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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919683
Clone id YMU001_000127_H08
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAGGATAGCTCTTTGGGTGCACGACTAGAACAGTCACCAATGGTGGTGACAGATTTTGA
GGCTTTGCCAATCAGGAAGCAGAGCAGTGAGTCACATGTACGAGACATTGCAGTCTCATT
GATTTTGCAGACATGTACTTTTGTGGATGAGCTCCAGAATGTTGTGCAAAACATGTCTGT
AGATGTAGAGTTAGAGCGGCCATGCTCTAGCAAGACACATCGGATGAATCCTCTTAGGAT
AGAGATGCCTCCTACCACGGAGATGAGCGATGAGTTCTTTGACATGCTCATGTTAGAAGC
CACTATGGTAATTCCAGGAAATGAGGATATAGTCCCTATGGATGATGAGAGAGTGACGAC
TACCCTAGAGTCATAATCGATGCATCCATATGCAACTAGTTCTAGTGGTGATATAGTGAG
GGTTGAGATCCCGACTGTGGATAGATTGGTAGAGGTCACTGCACATGGCGTTGATGCAAT
TGGCATGGATATGCTGGCAAAGATTACACGTTTGCCATTAGCCTTTGGGACTCTTATGTA
TGACC
■■Homology search results ■■ -
sp_hit_id Q145L3
Definition sp|Q145L3|SURA_BURXL Chaperone surA OS=Burkholderia xenovorans (strain LB400)
Align length 77
Score (bit) 35.8
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919683|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_H08.
         (545 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q145L3|SURA_BURXL Chaperone surA OS=Burkholderia xenovorans (...    36   0.14 
sp|Q39D35|SURA_BURS3 Chaperone surA OS=Burkholderia sp. (strain ...    35   0.31 
sp|Q9LV72|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis thal...    35   0.31 
sp|Q1BTQ6|SURA_BURCA Chaperone surA OS=Burkholderia cenocepacia ...    32   2.0  
sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1      32   2.6  
sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus GN=I...    32   2.6  
sp|Q9CWV4|MAGBG_MOUSE Melanoma-associated antigen B16 OS=Mus mus...    31   3.4  
sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus GN=Prom1 PE=1 SV=1    31   4.4  
sp|Q18E49|DNLJ_HALWD DNA ligase OS=Haloquadratum walsbyi (strain...    30   5.8  
sp|O43491|E41L2_HUMAN Band 4.1-like protein 2 OS=Homo sapiens GN...    30   9.9  

>sp|Q145L3|SURA_BURXL Chaperone surA OS=Burkholderia xenovorans
           (strain LB400) GN=surA PE=3 SV=2
          Length = 450

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 143 VDELQNVVQNMSVDV-ELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPG 319
           VD +  VV N  +   EL+      T R+N     +PP  ++  +  + ++LE   +   
Sbjct: 38  VDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQLRQQVLNQMVLERIQLQKA 97

Query: 320 NEDIVPMDDERVTTTLE 370
            ED + +DD  V  TLE
Sbjct: 98  KEDGITIDDATVQKTLE 114


>sp|Q39D35|SURA_BURS3 Chaperone surA OS=Burkholderia sp. (strain
           383) GN=surA PE=3 SV=1
          Length = 452

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 110 AVSLILQTCTFVDELQNVVQN-MSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDM 286
           A +L  Q     DE+  VV N +    EL++       R+      +PPT ++  +  + 
Sbjct: 28  AQALGSQGAQLADEVVAVVNNDVITGRELDQRAGLIARRLQQQNAPVPPTDQLRAQVLNQ 87

Query: 287 LMLEATMVIPGNEDIVPMDDERVTTTLE 370
           ++LE   V    +D + +DD  V +TL+
Sbjct: 88  MVLERIQVQKAKDDGIRIDDATVQSTLQ 115


>sp|Q9LV72|GLR12_ARATH Glutamate receptor 1.2 OS=Arabidopsis
           thaliana GN=GLR1.2 PE=2 SV=1
          Length = 867

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 3/141 (2%)
 Frame = +2

Query: 125 LQTCTFVDELQNVVQNMSVDVELERPCSSKTHRMNPLRIEMPPTTEMS---DEFFDMLML 295
           L T  FV  L  V+           PC+ K   M      +  +  MS   D+F D L  
Sbjct: 227 LGTTVFVVHLSEVIATRLF------PCAEKLGMMGEGFAWILTSRSMSSFHDQFIDDLTK 280

Query: 296 EATMVIPGNEDIVPMDDERVTTTLES*SMHPYATSSSGDIVRVEIPTVDRLVEVTAHGVD 475
           EA   + G +  +PM  E    TL      P    +  +I R+ I        V AH V 
Sbjct: 281 EAMEGVVGFKSYIPMSKELHNFTLRWRKTLPVEEVTGSEITRLSIS------GVWAHDV- 333

