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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919689
Clone id YMU001_000128_A04
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_A04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGCTCATACATGCAGTGAATCTTTACTTTGGAGTCACCTATAACGTAAAGAGACATTAA
GTAAGTAAGTCCTACACCCCTTAGTCATAGTTGAAAACCAAATGTAGGTAATAAGTATGA
GTACTAATACCCTAATTTGTAGTCCATATAGATAAGTTATTCCATATTTTCTCAAATGTT
TCACAAGCCACGAGCGTGTGCCACCAAGGTCCATAATAATCATGCAATAAGCAGCCACTT
ACCACCACAAACCATATCAACCATATACCCTAACCCAACATACCCATATTCATAGCCATA
AACAGCCACCTACAATCATAACCAAGTTTCCAACCAACCATACCCGGCCAATATGAGCAA
TCCTGCCAAGATTTAAAATACCCAACACTAAAACGGCAAGAGAGGTAAGCTTGGTAACCA
AGCCATAG
■■Homology search results ■■ -
sp_hit_id Q980I8
Definition sp|Q980I8|AROE_SULSO Shikimate dehydrogenase OS=Sulfolobus solfataricus
Align length 32
Score (bit) 32.3
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919689|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_A04.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q980I8|AROE_SULSO Shikimate dehydrogenase OS=Sulfolobus solfa...    32   0.82 
sp|Q68801|POLG_HCVJK Genome polyprotein OS=Hepatitis C virus gen...    30   3.1  
sp|Q10269|AREH1_SCHPO Probable sterol O-acyltransferase 1 OS=Sch...    30   4.1  
sp|P51861|CDR1_HUMAN Cerebellar degeneration-related antigen 1 O...    30   5.3  
sp|Q6GPD0|RICS_XENLA Rho/Cdc42/Rac GTPase-activating protein RIC...    29   7.0  
sp|A8H1U8|GSH1_SHEPA Glutamate--cysteine ligase OS=Shewanella pe...    29   7.0  
sp|P0C0Y8|RCEL_RHOSH Reaction center protein L chain OS=Rhodobac...    29   9.1  
sp|Q3J1A5|RCEL_RHOS4 Reaction center protein L chain OS=Rhodobac...    29   9.1  
sp|Q8J257|PACC_PARBR pH-response transcription factor pacC/RIM10...    29   9.1  
sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 OS=Macac...    29   9.1  

>sp|Q980I8|AROE_SULSO Shikimate dehydrogenase OS=Sulfolobus
           solfataricus GN=aroE PE=3 SV=1
          Length = 269

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 187 LVKHLRKYGITYLYGLQIRVLVLILITYIWFS 92
           L+K+ +KYGI Y+ GL+I V   +    IWF+
Sbjct: 219 LIKNAKKYGIQYINGLEILVNQAVEAEKIWFN 250


>sp|Q68801|POLG_HCVJK Genome polyprotein OS=Hepatitis C virus
           genotype 3k (isolate JK049) PE=3 SV=3
          Length = 3019

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -2

Query: 262 G*YGLWW*VAAYCMIIMDLGGTRSWLVK----HLRKYGITYLYGLQIRVLVLILITYIWF 95
           G +G+WW + A+C+         +W V+     +  Y I  L+ L + VL+L    Y W 
Sbjct: 766 GTHGIWWSLVAFCV---------AWHVRGRIFPIAVYSIVGLWPLLLLVLMLPYRAYAWT 816

Query: 94  STMT 83
            T T
Sbjct: 817 GTDT 820


>sp|Q10269|AREH1_SCHPO Probable sterol O-acyltransferase 1
           OS=Schizosaccharomyces pombe GN=SPAC13G7.05 PE=2 SV=1
          Length = 537

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -1

Query: 266 IWLIWFVVVSGCLLH-----------DYYGPWWHTLVACETFEKIWN 159
           ++LI F ++  C+L+            +YG WW+T V  + F + WN
Sbjct: 391 LYLIMFYLIFDCILNAFAEITKFADRGFYGAWWNT-VTWDEFSREWN 436


>sp|P51861|CDR1_HUMAN Cerebellar degeneration-related antigen 1
           OS=Homo sapiens GN=CDR1 PE=2 SV=2
          Length = 262

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
 Frame = -1

Query: 383 GYFKSWQDCSYWPGMVGWKLGYDCRWLFMAMNMGMLG*GIWLIWFVVVSG-CLLHDYYGP 207
           GY+K+W    +W   + WK      W+F    +G      W  W  + SG C L    G 
Sbjct: 177 GYWKTW---IFWKTWIFWKT-----WIFRKTYIG------WKTW--IFSGRCGLTGRPGF 220

