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NBDC - LSDB Archive
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BP919694
Clone id YMU001_000128_A12
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTCGTCAAGAGTTCAGAAGAAGCGTTGTGCTGCAGTCAAGCAAGAGTGCATAACAGCTT
ATTTGTATTGGACACAGAGGAAAAGCTTCACTGTAGCCCTGTTCAAGATTCTGTGACGAG
CTTGCATAATAGGTTACATTTTGAAACAACATGGACAGAGCTTGGTGTTTACTGTAATGG
TGACAAGTTAGATGCCGGAGTGGAGGAAGGCTTAAACATTTCTTATTTAGAGACTAACCC
TCATGGCCTTTGGAAAGTGCCAAGCATTGGGGAGGGAGATCATCTTGATCGGCACGACAA
GAAATCTGCTGATGCACTTCAGCAATGTGTTGAGATACACAATGGTCTCCTAAAACGAAC
TGATGAGTTTAACTCACATGCACACTCATCTTTTGTTGAAAGGTGAGAAATGATCCTTTA
ATAATCTCTTGTAATGTGTATTCTAGAATTCTGACGTTTTGAATTGTTAAAAATGTTAAG
AAGTGGACCTATTGCAATGTGGGCTTAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P45011
Definition sp|P45011|LPXB_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus influenzae
Align length 65
Score (bit) 35.0
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919694|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_A12.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P45011|LPXB_HAEIN Lipid-A-disaccharide synthase OS=Haemophilu...    35   0.20 
sp|A5UD44|LPXB_HAEIE Lipid-A-disaccharide synthase OS=Haemophilu...    35   0.20 
sp|Q4QLM6|LPXB_HAEI8 Lipid-A-disaccharide synthase OS=Haemophilu...    33   0.59 
sp|O89032|SPD2A_MOUSE SH3 and PX domain-containing protein 2A OS...    33   1.0  
sp|Q5TCZ1|SPD2A_HUMAN SH3 and PX domain-containing protein 2A OS...    33   1.0  
sp|Q9T390|TILS_NEPOL tRNA(Ile)-lysidine synthase, chloroplastic ...    30   5.1  
sp|O39929|POLG_HCVED Genome polyprotein OS=Hepatitis C virus gen...    30   6.7  
sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter cryoha...    30   6.7  
sp|A7Z5B3|BIOD_BACA2 Dethiobiotin synthetase OS=Bacillus amyloli...    30   6.7  
sp|Q04XL9|SYFB_LEPBL Phenylalanyl-tRNA synthetase beta chain OS=...    30   8.7  
sp|Q04VV0|SYFB_LEPBJ Phenylalanyl-tRNA synthetase beta chain OS=...    30   8.7  
sp|Q75DU5|RIX1_ASHGO Pre-rRNA-processing protein RIX1 OS=Ashbya ...    30   8.7  

>sp|P45011|LPXB_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae GN=lpxB PE=3 SV=2
          Length = 390

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+SV++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>sp|A5UD44|LPXB_HAEIE Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae (strain PittEE) GN=lpxB PE=3 SV=1
          Length = 390

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+SV++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>sp|Q4QLM6|LPXB_HAEI8 Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae (strain 86-028NP) GN=lpxB PE=3 SV=1
          Length = 390

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+S ++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDESAVKNRHILIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>sp|O89032|SPD2A_MOUSE SH3 and PX domain-containing protein 2A OS=Mus
            musculus GN=Sh3pxd2a PE=1 SV=1
          Length = 1124

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
 Frame = +2

Query: 65   VLDTEEK-LHCSPVQ----DSVTSLHNRLHFETTWTELGVYCNGDKLDAGVEEGLNISYL 229
            +L T+ K +  SPV+    +    +HN L  +  +  +  Y  GD+  AG +EG+++  L
Sbjct: 1036 LLPTQRKGIPVSPVRPKPIEKSQFIHNNL--KDVYISIADY-EGDEETAGFQEGVSMEVL 1092

Query: 230  ETNPHGLW 253
            E NP+G W
Sbjct: 1093 EKNPNGWW 1100


>sp|Q5TCZ1|SPD2A_HUMAN SH3 and PX domain-containing protein 2A OS=Homo
            sapiens GN=SH3PXD2A PE=1 SV=1
          Length = 1133

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 122  LHNRLHFETTWTELGVYCNGDKLDAGVEEGLNISYLETNPHGLW 253
            +HN L  +  +  +  Y  GD+  AG +EG+++  LE NP+G W
Sbjct: 1069 IHNNL--KDVYVSIADY-EGDEETAGFQEGVSMEVLERNPNGWW 1109


>sp|Q9T390|TILS_NEPOL tRNA(Ile)-lysidine synthase, chloroplastic
           OS=Nephroselmis olivacea GN=tilS PE=3 SV=1
          Length = 367

