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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919686
Clone id YMU001_000127_H11
Library
Length 340
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000127_H11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTACACGCCAAAAAGGTCCGAATTTTCTTCGCTCCACAGCTTGAGTCCTTTTCTCGCCTT
TACATTCTAAGATTGCTCTGCAAATTTTCCATTCTGTTGGTTGGGCTTTTGTGATCCTTC
GTTCTAGGTCCATTTTCTGTTGGTTGGGTCTTCTGCTTGCGTTAAAGCTTGTGGGTTCTT
GTGCTTTGTTGAGGTTGTCCATTGTGCCCATGACTTAAGTTCTCTGTTGCTTAAATCCTT
CCAGTTGGTCGGAAAAATTTGTCTTTTTTGTGATAACCATGCGCCGGAAGTGCATAAATC
AAAGAGTATAACTTCATTGTTCGCGTAGGTGTCTGTGAGA
■■Homology search results ■■ -
sp_hit_id B0G163
Definition sp|B0G163|EXOC5_DICDI Exocyst complex component 5 OS=Dictyostelium discoideum
Align length 63
Score (bit) 32.7
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919686|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_H11.
         (325 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0G163|EXOC5_DICDI Exocyst complex component 5 OS=Dictyosteli...    33   0.59 
sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh OS=...    32   1.3  
sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh OS=...    32   1.3  
sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh OS=...    32   1.3  
sp|Q99U54|EBHA_STAAN Extracellular matrix-binding protein ebhA O...    32   1.3  
sp|Q931R6|EBHA_STAAM Extracellular matrix-binding protein ebhA O...    32   1.3  
sp|A7X2C3|EBHA_STAA1 Extracellular matrix-binding protein ebhA O...    32   1.3  
sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh OS=...    31   1.7  
sp|Q6GGX3|EBH_STAAR Extracellular matrix-binding protein ebh OS=...    31   1.7  
sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh OS=...    31   1.7  
sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh OS=...    31   1.7  
sp|Q2FH04|EBH_STAA3 Extracellular matrix-binding protein ebh OS=...    31   1.7  
sp|A6QGY4|EBHA_STAAE Extracellular matrix-binding protein ebhA O...    31   1.7  
sp|P70434|IRF7_MOUSE Interferon regulatory factor 7 OS=Mus muscu...    30   2.9  
sp|A2C071|SYI_PROM1 Isoleucyl-tRNA synthetase OS=Prochlorococcus...    30   5.0  
sp|O93308|SMC1A_XENLA Structural maintenance of chromosomes prot...    30   5.0  
sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosomes protei...    30   5.0  
sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosomes prot...    30   5.0  
sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosomes prot...    30   5.0  
sp|O97593|SMC1A_BOVIN Structural maintenance of chromosomes prot...    30   5.0  
sp|Q7NF75|SYI_GLOVI Isoleucyl-tRNA synthetase OS=Gloeobacter vio...    29   6.5  
sp|Q5BKG8|NUSAP_XENTR Nucleolar and spindle-associated protein 1...    29   8.2  
sp|Q9JKA8|HCN3_RAT Potassium/sodium hyperpolarization-activated ...    29   8.5  
sp|O88705|HCN3_MOUSE Potassium/sodium hyperpolarization-activate...    29   8.5  
sp|Q9P1Z3|HCN3_HUMAN Potassium/sodium hyperpolarization-activate...    29   8.5  
sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated ...    29   8.5  
sp|Q9MZS1|HCN1_RABIT Potassium/sodium hyperpolarization-activate...    29   8.5  
sp|O88704|HCN1_MOUSE Potassium/sodium hyperpolarization-activate...    29   8.5  
sp|O60741|HCN1_HUMAN Potassium/sodium hyperpolarization-activate...    29   8.5  

>sp|B0G163|EXOC5_DICDI Exocyst complex component 5 OS=Dictyostelium
           discoideum GN=exoc5 PE=3 SV=1
          Length = 978

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -1

Query: 298 SYTL*FMHFRRM------VITKKTNFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFNASR 137
           SY   F HF+++      + TK  +F D+L+   QQ+    G +  +N   E  S  AS 
Sbjct: 343 SYQECFQHFKKLEKGVNTIGTKAVHFGDELDSVNQQKVKAQGALSLINYLLELNSVGASS 402

Query: 136 RPN 128
             N
Sbjct: 403 EEN 405


>sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain MW2) GN=ebh PE=1 SV=1
          Length = 9904

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQE 161
            N ++ LE  KQQ T  +G++DNLN AQ+
Sbjct: 6487 NSNENLEAAKQQATQSLGSLDNLNNAQK 6514


>sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain JH9) GN=ebh PE=4 SV=1
          Length = 10624

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFN 146
            N ++ LE  KQQ T  +G++DNLN AQ+    N
Sbjct: 7130 NGNENLEAAKQQATQSLGSLDNLNNAQKQAVTN 7162


>sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain JH1) GN=ebh PE=4 SV=1
          Length = 10624

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFN 146
            N ++ LE  KQQ T  +G++DNLN AQ+    N
Sbjct: 7130 NGNENLEAAKQQATQSLGSLDNLNNAQKQAVTN 7162


>sp|Q99U54|EBHA_STAAN Extracellular matrix-binding protein ebhA
            OS=Staphylococcus aureus (strain N315) GN=ebhA PE=4 SV=1
          Length = 6713

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFN 146
            N ++ LE  KQQ T  +G++DNLN AQ+    N
Sbjct: 3219 NGNENLEAAKQQATQSLGSLDNLNNAQKQAVTN 3251


>sp|Q931R6|EBHA_STAAM Extracellular matrix-binding protein ebhA
            OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
            GN=ebhA PE=1 SV=1
          Length = 6713