Query: 476 AIGMDMLAKITRLPLAFGTLM 538
           A  +   A++TR+P    TL+
Sbjct: 334 AWSLASAAEVTRMPTVTSTLL 354


>sp|Q1BTQ6|SURA_BURCA Chaperone surA OS=Burkholderia cenocepacia
           (strain AU 1054) GN=surA PE=3 SV=1
          Length = 452

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +2

Query: 110 AVSLILQTCTFVDELQNVVQN-MSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDM 286
           A +L  Q     DE+  VV N +    EL++       R+      +PP  ++  +  + 
Sbjct: 28  AQALGSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQLRAQVLNQ 87

Query: 287 LMLEATMVIPGNEDIVPMDDERVTTTLE 370
           ++LE   V    +D + +DD  V  TL+
Sbjct: 88  MVLERIQVQKAKDDGIRIDDATVQATLQ 115


>sp|Q685J3|MUC17_HUMAN Mucin-17 OS=Homo sapiens GN=MUC17 PE=1 SV=1
          Length = 4493

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -3

Query: 489  SMPIASTPCAVTSTNLSTVGISTLTISPLELVAYGCIDYDSRVVVTLSSSIGTISS 322
            SMPI STP  V ST+L+++ +ST+ ++  E         D+R +VT  +S GT SS
Sbjct: 2622 SMPI-STPSEV-STSLTSILVSTMPVASSEASTLSTTPVDTRTLVT--TSTGTSSS 2673


>sp|P17852|ITA3_CRIGR Integrin alpha-3 OS=Cricetulus griseus
           GN=ITGA3 PE=1 SV=2
          Length = 1066

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 95  HVRDIAVSLILQTCTFVDELQNVVQNMSVDVELERPCSSKTHRM 226
           H RD+   L L T +  D LQ +   + VD  L+   S  THR+
Sbjct: 728 HTRDLKAQLQLSTSSHQDNLQPMTLILQVDYTLQASLSLMTHRL 771


>sp|Q9CWV4|MAGBG_MOUSE Melanoma-associated antigen B16 OS=Mus
           musculus GN=Mageb16 PE=2 SV=1
          Length = 363

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 32/108 (29%), Positives = 48/108 (44%)
 Frame = +2

Query: 80  QSSESHVRDIAVSLILQTCTFVDELQNVVQNMSVDVELERPCSSKTHRMNPLRIEMPPTT 259
           QSSE    D       QTC    +LQ  V   S+DVE   PCSS       L+ +    T
Sbjct: 3   QSSEECAADQG-----QTCEETQKLQ--VAAASIDVE--EPCSSPHLMATSLKDQTSEET 53

Query: 260 EMSDEFFDMLMLEATMVIPGNEDIVPMDDERVTTTLES*SMHPYATSS 403
           ++S +  +     + +++  ++D    D E  T +  S   HPY +SS
Sbjct: 54  QVSKDVEEPCS-SSQLLMASDQD----DSEDETASTSSDLQHPYDSSS 96


>sp|O54990|PROM1_MOUSE Prominin-1 OS=Mus musculus GN=Prom1 PE=1 SV=1
          Length = 867

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +2

Query: 8   SSLGARLEQSPMVVTDFEALPIRKQSSESHVRDIAVSLILQTCTFVDELQNVVQNMSVDV 187
           SSLG+ L  S +   D E   +    +E    D+  SL+ +  T +DE+ N +QN +VDV
Sbjct: 325 SSLGSSLNSSQLPSVDRELNTV----TEVDKTDLE-SLVKRGYTTIDEIPNTIQNQTVDV 379


>sp|Q18E49|DNLJ_HALWD DNA ligase OS=Haloquadratum walsbyi (strain
           DSM 16790) GN=ligA PE=3 SV=2
          Length = 736

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +2

Query: 221 RMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPGNEDIVPMDDERVTTTLES*SMHPYATS 400
           R+N + I + P+ + +D         + ++  G   I P+DD   TT   +   +PY ++
Sbjct: 4   RINDIVITVAPSGDSNDSH-----RHSQIICDGGRTIQPLDDSSETTLAYADPNNPYLSN 58

Query: 401 SSGDIVRVEIPTVDRLVEVTAHGVDAI 481
             GD   +E  + +  VE      +AI
Sbjct: 59  IDGDFRPIEQLSEEAAVEQATQLREAI 85


>sp|O43491|E41L2_HUMAN Band 4.1-like protein 2 OS=Homo sapiens
           GN=EPB41L2 PE=1 SV=1
          Length = 1005

