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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919673
Clone id YMU001_000127_G10
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTCAGCAACGACTCAGCAGGCGACAAAACATCCACTCTGGTAGTTCACCCAAATGACCCA
CCCCATGACATGAGACGAAAAGATGACAACCTTCAGTTGTCAGTTTCATGATTTACCTAT
GAAAGATGTGTGTTGATATACCAATGACACGCTGCAAATTACCTATCACACAATTGCCTA
CCACAAATCAGTTTACCTATCACAGTCAACATCACAAAAAAAAAGAGACAACATCCCTCG
GTATTCAACCAATTATAAATAAATGTGGCCCATAAAATATGGTCGATCACGTCTTTTGCA
GTTACTTCGTTACACTGACTATGCCTGCATGCATGAAGCATAGCAAAACGATGATAAGTG
TGGCTTTGACAAAATCAACCAAAATAGATTAAAAACACTGAATG
■■Homology search results ■■ -
sp_hit_id P89684
Definition sp|P89684|POL2_BAMMN Genome polyprotein 2 OS=Barley mild mosaic virus (strain Na1)
Align length 52
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919673|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G10.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P89684|POL2_BAMMN Genome polyprotein 2 OS=Barley mild mosaic ...    31   2.2  
sp|P26135|HEMA_I74A2 Hemagglutinin OS=Influenza A virus (strain ...    31   2.2  
sp|P26141|HEMA_I84A5 Hemagglutinin OS=Influenza A virus (strain ...    30   3.7  
sp|P12586|HEMA_I82A6 Hemagglutinin (Fragment) OS=Influenza A vir...    30   3.7  
sp|P12582|HEMA_I77A6 Hemagglutinin (Fragment) OS=Influenza A vir...    30   3.7  
sp|P16994|HEMA_I72A0 Hemagglutinin OS=Influenza A virus (strain ...    30   3.7  
sp|P32584|STE14_YEAST Protein-S-isoprenylcysteine O-methyltransf...    30   4.8  
sp|P35678|MTN5_NOSS7 Modification methylase NspV OS=Nostoc sp. (...    30   4.8  
sp|Q08011|HEMA_I89A8 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|Q03909|HEMA_I89A7 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|O11283|HEMA_I89A2 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P16996|HEMA_I87A3 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P17001|HEMA_I86A3 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P19699|HEMA_I86A2 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P12589|HEMA_I86A1 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|P12588|HEMA_I85A2 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|P12587|HEMA_I85A1 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|Q38SQ8|HEMA_I83A8 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P12585|HEMA_I82A5 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|P11134|HEMA_I82A4 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|Q82559|HEMA_I81A2 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P16998|HEMA_I80AB Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P12584|HEMA_I80A7 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|P12583|HEMA_I80A6 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|Q2RCH5|HEMA_I80A4 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P11133|HEMA_I78A9 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  
sp|Q2VND2|HEMA_I78A8 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|Q2VNF2|HEMA_I78A7 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P03440|HEMA_I77A8 Hemagglutinin OS=Influenza A virus (strain ...    30   4.8  
sp|P43259|HEMA_I77A7 Hemagglutinin (Fragment) OS=Influenza A vir...    30   4.8  

>sp|P89684|POL2_BAMMN Genome polyprotein 2 OS=Barley mild mosaic
           virus (strain Na1) GN=RNA2 PE=3 SV=1
          Length = 891

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +2

Query: 140 TNDTLQITYHTIAYHKSVYLSQSTSQKKRDNI---PRYSTNYK*MWPIKYGR 286
           ++DT  IT++   Y   V  + S    KR N     R+  N+K +W  +YGR
Sbjct: 330 SDDTADITHNVHQYVFEVLKTMSVQFSKRTNAYNRARFEVNHKVIWNAEYGR 381


>sp|P26135|HEMA_I74A2 Hemagglutinin OS=Influenza A virus (strain
           A/Duck/Memphis/928/1974 H3N8) GN=HA PE=3 SV=1
          Length = 566

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V   S    W++W+++ + CF+ C V+
Sbjct: 517 QIKGVELKSGYKDWILWISFATSCFLLCVVL 547


>sp|P26141|HEMA_I84A5 Hemagglutinin OS=Influenza A virus (strain
           A/Swine/Ukkel/1/1984 H3N2) GN=HA PE=3 SV=1
          Length = 566

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 138 YQHTSFIGKS*N*--QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Y H  +  ++ N   Q+K V   S    W++W+++   CF+ C V+
Sbjct: 502 YDHNEYRDEALNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVL 547


>sp|P12586|HEMA_I82A6 Hemagglutinin (Fragment) OS=Influenza A virus
           (strain A/Duck/Hokkaido/21/1982 H3N8) GN=HA PE=3 SV=2
          Length = 550

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V   S    W++W+++   CF+ C V+
Sbjct: 501 QIKGVELKSGYKNWILWISFAISCFLLCVVL 531


>sp|P12582|HEMA_I77A6 Hemagglutinin (Fragment) OS=Influenza A virus
           (strain A/Duck/Hokkaido/5/1977 H3N8) GN=HA PE=3 SV=1
          Length = 550