Query: 206 ------WWHTLVACETFEKIWNNLSIWTT 138
                 +W TL   +T+   W  L  W T
Sbjct: 221 GGRRRFFWKTLTDWKTWISFWKTLIDWKT 249


>sp|Q6GPD0|RICS_XENLA Rho/Cdc42/Rac GTPase-activating protein RICS
            OS=Xenopus laevis GN=rics PE=2 SV=1
          Length = 1940

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = +2

Query: 104  VGNKYEY*YPNLXXXXXXXXXFSQMFHKPRACATKVHNNHAISSHLPPQ 250
            +GN Y + YP+               H   A A K +    +  H+PPQ
Sbjct: 1360 IGNAYRHPYPSNTESESLKEPLEPFLHHKPAVAPKTYRAETLLPHIPPQ 1408


>sp|A8H1U8|GSH1_SHEPA Glutamate--cysteine ligase OS=Shewanella
           pealeana (strain ATCC 700345 / ANG-SQ1) GN=gshA PE=3
           SV=1
          Length = 522

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 217 IMDLGGTRSWLVKHLRKYGITYLYGLQIRVL 125
           I D G + S  +K L + G+TY YG Q++++
Sbjct: 117 IADYGSSNSGQMKSLYRKGLTYRYGAQMQII 147


>sp|P0C0Y8|RCEL_RHOSH Reaction center protein L chain OS=Rhodobacter
           sphaeroides GN=pufL PE=1 SV=2
          Length = 282

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 409 LTSLAVLVLGILNLGRIAHIGRVWLVGNLVMIVGGCLWL*IWVCWVRVYG*YGLWW 242
           L   ++  LGI  LG +  +  V+    L MI+ G +W   WV W +       WW
Sbjct: 220 LVGYSIGTLGIHRLGLLLSLSAVFFSA-LCMIITGTIWFDQWVDWWQ-------WW 267


>sp|Q3J1A5|RCEL_RHOS4 Reaction center protein L chain OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=pufL PE=3 SV=3
          Length = 282

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -2

Query: 409 LTSLAVLVLGILNLGRIAHIGRVWLVGNLVMIVGGCLWL*IWVCWVRVYG*YGLWW 242
           L   ++  LGI  LG +  +  V+    L MI+ G +W   WV W +       WW
Sbjct: 220 LVGYSIGTLGIHRLGLLLSLSAVFFSA-LCMIITGTIWFDQWVDWWQ-------WW 267


>sp|Q8J257|PACC_PARBR pH-response transcription factor pacC/RIM101
           OS=Paracoccidioides brasiliensis GN=pacC PE=3 SV=2
          Length = 706

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 AATYHHKPYQPYTLTQHTHIHSHKQPPTIITKFPT 335
           ++T+HH P  P     HTH H+H  P +    +PT
Sbjct: 486 SSTHHHIP--PSHHYTHTHNHNHNHPNSSAGMYPT 518


>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 OS=Macaca
           fascicularis GN=SLC44A5 PE=2 SV=1
          Length = 717

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = -2

Query: 340 WLVGNLVMIVGGCLWL*IWVCWVRVYG*--YGLWW*VAAYCMIIMDLGGTRSWLVKHLRK 167
           W+   L+  + GCL+   WV  + V G   YG+W     Y             L +H R 
Sbjct: 257 WIFLILLRFIAGCLF---WVFMIGVIGIIGYGIWHCYQQYTN-----------LQEHPRS 302

Query: 166 YGITYLYGLQIRVLVLILITYIWFSTMTKGC 74
               Y  G+Q  + +   +   WF+ M   C
Sbjct: 303 VLTVYDIGIQTNISMYFELQQTWFTLMIILC 333
tr_hit_id A7S9E1
Definition tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectensis
Align length 85
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919689|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_A04.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectens...    35   1.4  
tr|Q1IQ25|Q1IQ25_ACIBL Putative uncharacterized protein OS=Acido...    35   1.9  
tr|B3LXX0|B3LXX0_DROAN GF17645 OS=Drosophila ananassae GN=GF1764...    34   3.2  
tr|Q5X4P4|Q5X4P4_LEGPA Putative uncharacterized protein OS=Legio...    34   4.2  
tr|B5CMX6|B5CMX6_9FIRM Putative uncharacterized protein OS=Rumin...    34   4.2  
tr|B6KGK8|B6KGK8_TOXGO P-type ATPase, putative OS=Toxoplasma gon...    33   5.5  
tr|Q24WK5|Q24WK5_DESHY Putative uncharacterized protein OS=Desul...    33   7.2  
tr|B8FYQ2|B8FYQ2_DESHD Putative uncharacterized protein OS=Desul...    33   7.2  
tr|B6P5G2|B6P5G2_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|Q6C0K5|Q6C0K5_YARLI YALI0F23903p OS=Yarrowia lipolytica GN=YA...    33   7.2  
tr|A5CXZ9|A5CXZ9_VESOH Putative uncharacterized protein OS=Vesic...    33   9.4  
tr|B7AXB5|B7AXB5_9FIRM Putative uncharacterized protein OS=Mitsu...    33   9.4  
tr|A7P596|A7P596_VITVI Chromosome chr4 scaffold_6, whole genome ...    33   9.4  
tr|A1C7I0|A1C7I0_ASPCL C2H2 finger domain protein FlbC OS=Asperg...    33   9.4  

