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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919704
Clone id YMU001_000128_B12
Library
Length 260
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCAATATAGGCTTGAACCTGCATCCTTTTCTCGATGATAGCATCCACCAAAGGAAGAA
CATCTGTCGGGCTACCTACCCTGAGTGCCATATTTTGAACCGCGTGCAAATTGCCTTTAC
CCCTTGGTAGCCTAGTGCTAACACTAGTCGACCACACTCGCCTCAATGTAGGGTTCAATG
CCAACAATTGTCCAAAAGTAATATTAGCTCTTTGACTTTGGACATCACTCACCAAATCAT
ACTCTGGATGGCCGCGCCCA
■■Homology search results ■■ -
sp_hit_id Q8SWR8
Definition sp|Q8SWR8|ATX2_DROME Ataxin-2 homolog OS=Drosophila melanogaster
Align length 30
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919704|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B12.
         (260 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8SWR8|ATX2_DROME Ataxin-2 homolog OS=Drosophila melanogaster...    30   4.8  
sp|A0LE19|IF2_MAGSM Translation initiation factor IF-2 OS=Magnet...    29   6.3  
sp|A9NFN6|HRCA_ACHLI Heat-inducible transcription repressor hrcA...    29   8.2  
sp|Q8L3A0|HRCA_ACHLA Heat-inducible transcription repressor hrcA...    29   8.2  

>sp|Q8SWR8|ATX2_DROME Ataxin-2 homolog OS=Drosophila melanogaster
           GN=Atx2 PE=1 SV=1
          Length = 1084

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 89  HILNRVQIAFTPW*PSA-NTSRPHSPQCRV 175
           H+LN     FTP  PS  N SRPH+PQ  V
Sbjct: 857 HVLNPSAKPFTPRGPSTPNPSRPHTPQTPV 886


>sp|A0LE19|IF2_MAGSM Translation initiation factor IF-2
           OS=Magnetococcus sp. (strain MC-1) GN=infB PE=3 SV=1
          Length = 949

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -2

Query: 184 LALNPTLRRVWSTSVSTRLPRGKGNLHA--VQNMALRVG 74
           L  NPT +R   T +   L RG+G +    VQN  LRVG
Sbjct: 614 LQSNPTKKRARGTIIEANLDRGRGAVATCLVQNGTLRVG 652


>sp|A9NFN6|HRCA_ACHLI Heat-inducible transcription repressor hrcA
           OS=Acholeplasma laidlawii (strain PG-8A) GN=hrcA PE=3
           SV=1
          Length = 342

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 139 STRLPRGKGNLHAVQNMALRVGSPTDVLPLVDAIIEKR 26
           S R+P  +G  + ++++  R    T+V PL+D +  K+
Sbjct: 62  SGRVPSERGYRYYIEHLVTRDNDVTEVFPLIDEVFSKK 99


>sp|Q8L3A0|HRCA_ACHLA Heat-inducible transcription repressor hrcA
           OS=Acholeplasma laidlawii GN=hrcA PE=3 SV=1
          Length = 342

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 139 STRLPRGKGNLHAVQNMALRVGSPTDVLPLVDAIIEKR 26
           S R+P  +G  + ++++  R    T+V PL+D +  K+
Sbjct: 62  SGRVPSERGYRYYIEHLVTRDNDVTEVFPLIDEVFSKK 99
tr_hit_id A9U2P8
Definition tr|A9U2P8|A9U2P8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919704|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_B12.
         (260 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U2P8|A9U2P8_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.84 
tr|A9RNM0|A9RNM0_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|Q98KW7|Q98KW7_RHILO Probable NAD(P)H dehydrogenase OS=Rhizobi...    33   7.1  
tr|A9U6K7|A9U6K7_PHYPA Predicted protein (Fragment) OS=Physcomit...    33   7.1  
tr|A9TQT8|A9TQT8_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A9TM52|A9TM52_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A9SFK8|A9SFK8_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A9SFK5|A9SFK5_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A9T718|A9T718_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  

>tr|A9U2P8|A9U2P8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_100886 PE=4 SV=1
          Length = 645

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 15/36 (41%), Positives = 27/36 (75%)
 Frame = -2

Query: 247 PEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSV 140
           P YD+V D++ Q+AN+TF QLLA +   +++ ++S+
Sbjct: 409 PNYDVVEDLKGQKANVTFEQLLADSKPYKKLVASSL 444


>tr|A9RNM0|A9RNM0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68607 PE=4 SV=1
          Length = 704

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVW 152
           + +YDL  D++  +ANI+  QLL ++P +R+ W
Sbjct: 657 YQKYDLWRDLRRIKANISIAQLLEISPLMRKSW 689


>tr|Q98KW7|Q98KW7_RHILO Probable NAD(P)H dehydrogenase OS=Rhizobium
           loti GN=mll1286 PE=4 SV=1
          Length = 195

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 196 FGQLLALNPTLRRVWSTSVSTRLPRGKGNLHAVQNMALRVG 74
           +G    L   L RVW+T V+ +LP GKG + ++     +VG
Sbjct: 88  YGLPAMLKGWLDRVWATDVAFKLPAGKGRIKSLMTHVTKVG 128


>tr|A9U6K7|A9U6K7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_103314 PE=4 SV=1
          Length = 461

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGK 116
           + +YDL  D++  +A+I+  QLL ++P +R+    S   RLPR K
Sbjct: 409 YQKYDLWRDLRRIKADISIAQLLEISPLMRK----SFKERLPRAK 449


>tr|A9TQT8|A9TQT8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95940 PE=4 SV=1
          Length = 811

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGKGNLHAVQNMALRVGS 71
           + +YDL  D++  +A+I+  QLL ++P +R+    S    LPR K      +    RV +
Sbjct: 736 YQKYDLWRDLRRIKADISIAQLLEISPLMRK----SFKEGLPRAKRKKKTQKRTVARVQA 791

Query: 70  PTDVLPLVDAIIEKRMQVQA 11
                  +  + +K  QVQA
Sbjct: 792 S------IKPVDDKNWQVQA 805


>tr|A9TM52|A9TM52_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_94546 PE=4 SV=1
          Length = 828

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGK 116
           + +YDL  D++  +A+I+  QLL + P +R+    S   RLPR K
Sbjct: 714 YQKYDLWRDLRKIKADISIAQLLEITPLMRK----SFKERLPRAK 754


>tr|A9SFK8|A9SFK8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229324 PE=4 SV=1
          Length = 801

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGK 116
           + +YDL  D++  +A+I+  QLL ++P +R+    S   RLPR K
Sbjct: 476 YQKYDLWRDLRRIKADISIAQLLEISPLMRK----SFKERLPRAK 516


>tr|A9SFK5|A9SFK5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_78677 PE=4 SV=1
          Length = 640

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGK 116
           + +YDL  D++  +A+I+  QLL ++P +R+    S   RLPR K
Sbjct: 571 YQKYDLWRDLRRIKADISIAQLLEISPLMRK----SFKERLPRAK 611


>tr|A9T718|A9T718_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_88933 PE=4 SV=1
          Length = 664

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = -2

Query: 250 HPEYDLVSDVQSQRANITFGQLLALNPTLRRVWSTSVSTRLPRGK 116
           H +YDL  D++  +A+I+  QLL ++P +R+    S    LPR K
Sbjct: 535 HQKYDLWRDLRRIKADISIAQLLEISPLMRK----SFKEGLPRAK 575