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 2   LVKSSEEALCCSQARVHNSLFVLDTEEKLHCSPVQDSVTSLHNRLHFETTWT-ELG-VYC 175
           +++  EEA C  Q  V  S  +L     + CS  QDSVT L      +T WT  LG VYC
Sbjct: 39  ILREFEEA-CLLQGLVSPSTRLL-----ISCSGGQDSVTLLFLLCQLQTNWTWRLGVVYC 92

Query: 176 N 178
           N
Sbjct: 93  N 93


>sp|O39929|POLG_HCVED Genome polyprotein OS=Hepatitis C virus genotype
            4a (isolate ED43) PE=3 SV=3
          Length = 3008

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +2

Query: 5    VKSSEEALCCSQARVHNSLFVLDT---EEKLHCSPVQDSVTSLHNRLHFETT 151
            V  SE+ +CCS +       V      E KL  SP+ +S+   HN ++  TT
Sbjct: 2408 VSGSEDVVCCSMSYSWTGALVTPCAAEESKLPISPLSNSLLRHHNMVYATTT 2459


>sp|Q1Q932|MDH_PSYCK Malate dehydrogenase OS=Psychrobacter
           cryohalolentis (strain K5) GN=mdh PE=3 SV=1
          Length = 329

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 143 ETTWTELGVYCNGDKLDAGVEEGLNISYLETNPHGLWKV 259
           E  W  +GVY NG   + G+ +GL  S+  T  +G W +
Sbjct: 260 ENDWVSMGVYSNG---EYGIAKGLIYSFPVTCANGDWSI 295


>sp|A7Z5B3|BIOD_BACA2 Dethiobiotin synthetase OS=Bacillus
           amyloliquefaciens (strain FZB42) GN=bioD PE=3 SV=1
          Length = 233

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +2

Query: 161 LGVYCNGDKLDAGVEEGLNISYLETNPHGLWKVPSIGEGDHLDRHDKKSADALQQCVEIH 340
           LG+  NG +   G++E  N S +ET    L KVP +G    LD     S++ +Q  +E H
Sbjct: 167 LGIIINGVRSRPGLDEKTNPSMIET----LCKVPILGITPKLDH---VSSENIQHMIEKH 219


>sp|Q04XL9|SYFB_LEPBL Phenylalanyl-tRNA synthetase beta chain
           OS=Leptospira borgpetersenii serovar Hardjo-bovis
           (strain L550) GN=pheT PE=3 SV=1
          Length = 802

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 38  QARVHNSLFVLDTEEKLHCSPVQDSVTSLHNRLHFETTWTELGVYCNGDKLDA 196
           + R+H  +  ++T  KL  +  Q  +T +  RLHF  +W        GD+L+A
Sbjct: 409 EVRIHTDIHFINT--KLGITLSQGDITDILERLHFMVSW-------KGDRLEA 452
tr_hit_id A3DSX0
Definition tr|A3DSX0|A3DSX0_MALDO Malate dehydrogenase OS=Malus domestica
Align length 58
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919694|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_A12.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3DSX0|A3DSX0_MALDO Malate dehydrogenase OS=Malus domestica P...    35   1.7  
tr|A4NDA9|A4NDA9_HAEIN Lipid-A-disaccharide synthase OS=Haemophi...    35   2.1  
tr|A4N8C3|A4N8C3_HAEIN Lipid-A-disaccharide synthase OS=Haemophi...    35   2.1  
tr|B4J8U4|B4J8U4_DROGR GH19924 OS=Drosophila grimshawi GN=GH1992...    35   2.8  
tr|Q8H0P9|Q8H0P9_MANSQ Malate dehydrogenase OS=Mantoniella squam...    34   3.7  
tr|A4NP73|A4NP73_HAEIN Lipid-A-disaccharide synthase OS=Haemophi...    33   6.2  
tr|A4NJS5|A4NJS5_HAEIN Lipid-A-disaccharide synthase OS=Haemophi...    33   6.2  
tr|A4MVU9|A4MVU9_HAEIN Ribonuclease OS=Haemophilus influenzae 22...    33   6.2  
tr|B4L093|B4L093_DROMO GI12315 OS=Drosophila mojavensis GN=GI123...    33   6.4  
tr|Q88GN0|Q88GN0_PSEPK DNA helicase-related protein OS=Pseudomon...    33   8.1  
tr|A6EN37|A6EN37_9BACT Peptidyl-prolyl cis-trans isomerase OS=un...    33   8.3  
tr|A7Q1T9|A7Q1T9_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    33   8.3  
tr|A7Q1T8|A7Q1T8_VITVI Malate dehydrogenase OS=Vitis vinifera GN...    33   8.3  
tr|Q4PN63|Q4PN63_IXOSC Putative 18.7 kDa secreted protein-like (...    33   8.3  
tr|B6K571|B6K571_SCHJP Zinc finger protein RTS2 OS=Schizosacchar...    33   8.3  

>tr|A3DSX0|A3DSX0_MALDO Malate dehydrogenase OS=Malus domestica PE=2
           SV=1
          Length = 332

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 22/58 (37%), Positives = 28/58 (48%)
 Frame = +2