>tr|A7S9E1|A7S9E1_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g208806 PE=4 SV=1
          Length = 584

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
 Frame = +3

Query: 126 NTLICSPYR*VIPYF--LKCFTSHERVPPRSIIIMQ*AATY--HHKPYQPYTLTQHTHIH 293
           +T + +PY+  + Y   +K +T+  R P  + +     A Y  H  P+     T HT IH
Sbjct: 324 HTQLSTPYKLSLEYCSQIKPYTAIHRYPHHTQLSTPYTAIYTIHSYPHHTQLSTPHTAIH 383

Query: 294 S------HKQPPTIITKFPTNHTRP 350
           +      H QP T I  F T H+ P
Sbjct: 384 TIHSYLHHTQPSTAIHTFHTIHSYP 408


>tr|Q1IQ25|Q1IQ25_ACIBL Putative uncharacterized protein
           OS=Acidobacteria bacterium (strain Ellin345)
           GN=Acid345_2024 PE=4 SV=1
          Length = 526

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 26/130 (20%)
 Frame = -2

Query: 406 TSLAVLVLGILNLGRIAHIGRVWLVGNLVMIVGGCLWL*IWVCWVRVYG*YG-------- 251
           TSL  L L    L  +AH G ++L G L   +GG  W         +    G        
Sbjct: 88  TSLYALRL----LPALAHAGSIFLAGMLARELGGRRWAMFLAALATLMAPIGLAFGHLFT 143

Query: 250 ------LWW*VAAYCMI-IMDLGGTRSWL-------VKHLRKYGITY-LYGLQIRVLVLI 116
                 L W   AYC++ I++ G  R WL       +  L KYGI + + GL + V++  
Sbjct: 144 MNAFDPLLWVAIAYCVVRIVNTGNQRLWLAVGGLTGITLLNKYGIAFWIVGLIVGVVLTP 203

Query: 115 LITYI---WF 95
           L + +   WF
Sbjct: 204 LRSSLKQKWF 213


>tr|B3LXX0|B3LXX0_DROAN GF17645 OS=Drosophila ananassae GN=GF17645
           PE=4 SV=1
          Length = 1819

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 183 TSHERVPPRS--IIIMQ*AATYHHKPYQPYTLTQHTHIHSHKQPP 311
           T+ + +PP++  + ++  A   HH+  QP+   Q  H+H H QPP
Sbjct: 145 TAQQPLPPQTTPVSLVMHAPPPHHQMPQPHQQPQQHHLHHHHQPP 189


>tr|Q5X4P4|Q5X4P4_LEGPA Putative uncharacterized protein
           OS=Legionella pneumophila (strain Paris) GN=lpp1632 PE=4
           SV=1
          Length = 372

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
 Frame = -2

Query: 424 GLVTKLTSLAVLVLGIL-------------NLGRIAHIGRVWLV----GNLVMIVGGCLW 296
           G V+  TS+A  + G+L                 +A +G ++L+     N+   +   LW
Sbjct: 197 GFVSTFTSIATTLSGVLAGSLLINPCNQFKKFYLLAGVGMLFLLLGWLWNMSFPINKNLW 256

Query: 295 L*IWVCWVRVYG*YGLWW*VAAYCMIIMDLGGTRSWLVKHLRKYGITYLYGLQIRVLVLI 116
              +V W       GL   V A+C +++D  G + W V   + +G+  L+     VL L+
Sbjct: 257 TSSYVLWTS-----GLALLVFAFCYLLIDRLGVKKWSV-FFKIFGMNALFAFVFHVL-LL 309

