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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919699
Clone id YMU001_000128_B05
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGCTGTCATCATTAACTTTGCCAAGAGGTGTTAATCAACAAGATTCAACTGCTTCCAAG
AGTTTGGGAAGGCCTCACGTAGGTCAAAAAATATACGTAAAGAAGAATAACGCTGCACTA
TAAGAAAGCACATCATTCAACCGCGCTAATCGGCTGAAAGATTAGGGTAAAGTACTAGTT
TAAGACAAGGGGTGCACAAGAGGATTAGCCCAATGCAAGCCCATGACGAGATAAGGAGGC
TTTATGTGCTCGTTCCCATTAACGTTATGCATGTTAAGCAAGCTTGCATAAATGGTGATT
AACCTTTTGAGTAACCATATTGGGGAGAGCCACTTTATCCGCAAACGGGACACGTGTTGC
AATCTGAGCCGTCCTGCCTTGACGTGCTGGCGGAGCCTGATTGGATACCTCCTCTTCCTC
TCCTTCTGCTTCATTTGCGAACCATTTTCTTTGGACAGTCTCTCGTAAGAGAAGCTGGGG
TGGCTGCCGCCTCGACCAGGCAGCTTGTACGCTCGAGCAAGCCGCAAATGAGGCCATATC
AACTGCATGCTCGAACGCCTCGTCATGCTACAGCGTTGGTTGAGTACCTGCAGGTAATAT
CTCAAGGGCGAATTCGCGG
■■Homology search results ■■ -
sp_hit_id Q12789
Definition sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1 OS=Homo sapiens
Align length 78
Score (bit) 35.8
E-value 0.16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919699|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B05.
         (587 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptid...    36   0.16 

>sp|Q12789|TF3C1_HUMAN General transcription factor 3C polypeptide 1
            OS=Homo sapiens GN=GTF3C1 PE=1 SV=4
          Length = 2109

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 478  RGGSHPSFSYERLSKENGSQMKQKERKRRYP----IRLRQHVKAGRLRLQHVSRLRIKWL 311
            RGG   S   +RL K+ G ++K+K +K  +P     RLR H +A +  LQ ++RLR+ W 
Sbjct: 1210 RGGK--SQKRKRLKKDPGKKIKRK-KKGEFPGEKSKRLRYHDEADQSALQRMTRLRVTWS 1266

Query: 310  SPIWLLKRLITIYASLLN 257
                 L  L  I +++LN
Sbjct: 1267 MQEDGLLVLCRIASNVLN 1284
tr_hit_id A9THL1
Definition tr|A9THL1|A9THL1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 100
Score (bit) 39.3
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919699|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B05.
         (587 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9THL1|A9THL1_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|Q6AWA4|Q6AWA4_HUMAN Putative uncharacterized protein DKFZp686...    36   1.8  
tr|Q6AHZ7|Q6AHZ7_HUMAN Putative uncharacterized protein DKFZp686...    36   1.8  
tr|A8MRT3|A8MRT3_HUMAN Putative uncharacterized protein GTF3C1 O...    36   1.8  
tr|Q7CGR6|Q7CGR6_YERPE Putative virulence determinant OS=Yersini...    35   3.1  
tr|Q666M9|Q666M9_YERPS Pore forming RTX toxin family protein OS=...    35   3.1  
tr|Q1CEV9|Q1CEV9_YERPN Virulence determinant OS=Yersinia pestis ...    35   3.1  
tr|Q1CB86|Q1CB86_YERPA Putative virulence determinant OS=Yersini...    35   3.1  
tr|B2K0U5|B2K0U5_YERPB Pore forming RTX toxin family protein OS=...    35   3.1  
tr|B1JNN4|B1JNN4_YERPY Virulence determinant OS=Yersinia pseudot...    35   3.1  
tr|A9R6Q5|A9R6Q5_YERPG Putative phage minor structural protein O...    35   3.1  
tr|A4TI66|A4TI66_YERPP Virulence determinant OS=Yersinia pestis ...    35   3.1  
tr|Q74QH9|Q74QH9_YERPE Putative virulence determinant OS=Yersini...    35   3.1  
tr|B0HVU4|B0HVU4_YERPE Putative phage minor structural protein O...    35   3.1  
tr|B0HIK8|B0HIK8_YERPE Putative phage minor structural protein O...    35   3.1  
tr|B0HAJ6|B0HAJ6_YERPE Putative phage minor structural protein O...    35   3.1  
tr|B0GWU6|B0GWU6_YERPE Putative phage minor structural protein O...    35   3.1  
tr|B0GFQ3|B0GFQ3_YERPE Putative phage minor structural protein O...    35   3.1  
tr|A9ZVS8|A9ZVS8_YERPE Putative phage minor structural protein O...    35   3.1  
tr|A9Z6W4|A9Z6W4_YERPE Putative phage minor structural protein O...    35   3.1  
tr|A6BTT7|A6BTT7_YERPE Putative virulence determinant OS=Yersini...    35   3.1  
tr|Q5R9F7|Q5R9F7_PONAB Putative uncharacterized protein DKFZp469...    35   4.1  
tr|A2X669|A2X669_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.1  

>tr|A9THL1|A9THL1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170116 PE=4 SV=1
          Length = 283

 Score = 39.3 bits (90), Expect = 0.17
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
 Frame = -2