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 146 DELQNVVQNMSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDE 274
           +E+    Q + V+V+ E+P  SK  + +  ++EM PT  +S E
Sbjct: 130 EEMAQKKQEIKVEVKEEKPSVSKEEKPSVSKVEMQPTELVSKE 172
tr_hit_id B1FWK5
Definition tr|B1FWK5|B1FWK5_9BURK SurA domain OS=Burkholderia graminis C4D1M
Align length 97
Score (bit) 39.3
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919683|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_H08.
         (545 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1FWK5|B1FWK5_9BURK SurA domain OS=Burkholderia graminis C4D1...    39   0.14 
tr|B2SX61|B2SX61_BURPP SurA domain OS=Burkholderia phytofirmans ...    37   0.52 
tr|B5WM08|B5WM08_9BURK SurA domain protein OS=Burkholderia sp. H...    37   0.52 
tr|B2JCX1|B2JCX1_BURP8 SurA domain protein OS=Burkholderia phyma...    36   1.2  
tr|B5WPM4|B5WPM4_9BURK Putative transcriptional regulator, GntR ...    36   1.5  
tr|B5VR70|B5VR70_YEAS6 YNR044Wp-like protein (Fragment) OS=Sacch...    36   1.5  
tr|B6MRE3|B6MRE3_BRAFL Putative uncharacterized protein OS=Branc...    35   3.4  
tr|B6MRE1|B6MRE1_BRAFL Putative uncharacterized protein OS=Branc...    35   3.4  
tr|A3LU72|A3LU72_PICST Predicted protein OS=Pichia stipitis GN=P...    34   5.8  
tr|A2W7J5|A2W7J5_9BURK Parvulin-like peptidyl-prolyl isomerase O...    33   7.6  
tr|B3MIA4|B3MIA4_DROAN GF12217 OS=Drosophila ananassae GN=GF1221...    33   7.6  
tr|Q64CX8|Q64CX8_9ARCH Putative uncharacterized protein OS=uncul...    33   7.6  
tr|A3QN12|A3QN12_ENTFC Putative uncharacterized protein OS=Enter...    33   9.9  
tr|A8J237|A8J237_CHLRE Component of the ESCRT-III complex OS=Chl...    33   9.9  
tr|B4NPE9|B4NPE9_DROWI GK17732 OS=Drosophila willistoni GN=GK177...    33   9.9  
tr|A8XL56|A8XL56_CAEBR CBR-PQN-72 protein OS=Caenorhabditis brig...    33   9.9  

>tr|B1FWK5|B1FWK5_9BURK SurA domain OS=Burkholderia graminis C4D1M
           GN=BgramDRAFT_1387 PE=4 SV=1
          Length = 453

 Score = 39.3 bits (90), Expect = 0.14
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = +2

Query: 143 VDELQNVVQNMSVDV-ELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPG 319
           VD +  VV N  +   ELE   S  T R+N     +PP  ++  +  + ++LE   +   
Sbjct: 41  VDTIAAVVNNGVITRRELEERVSLITRRLNQQNAPIPPADQLRQQVLNQMVLERIQLQKA 100

Query: 320 NEDIVPMDDERVTTTLES*SMHPYATSSSGDIVRVEI 430
            ED + +DD  V  TLE  +    A + S D+ R  I
Sbjct: 101 KEDGINIDDAAVQKTLERLAQ---ANNLSLDVYRARI 134


>tr|B2SX61|B2SX61_BURPP SurA domain OS=Burkholderia phytofirmans
           (strain DSM 17436 / PsJN) GN=Bphyt_0676 PE=3 SV=1
          Length = 453

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 143 VDELQNVVQNMSVDV-ELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPG 319
           VD +  VV N  +   EL+   S  T R+N     +PP  ++  +  + ++LE   +   
Sbjct: 41  VDTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQLRQQVLNQMVLERIQLQKA 100

Query: 320 NEDIVPMDDERVTTTLE 370
            ED + +DD  V  TLE
Sbjct: 101 KEDNINIDDATVQKTLE 117


>tr|B5WM08|B5WM08_9BURK SurA domain protein OS=Burkholderia sp. H160
           GN=BH160DRAFT_4111 PE=4 SV=1
          Length = 478

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 143 VDELQNVVQN-MSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPG 319
           VD +  VV N +    EL+       HR+N     +PP  ++  +    ++LE   +   
Sbjct: 65  VDTIAAVVNNGVITQRELDERAGLIAHRLNQQNAPVPPMDQLRQQVLTQMVLERIQLQKA 124

Query: 320 NEDIVPMDDERVTTTLE 370
            ED + +DD  V  TLE
Sbjct: 125 KEDGITIDDTAVERTLE 141


>tr|B2JCX1|B2JCX1_BURP8 SurA domain protein OS=Burkholderia phymatum
           (strain DSM 17167 / STM815) GN=Bphy_0397 PE=3 SV=1
          Length = 463

 Score = 36.2 bits (82), Expect = 1.2
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +2