Query: 143 ETTWTELGVYCNGDKLDAGVEEGLNISYLETNPHGLWKVPSIGEGDHLDRHDKKSADA 316
           E TW  +GVY +G      V  GL  S+  T  HG WK   I +G  +D   +K  DA
Sbjct: 264 EGTWVSMGVYSDG---SYDVPSGLIFSFPVTCQHGEWK---IVQGLSIDEFSRKKLDA 315


>tr|A4NDA9|A4NDA9_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae PittAA GN=lpxB PE=4 SV=1
          Length = 390

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+SV++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>tr|A4N8C3|A4N8C3_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae 3655 GN=lpxB PE=4 SV=1
          Length = 390

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+SV++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSVYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>tr|B4J8U4|B4J8U4_DROGR GH19924 OS=Drosophila grimshawi GN=GH19924
           PE=4 SV=1
          Length = 317

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
 Frame = -3

Query: 344 HCVSQHIAEVHQQISCRADQDDLPPQCLAL-----SKGHEG*SLNKKCLSLPPLRHLTCH 180
           H   QH  + HQQ      Q  L P  L        +  +     ++ L L P  H   H
Sbjct: 146 HAQHQHQQQQHQQQQHHQQQQQLLPHHLQQHQHQHQQHQQQQQQQQQHLGLTPALHHHHH 205

Query: 179 HYSKHQALSMLFQNVTYYASSSQNLEQGYSEAF-----PLCPIQISCYA 48
           H+  HQ LS L QN  Y+     +    + + F      L P+ +S YA
Sbjct: 206 HHHHHQQLS-LHQNHLYFNGLGHHSHHHHRQIFSHLQSALLPLSVSKYA 253


>tr|Q8H0P9|Q8H0P9_MANSQ Malate dehydrogenase OS=Mantoniella squamata
           GN=nad-MDH PE=2 SV=1
          Length = 332

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +2

Query: 149 TWTELGVYCNGDKLDAGVEEGLNISYLETNPHGLWKVPSIGEGDHLDRHDKKSADA 316
           TW  +GV   G +   GVEEGL  S+  T   G W   SI +G  +D   +   DA
Sbjct: 261 TWVSMGVVSPGGEAAYGVEEGLMYSFPVTCVDGKW---SIVQGLTIDERSRALMDA 313


>tr|A4NP73|A4NP73_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae PittII GN=lpxB PE=4 SV=1
          Length = 390

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+S ++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>tr|A4NJS5|A4NJS5_HAEIN Lipid-A-disaccharide synthase OS=Haemophilus
           influenzae PittHH GN=lpxB PE=4 SV=1
          Length = 390

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+S ++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>tr|A4MVU9|A4MVU9_HAEIN Ribonuclease OS=Haemophilus influenzae
           22.1-21 GN=CGSHi22121_03065 PE=3 SV=1
          Length = 585

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -3

Query: 473 FLTIQNVRILEYTLQEIIKGSFLT--FQQKMSVHVS*THQFVLGDHCVSQHIAEVHQQIS 300
           ++++ N+   E  + E+I+         +K+S ++S     V   H + QH  ++HQ+I 
Sbjct: 310 YISLPNLLANEMLVPEMIQEECTPELLAEKLSAYLSDDESAVKNRHVLIQHFTDLHQKIQ 369

Query: 299 CRADQ 285
           C AD+
Sbjct: 370 CNADK 374


>tr|B4L093|B4L093_DROMO GI12315 OS=Drosophila mojavensis GN=GI12315
           PE=4 SV=1
          Length = 323

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
 Frame = +2

Query: 53  NSLFVLDTEEKL----HCSPVQDSVTSLHNRLHFETTWTEL-GVYCNGDKLDAGVEEGLN 217
           N+L  ++ +EK         + D    L   L+ ++ +T   G         A     +N
Sbjct: 144 NALLEMEVDEKEVLQEKLQRLMDETRDLKQELNVKSRYTPANGTTTTTTASSAAGNSSMN 203

Query: 218 ISYLETNPHGLWKVPSIGEGDHLDRHDKKSADALQQCVEIHNGLLKRTDEFNSHAHS 388
            S   + P+G+     +G GD L +HD  +  A    V   NG L   +E+N   HS
Sbjct: 204 SS--ASLPNGI-----VGNGDILLQHDNAATKATSMSVNALNGSLNNRNEYNQQQHS 253


>tr|Q88GN0|Q88GN0_PSEPK DNA helicase-related protein OS=Pseudomonas
            putida (strain KT2440) GN=PP3691 PE=4 SV=1
          Length = 2207

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -3

Query: 233  SLNKKCLSLP-PLRHLTCHHYSKHQALSMLFQNVTYYASSSQNLEQGYS--EAFPLCPI 66
            S+  +C+S   P+R+L  H+ S+H++L + F N  YY S        ++  +A  LCP+
Sbjct: 1614 SILDECISANLPMRNLNWHYRSRHESL-IAFSNQRYYGSKLVTFPSPFTADKAVKLCPV 1671