

Query: 395 LTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWICLSTSFSSGNSFKVLKVSY 240
LT++ + + C KVF H S S W+ ST F S+ +L ++Y
Sbjct: 71 LTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKSTDFQERESYDMLGITY 122


tr_hit_id Q4YCN4
Definition tr|Q4YCN4|Q4YCN4_PLABE Putative uncharacterized protein (Fragment) OS=Plasmodium berghei
Align length 109
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919670|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G07.
(482 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4YCN4|Q4YCN4_PLABE Putative uncharacterized protein (Fragmen... 34 4.1
tr|B4EZK9|B4EZK9_PROMH Putative beta-ketoacyl-ACP synthase OS=Pr... 33 5.4
tr|A5FHQ0|A5FHQ0_FLAJ1 Glycosyl transferase, group 1 OS=Flavobac... 33 7.0
tr|B3NVM5|B3NVM5_DROER GG18063 OS=Drosophila erecta GN=GG18063 P... 33 7.0
tr|A8XUX7|A8XUX7_CAEBR Putative uncharacterized protein OS=Caeno... 33 9.2

>tr|Q4YCN4|Q4YCN4_PLABE Putative uncharacterized protein (Fragment)
OS=Plasmodium berghei GN=PB102688.00.0 PE=4 SV=1
Length = 170

Score = 33.9 bits (76), Expect = 4.1
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = -1

Query: 473 VFQNVQKSDLRTFPIMSFNSYELFKILTQVVNLAHNFTDSCAKVFLHFSGLFQKSKNWIC 294
+ N++K + T I+ E+ K+ ++ + + + VF+ +F+ K +I
Sbjct: 21 LIHNMKKKNYTTINIIELIREEIIKMENSCISSFYPYKINDTNVFILCHNIFKLIKRYIS 80

Query: 293 LSTSFS--SGNSFKVLKVSYKLSYQFDTSGCKRTTMLKIKMLLLVSLNL 153
FS S N+ + +K YK+ F + K+ +++ +M L + LN+
Sbjct: 81 AKNKFSLPSKNNIRHVKYIYKIFLFFLFNMLKQYSIIYNEMKLKIFLNI 129


>tr|B4EZK9|B4EZK9_PROMH Putative beta-ketoacyl-ACP synthase
OS=Proteus mirabilis (strain HI4320) GN=PMI2907 PE=4
SV=1
Length = 405

Score = 33.5 bits (75), Expect = 5.4
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = -1

Query: 482 YFCVFQNVQKSDLRTFPIMSFNSYELFKILTQVVNLAHNFTDSCAKVFLHFSGLFQKSKN 303
Y VF +Q + RT FN Y + K+++Q+++L+H +F+H +G K
Sbjct: 248 YHSVF--MQSNAERTMGGTLFNFYTISKVISQLLDLSHYLPSDIGAIFIHGNGSIISDK- 304

Query: 302 WICLSTSFSSGNSFK--VLKVSYK--LSYQFDTSGCKRTTMLKIKMLLLVSLNLLTAPII 135
+ + + N FK + +SYK + Y + SG I L++++ +L +I
Sbjct: 305 ----AETVAITNIFKQPIPIISYKGQIGYISNCSG--------IIDLMIIADSLKNNRLI 352

Query: 134 DHTDNWP 114
T ++P
Sbjct: 353 PSTTHYP 359


>tr|A5FHQ0|A5FHQ0_FLAJ1 Glycosyl transferase, group 1
OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
2064 / UW101) GN=Fjoh_2243 PE=4 SV=1
Length = 363

Score = 33.1 bits (74), Expect = 7.0
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Frame = -1

Query: 422 FNSYELFKILTQVVNLAHNFTDSCAKVFLHFSGLFQKS------KNWICLST-------S 282
FN Y+ + + NL + + + CA FL+F+ L Q+S KN I +S S
Sbjct: 120 FNEYKESRFFGFINNLKYKYRNYCASQFLYFTALSQESLNEWSVKNGIVISNPLWIETRS 179

Query: 281 FSSGNSFKVLKVS 243
FS S K++ V+
Sbjct: 180 FSDLESKKIIAVA 192


>tr|B3NVM5|B3NVM5_DROER GG18063 OS=Drosophila erecta GN=GG18063 PE=4
SV=1
Length = 412

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -2

Query: 442 GHSLLCPSIAMSFSRYSRKL*I-WLTTSQIVAPRFSCIFPVSFKSLKTGYVFRHLLVVVT 266
G L+ P+ +F+ Y K + W++ +Q + S ++P+ + L T Y FR L+++T
Sbjct: 66 GFGLMVPTCYTTFNHYFVKNRVMWMSFAQTLIGLGSMLYPIVIQKLMTWYGFRGCLLILT 125

Query: 265 PL 260
L
Sbjct: 126 GL 127


>tr|A8XUX7|A8XUX7_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG19147 PE=4 SV=1
Length = 191

Score = 32.7 bits (73), Expect = 9.2
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Frame = +3

Query: 171 EQHLDFQHCCPFATTCIEL-----VTQ-FVTHFKYFKGVTTTKRCRKTYPVFRLLKETGK 332
E+H HC P + +EL VTQ F+ + K +K T +++C +K GK
Sbjct: 40 EEHTKLGHCVPLIDSALELESDMNVTQGFLMNPKEYK--TLSQKCDDA------IKCVGK 91

Query: 333 MQENLGATICEVVSQ----IYNLREY---LEKLIAIEGHNREC 440
++ + A + S ++ RE+ EKLIA + NR C
Sbjct: 92 IESFVSADVLHTFSSCQFYVFYNREFSPCAEKLIAKKEENRSC 134