Query: 451 YERLSKENGSQMKQKE------RKRRYPIRLRQHVKAGRLRLQ---HVSRLRIKWLSPIW 299
           Y+R+  E+G   K ++      RK+R  ++  +  K+   RL+    VS+L+IK LSP+ 
Sbjct: 168 YKRVDDEDGKLTKWRKSFLSGWRKKRMALKFGRRSKSTETRLRWGFRVSKLKIKRLSPLH 227

Query: 298 LLKRLITIYASLLNM--HNVNGNEHIKPPYLVMGLHWANP 185
           LLK+L   Y +++     N+ G+         MG H+ +P
Sbjct: 228 LLKKLRDAYVNMMLSLESNMEGSTAAS-----MGPHYMDP 262


>tr|Q6AWA4|Q6AWA4_HUMAN Putative uncharacterized protein DKFZp686O0870
            (Fragment) OS=Homo sapiens GN=DKFZp686O0870 PE=2 SV=1
          Length = 2112

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 478  RGGSHPSFSYERLSKENGSQMKQKERKRRYP----IRLRQHVKAGRLRLQHVSRLRIKWL 311
            RGG   S   +RL K+ G ++K+K +K  +P     RLR H +A +  LQ ++RLR+ W 
Sbjct: 1210 RGGK--SQKRKRLKKDPGKKIKRK-KKGEFPGEKSKRLRYHDEADQSALQRMTRLRVTWS 1266

Query: 310  SPIWLLKRLITIYASLLN 257
                 L  L  I +++LN
Sbjct: 1267 MQEDGLLVLCRIASNVLN 1284


>tr|Q6AHZ7|Q6AHZ7_HUMAN Putative uncharacterized protein DKFZp686A111
            OS=Homo sapiens GN=DKFZp686A111 PE=2 SV=1
          Length = 2109

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 478  RGGSHPSFSYERLSKENGSQMKQKERKRRYP----IRLRQHVKAGRLRLQHVSRLRIKWL 311
            RGG   S   +RL K+ G ++K+K +K  +P     RLR H +A +  LQ ++RLR+ W 
Sbjct: 1210 RGGK--SQKRKRLKKDPGKKIKRK-KKGEFPGEKSKRLRYHDEADQSALQRMTRLRVTWS 1266

Query: 310  SPIWLLKRLITIYASLLN 257
                 L  L  I +++LN
Sbjct: 1267 MQEDGLLVLCRIASNVLN 1284


>tr|A8MRT3|A8MRT3_HUMAN Putative uncharacterized protein GTF3C1
            OS=Homo sapiens GN=GTF3C1 PE=4 SV=1
          Length = 1687

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
 Frame = -2

Query: 478  RGGSHPSFSYERLSKENGSQMKQKERKRRYP----IRLRQHVKAGRLRLQHVSRLRIKWL 311
            RGG   S   +RL K+ G ++K+K +K  +P     RLR H +A +  LQ ++RLR+ W 
Sbjct: 1206 RGGK--SQKRKRLKKDPGKKIKRK-KKGEFPGEKSKRLRYHDEADQSALQRMTRLRVTWS 1262

Query: 310  SPIWLLKRLITIYASLLN 257
                 L  L  I +++LN
Sbjct: 1263 MQEDGLLVLCRIASNVLN 1280


>tr|Q7CGR6|Q7CGR6_YERPE Putative virulence determinant OS=Yersinia
            pestis GN=YPO0947 PE=4 SV=1
          Length = 3110

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2937 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2989

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2990 LVLRKPIDLRQYFNQKNLTKDHVGRL 3015


>tr|Q666M9|Q666M9_YERPS Pore forming RTX toxin family protein
            OS=Yersinia pseudotuberculosis GN=YPTB3219 PE=4 SV=1
          Length = 3103

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2930 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2982

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2983 LVLRKPIDLRQYFNQKNLTKDHVGRL 3008


>tr|Q1CEV9|Q1CEV9_YERPN Virulence determinant OS=Yersinia pestis bv.
            Antiqua (strain Nepal516) GN=YPN_3144 PE=4 SV=1
          Length = 3110

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2937 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2989

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2990 LVLRKPIDLRQYFNQKNLTKDHVGRL 3015


>tr|Q1CB86|Q1CB86_YERPA Putative virulence determinant OS=Yersinia
            pestis bv. Antiqua (strain Antiqua) GN=YPA_0318 PE=4 SV=1
          Length = 3110

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2937 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2989

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2990 LVLRKPIDLRQYFNQKNLTKDHVGRL 3015


>tr|B2K0U5|B2K0U5_YERPB Pore forming RTX toxin family protein
            OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+)
            GN=YPTS_3353 PE=4 SV=1
          Length = 3110

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2937 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2989

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2990 LVLRKPIDLRQYFNQKNLTKDHVGRL 3015


>tr|B1JNN4|B1JNN4_YERPY Virulence determinant OS=Yersinia
            pseudotuberculosis serotype O:3 (strain YPIII)
            GN=YPK_0825 PE=4 SV=1
          Length = 3110

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 577  LQVLNQRCSMTRRSSMQLIWPHLRLARAYKLPGRGGSHPSFSYERLSKENGSQMKQKERK 398
            +++  Q C + R+S        + LA  Y + GRG      S  ++ KE G  + + E+ 
Sbjct: 2937 IELCQQECGINRQSL-------INLAMKYHVTGRGHFELLISNIQVLKEYGVVVSESEQP 2989

Query: 397  R--RYPIRLRQHVKAGRLRLQHVSRL 326
               R PI LRQ+     L   HV RL
Sbjct: 2990 LVLRKPIDLRQYFNQKNLTKDHVGRL 3015