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 138 YQHTSFIGKS*N*--QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Y H  +  +S N   Q+K V   S    W++W+++   CF+ C V+
Sbjct: 486 YDHDVYRDESLNNRFQIKGVELKSGYKDWILWISFAISCFLLCVVL 531


>sp|P16994|HEMA_I72A0 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Algiers/1972 H3N8) GN=HA PE=3 SV=2
          Length = 565

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V   S    W++W+++   CF+ C V+
Sbjct: 516 QIKSVELKSGYKDWILWISFAISCFLICVVL 546


>sp|P32584|STE14_YEAST Protein-S-isoprenylcysteine
           O-methyltransferase OS=Saccharomyces cerevisiae GN=STE14
           PE=1 SV=1
          Length = 239

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 356 YHRFAMLHACRHSQCNEVTAKDVIDHILWATFIYNWLNTEGCCLFFF 216
           Y R   +H   HS  + V  K   DH+L  T +Y+W        FF+
Sbjct: 134 YTRTIAMHTAGHSFSHIVKTKKESDHVLVKTGVYSWSRHPSYLGFFW 180


>sp|P35678|MTN5_NOSS7 Modification methylase NspV OS=Nostoc sp.
           (strain PCC 7524) GN=nspVM PE=4 SV=1
          Length = 440

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +2

Query: 92  FSCQFHDLPMKDVC*YTNDTLQITYHTIAYHKSVYLSQSTSQKKRDNIPRYSTNYK*MWP 271
           F C+F  +     C   ++     Y+ I YH +V +    + K+  N+    +N K    
Sbjct: 221 FLCKFDLISKNYFCDIFDNIETSKYYRIGYHNNVLIKDLVALKRLKNLYTNKSNIKWRSG 280

Query: 272 IKYGRSRLLQLLRYTD 319
           IK+  + +++L +  D
Sbjct: 281 IKHDCASVMELQKIND 296


>sp|Q08011|HEMA_I89A8 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Suffolk/1989 H3N8) GN=HA PE=3 SV=1
          Length = 565

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V   S    W++W+++   CF+ C V+
Sbjct: 516 QIKGVELKSGYKDWILWISFAISCFLICVVL 546


>sp|Q03909|HEMA_I89A7 Hemagglutinin OS=Influenza A virus (strain
           A/Equine/Jillin/1/1989 H3N8) GN=HA PE=3 SV=1
          Length = 571

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V   S    W++W+++   CF+ C V+
Sbjct: 522 QIKGVELKSGYKDWILWISFAISCFLLCVVL 552
tr_hit_id A8BZ05
Definition tr|A8BZ05|A8BZ05_GIALA Putative uncharacterized protein OS=Giardia lamblia ATCC 50803
Align length 50
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919673|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_G10.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8BZ05|A8BZ05_GIALA Putative uncharacterized protein OS=Giard...    35   1.9  
tr|Q6BFZ9|Q6BFZ9_PARTE Putative uncharacterized protein (Chromos...    34   4.2  
tr|Q1W1Z8|Q1W1Z8_9INFA Hemagglutinin OS=Influenza A virus (A/swi...    33   9.4  

>tr|A8BZ05|A8BZ05_GIALA Putative uncharacterized protein OS=Giardia
            lamblia ATCC 50803 GN=GL50803_113219 PE=4 SV=1
          Length = 3191

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 156  CSVSLVYQHTSFIGKS*N*QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
            CS   + +HT  + +S      VVI  +H+ GWV+  NY+ G  V+  ++
Sbjct: 1533 CSPKDILEHTDGVSRS------VVILQAHIRGWVVRRNYRDGVLVSVRII 1576


>tr|Q6BFZ9|Q6BFZ9_PARTE Putative uncharacterized protein (Chromosome
           undetermined scaffold_1, whole genome shotgun sequence)
           OS=Paramecium tetraurelia GN=GSPATT00000296001 PE=4 SV=1
          Length = 463

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
 Frame = +2

Query: 92  FSCQFHDL---PMKDVC*YTNDTLQITYHTIAYHKSVYLSQSTSQKKRDNIPRYSTNYK* 262
           F C FHD     MKD+            +T A+++ +   + T  K++ N   Y TNY  
Sbjct: 62  FQC-FHDRFNQNMKDI------------NTSAFYEPINQEKQTISKRKQNNTIYPTNYSH 108

Query: 263 MWPIKYGRSRLLQLLRYTDYACMHEA*QNDDKCGFDKIN 379
           +   +  RS +    +   Y  +H   QN++K    KIN
Sbjct: 109 LGGTETERSHINIKYQRESYKYLHRNRQNNNKINEQKIN 147


>tr|Q1W1Z8|Q1W1Z8_9INFA Hemagglutinin OS=Influenza A virus
           (A/swine/Taiwan/0408/2004(H3N1)) PE=3 SV=1
          Length = 566

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 99  QLKVVIFSSHVMGWVIWVNYQSGCFVAC*VV 7
           Q+K V+  S    WV+W+++   CF+ C V+
Sbjct: 517 QIKDVVLKSGYKNWVLWISFAISCFLLCVVL 547