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFN 146
            N ++ LE  KQQ T  +G++DNLN AQ+    N
Sbjct: 3219 NGNENLEAAKQQATQSLGSLDNLNNAQKQAVTN 3251


>sp|A7X2C3|EBHA_STAA1 Extracellular matrix-binding protein ebhA
            OS=Staphylococcus aureus (strain Mu3 / ATCC 700698)
            GN=ebhA PE=4 SV=1
          Length = 6713

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPTSFN 146
            N ++ LE  KQQ T  +G++DNLN AQ+    N
Sbjct: 3219 NGNENLEAAKQQATQSLGSLDNLNNAQKQAVTN 3251


>sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ebh
            PE=4 SV=1
          Length = 10421

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPT 155
            N ++ LE  KQQ +  +G++DNLN AQ+ T
Sbjct: 7130 NGNENLEAAKQQASQSLGSLDNLNNAQKQT 7159


>sp|Q6GGX3|EBH_STAAR Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain MRSA252) GN=ebh PE=4
            SV=1
          Length = 10746

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQE 161
            N ++ LE  KQQ T  +G++DNLN AQ+
Sbjct: 7126 NGNENLEAAKQQATQSLGSLDNLNNAQK 7153


>sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain COL) GN=ebh PE=4 SV=1
          Length = 10498

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 244  NFSDQLEGFKQQRT*VMGTMDNLNKAQEPT 155
            N ++ LE  KQQ +  +G++DNLN AQ+ T
Sbjct: 7130 NGNENLEAAKQQASQSLGSLDNLNNAQKQT 7159
tr_hit_id Q23CW2
Definition tr|Q23CW2|Q23CW2_TETTH EF hand family protein OS=Tetrahymena thermophila SB210
Align length 61
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919686|Adiantum capillus-veneris mRNA, clone:
YMU001_000127_H11.
         (325 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q23CW2|Q23CW2_TETTH EF hand family protein OS=Tetrahymena the...    34   4.1  
tr|Q6MT43|Q6MT43_MYCMS Prolipoprotein OS=Mycoplasma mycoides sub...    33   7.0  
tr|Q21JX4|Q21JX4_SACD2 Putative uncharacterized protein OS=Sacch...    33   9.2  
tr|Q1DWQ7|Q1DWQ7_COCIM Predicted protein OS=Coccidioides immitis...    33   9.2  
tr|B4EFR4|B4EFR4_BURCJ Hypothetical phage protein OS=Burkholderi...    33   9.2  

>tr|Q23CW2|Q23CW2_TETTH EF hand family protein OS=Tetrahymena
            thermophila SB210 GN=TTHERM_00052280 PE=4 SV=1
          Length = 6110

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = -1

Query: 190  TMDNLNKAQEPTSFNASRRPNQQKMDLERRITKAQPTEWKICRAILECKGEKRTQAVERR 11
            T+  LN A   T+F  S+   QQK D E ++   Q  E K    + E KG+ + +  +R+
Sbjct: 3612 TLSELNNALADTAFYKSKSQQQQKKDQEEQVLSLQ--ERKDAAKLEEIKGQIKIKLTQRQ 3669

Query: 10   K 8
            K
Sbjct: 3670 K 3670


>tr|Q6MT43|Q6MT43_MYCMS Prolipoprotein OS=Mycoplasma mycoides subsp.
           mycoides SC GN=lpp PE=4 SV=1
          Length = 224

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 215 ATENLSHGHNGQPQQSTRTHKL*RKQKTQPTENGPRTKDHKSPTN 81
           A +N++      P +  RT K      T+P EN P+  D K P N
Sbjct: 23  ACKNINKSKKEDPSKPDRTPKTPENDSTKPEENQPKKPDDKKPNN 67


>tr|Q21JX4|Q21JX4_SACD2 Putative uncharacterized protein
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=Sde_1745 PE=4 SV=1
          Length = 238

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 291 LFDLCTSGAWLSQKRQIFPTNWKDLSNRELKSWAQWTTSTKH 166
           LFD C    W++   Q+    WK LSN + K+ A  TT  +H
Sbjct: 198 LFDFCMQ--WINHHPQLTAHAWKQLSNNQTKTNAITTTEAQH 237


>tr|Q1DWQ7|Q1DWQ7_COCIM Predicted protein OS=Coccidioides immitis
           GN=CIMG_05256 PE=4 SV=1
          Length = 170

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -2

Query: 297 VILFDLCTSGAWLSQKRQ-IFPTNWKDLSNRELKSWAQWTTSTKHKNPQALTQAEDPTNR 121
           +ILFD+C +  ++ + R+ I PT W+ LS ++ +S  +          Q+   + + T R
Sbjct: 72  IILFDVCDAAIYICRLREFIVPTKWRYLSLQKNQSVTR---------GQSRRSSRNETGR 122

Query: 120 KWT*NEGSQKPNQQNGKFAEQS*NVKA 40
                E S  P+Q    F E S +VK+
Sbjct: 123 ----FECSYNPDQPENNFRESSPSVKS 145


>tr|B4EFR4|B4EFR4_BURCJ Hypothetical phage protein OS=Burkholderia
           cepacia (strain J2315 / LMG 16656) GN=BceJ2315_45110
           PE=4 SV=1
          Length = 309

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -3

Query: 263 GYHKKDKFFRPTGRI*ATENLSHGHNG-QPQQSTRTHK------L*RKQKTQPTENGPRT 105
           G  ++ K   P+G +    +LSHG  G QPQ STR+H          K KT+ T +G RT
Sbjct: 128 GQRERKKTADPSGDV---PDLSHGTGGGQPQDSTRSHDTGTGTGTGSKPKTEGTNDGVRT 184

Query: 104 KDHKS 90
               S
Sbjct: 185 ASRAS 189