NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919696
Clone id YMU001_000128_B02
Library
Length 361
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TACAACAGAAAAAAATGTGTCAACCCGACCAAGAAACCGTTTCTGACAAGTCCTTCTGAG
CATTTCCTTGTCATTCAACAAGGTTCAAGATGGATAATGTCTGCATAAATATGTACGAAA
CAGGAGGGCATGTGGCATCTTGTAATACAATATGCTAGCTGCAATGCCCTTTGAACAAGC
TGCTCAGAGAGTAGCGGTGTCTAAGCTGCAAAGCAAATAGAGAGTTACCCATAGGAAAGA
TCAATACCCAATTCAGCCTTTCGATTTTTGTCAAAGACATGCTACCTTTGACTCAGCATC
ATCTTGTGTGCTGTGCGCTCACAATGCACTTTGCTTAATGCAGTGTCTCGCACATGCTTC
A
■■Homology search results ■■ -
sp_hit_id Q9QY73
Definition sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus
Align length 62
Score (bit) 28.9
E-value 8.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919696|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B02.
         (361 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus G...    29   8.4  

>sp|Q9QY73|TMM59_MOUSE Transmembrane protein 59 OS=Mus musculus
           GN=Tmem59 PE=2 SV=2
          Length = 323

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 126 GHVASCNTIC*LQCPLNKLLRE*RCLSCKANRELPIGKINTQFSLSIFVKDMLPLTQHHL 305
           G  ASC+  C L  PL+   +E    +C+    L        FS+  FV D L L +  L
Sbjct: 43  GDTASCHRACQLTYPLHTYPKEEELYACQRGCRL--------FSICQFVDDGLDLNRTKL 94

Query: 306 VC 311
            C
Sbjct: 95  EC 96
tr_hit_id A0DUT3
Definition tr|A0DUT3|A0DUT3_PARTE Chromosome undetermined scaffold_65, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 73
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919696|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B02.
         (361 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0DUT3|A0DUT3_PARTE Chromosome undetermined scaffold_65, whol...    33   9.4  

>tr|A0DUT3|A0DUT3_PARTE Chromosome undetermined scaffold_65, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00020462001 PE=4 SV=1
          Length = 1368

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 99  VCINMYETGGHVASCNTIC*LQCPLNKL-LRE*RCLSCKANRELPIGKINTQFSLSIFVK 275
           +CI+ Y     V  C      +CP   L   E +CLSC  +REL +GK N +       K
Sbjct: 707 ICIDGYYELDDVPQCK-----KCPFPCLNCDESQCLSCVDDRELELGKCNCRQGYQEINK 761

Query: 276 DMLPLTQHHLVCC 314
             +P+     + C
Sbjct: 762 QCVPICDSTCLTC 774