Query: 115 LITYIWFSTMTKGCRTYLLN 56
            + Y +  T   G +  L++
Sbjct: 310 KLQYAFKITTPDGSKMALIS 329


>tr|B5CMX6|B5CMX6_9FIRM Putative uncharacterized protein
           OS=Ruminococcus lactaris ATCC 29176 GN=RUMLAC_00811 PE=4
           SV=1
          Length = 380

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 40/167 (23%)
 Frame = -2

Query: 421 LVTKLTSLAVLVLGILNLGRIAHIG----RVWLV--GNLVMIVGGCLWL*--------IW 284
           ++T++  ++++VLG+L +G I   G    RVW V  G +   VGG             IW
Sbjct: 59  VLTQVELISLIVLGVLGIG-ICLTGWKFVRVWAVIFGFVSGTVGGAAAAYFAGLAVDYIW 117

Query: 283 V-------------CWVRVYG*YGLWW*VAAYCMIIMDLGGTRSWLVKHLRKYGITYLYG 143
           +              W +  G + L W + A   +             HL K     L+G
Sbjct: 118 IPGLVVGVILTALSIWKKKVGGFWLCWLMTALVGV-------------HLLKPDSVILWG 164

Query: 142 LQIRVLVLILITYIWFST-------------MTKGCRTYLLNVSLRY 41
           + I V +L+ + +IWFS+             +T  C  YL+ V++R+
Sbjct: 165 VCIGVGLLVAVVFIWFSSIVTIFVTSIFGGMVTGSCIYYLIPVNMRW 211


>tr|B6KGK8|B6KGK8_TOXGO P-type ATPase, putative OS=Toxoplasma gondii
            ME49 GN=TGME49_045510 PE=4 SV=1
          Length = 2301

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = -2

Query: 337  LVGNLVMIVGGCLWL*IWVCWVRVYG*YGLWW*VAAYCMII-----MDLGGTRSWLVKHL 173
            LV NLVM+     W   W  W+ ++  +G WW   A C  I      DL G+   L +  
Sbjct: 2030 LVCNLVMVPFMHTWF--WFIWLGIFLDFGFWWMSLAICPRISDTFCTDLAGSVEALHQDP 2087

Query: 172  RKYGITYLYGLQIRVLVLILITY-IWF 95
            R     Y +   I V V +   Y IWF
Sbjct: 2088 R-----YYFACIIAVFVALFPQYLIWF 2109


>tr|Q24WK5|Q24WK5_DESHY Putative uncharacterized protein
           OS=Desulfitobacterium hafniense (strain Y51) GN=DSY1798
           PE=4 SV=1
          Length = 148

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 403 SLAVLVLGILNLGRIAHIGRVWLVGNLVMIVG 308
           SLAVL LG  NL ++ H+ + WL+G  +  +G
Sbjct: 50  SLAVLFLGKGNLSQVTHVPKPWLIGGALGAIG 81


>tr|B8FYQ2|B8FYQ2_DESHD Putative uncharacterized protein
           OS=Desulfitobacterium hafniense (strain DCB-2)
           GN=Dhaf_2952 PE=3 SV=1
          Length = 146

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 403 SLAVLVLGILNLGRIAHIGRVWLVGNLVMIVG 308
           SLAVL LG  NL ++ H+ + WL+G  +  +G
Sbjct: 48  SLAVLFLGKGNLSQVTHVPKPWLIGGALGAIG 79


>tr|B6P5G2|B6P5G2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_102954 PE=4 SV=1
          Length = 567

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +3

Query: 174 KCFTSHERVPPRSIIIMQ*AATYHHKPYQPYTLTQH-THIHSHKQPPTIITKFPTNHT 344
           +C   H  +P          AT H   Y P   T H T    H   PT  T  PT+HT
Sbjct: 418 QCAVEHSSLP---------TATQHQHTYTPTAATHHPTATIQHPNTPTAATNIPTDHT 466


>tr|Q6C0K5|Q6C0K5_YARLI YALI0F23903p OS=Yarrowia lipolytica
           GN=YALI0F23903g PE=3 SV=1
          Length = 540

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = -2

Query: 421 LVTKLTSLAVLVLGILNLGRIAHIGRVWLV--GNLVMIVGGCLWL*IWVCWVRVYG*YGL 248
           L+T  TSL  L+ G++        GR W++   N++ +VG  +       W  + G + +
Sbjct: 100 LITASTSLGALLGGVIAGAMCDFFGRKWVITFANILFLVGAAIQCGAHAVWTMIGGRFVM 159

Query: 247 WW*V--AAYC--MIIMDLGGTR 194
            W V  A+ C  + I +L  TR
Sbjct: 160 GWGVGIASLCAPLYISELAPTR 181