Query: 143 VDELQNVVQN-MSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDMLMLEATMVIPG 319
           VD +  VV N +    EL+      T R+N     +PP  ++  +  + ++LE   +   
Sbjct: 42  VDTIAAVVNNGVITQRELDMRVGLITKRLNQQHAPIPPADQLRQQVLNQMVLERIQLQKA 101

Query: 320 NEDIVPMDDERVTTTLE 370
            ED + +DD  V  TLE
Sbjct: 102 REDGITVDDATVQRTLE 118


>tr|B5WPM4|B5WPM4_9BURK Putative transcriptional regulator, GntR
           family (Fragment) OS=Burkholderia sp. H160
           GN=BH160DRAFT_5027 PE=4 SV=1
          Length = 369

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 14/75 (18%)
 Frame = +2

Query: 323 EDIVPMDDERVTTTL---ES*SMHPYATSSSGDIVRVEIPT-------VDRL----VEVT 460
           E+ +P+D   +  TL   E+ ++   A +  GD V VE PT       ++RL    +EV 
Sbjct: 61  ENGLPVDPGEIVITLGATEAINLSLQAVARPGDTVAVESPTYYAMLHAIERLGMRAIEVA 120

Query: 461 AHGVDAIGMDMLAKI 505
            H VD I +D LAK+
Sbjct: 121 THPVDGIDIDALAKV 135


>tr|B5VR70|B5VR70_YEAS6 YNR044Wp-like protein (Fragment)
           OS=Saccharomyces cerevisiae (strain AWRI1631)
           GN=AWRI1631_143550 PE=4 SV=1
          Length = 505

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 35/137 (25%), Positives = 55/137 (40%)
 Frame = -3

Query: 498 ASISMPIASTPCAVTSTNLSTVGISTLTISPLELVAYGCIDYDSRVVVTLSSSIGTISSF 319
           ASI  P+ ST  + TS+N +T  +S+ + SP        +   S    + S S  +ISS 
Sbjct: 163 ASIISPVTSTLSSTTSSNPTTASLSSTSTSPSSTSTSSSLTSTSSSSTSTSPSSTSISSS 222

Query: 318 PGITIVASNMSMSKNXXXXXXXXXXXXLRGFIRCVLLEHGRSNSTSTDMFCTTFWSSSTK 139
              T ++S  + S +                          S+STST +  T+  SSST 
Sbjct: 223 STSTSLSSTSTSSSSTSTSPSSTSTS---------------SSSTSTSLSSTSISSSSTS 267

Query: 138 VHVCKINETAMSRTCDS 88
                 + +A S +  S
Sbjct: 268 TSPSSKSTSASSTSTSS 284


>tr|B6MRE3|B6MRE3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_85730 PE=4 SV=1
          Length = 325

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 511 TCNLCQHIHANCINAMCSD---LYQSIHSRDLNPHYITTRTSCIWMHRL 374
           TC LC+H+H   ++A  +D   L + +H+     H   TRT C   H L
Sbjct: 51  TCTLCRHVHTLQLHAHSADMCTLCRHVHTLQPRSHSADTRTLCSHAHTL 99


>tr|B6MRE1|B6MRE1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_85728 PE=4 SV=1
          Length = 411

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 511 TCNLCQHIHANCINAMCSD---LYQSIHSRDLNPHYITTRTSCIWMHRL 374
           TC LC+H+H   ++A  +D   L + +H+     H   TRT C   H L
Sbjct: 137 TCTLCRHVHTLQLHAHSADMCTLCRHVHTLQPRSHSADTRTLCSHAHTL 185


>tr|A3LU72|A3LU72_PICST Predicted protein OS=Pichia stipitis
           GN=PICST_31664 PE=4 SV=2
          Length = 669

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -3

Query: 513 KRVIFASISMPIASTPCAVTSTNLSTVGISTL 418
           K V  A +  PI  TPC VTST +S  G ST+
Sbjct: 343 KEVASAKLESPIMETPCTVTSTEISPGGNSTI 374


>tr|A2W7J5|A2W7J5_9BURK Parvulin-like peptidyl-prolyl isomerase
           OS=Burkholderia dolosa AUO158 GN=BDAG_00638 PE=4 SV=1
          Length = 454

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 110 AVSLILQTCTFVDELQNVVQN-MSVDVELERPCSSKTHRMNPLRIEMPPTTEMSDEFFDM 286
           A +L  Q     DE+  VV N +    EL++  S    R+      +PP  ++  +  + 
Sbjct: 30  AQALGSQGAQLADEVVAVVNNDVITGRELDQRVSLIARRLQQQNAPVPPADQLRAQVLNQ 89

Query: 287 LMLEATMVIPGNEDIVPMDDERVTTTLE 370
           ++LE   V    +D + +DD  V  TL+
Sbjct: 90  MVLERIQVQKAKDDGIRIDDATVQATLQ 117