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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919706
Clone id YMU001_000128_C02
Library
Length 458
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTTCTATCTTATATGGATAGGCCGTAACGGTGTATAATATTTTT
TTATTCTTATTCTTTGAGATTTCAAATCTATATATCCGTTTGGAAACCAATAGAACAATA
GCGAATGATTCTGGCAGACTGCAGGTCATGATAAATTGAAAGGTGACTTTTTGTATTGGG
TTTTTCATCTCTTGTATCCATAACCTTTTTTGTTTTGAAACCTCAAAAAACAAAAAAGTA
ACCTACTGTGTACACTATTCATGCAGGTCGCTACTTATGCGACACTTTGCGAAGGTTAAT
TAAACGGGCCAAACGGCCCATCTCCTTCGGAATCAAAGCTAACAACAGTCGAATTTGCGC
CTGCGTCCGCAGTTAAATTTGTGTCCACACCCGCAGTACTTGTTACTAGTTCCTGATAAG
CAGTGATCACTTCACTTACCGCCGGGATTATCCGATTC
■■Homology search results ■■ -
sp_hit_id Q67ER4
Definition sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus
Align length 26
Score (bit) 31.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919706|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_C02.
         (439 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus GN=...    31   2.0  
sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens G...    30   5.7  
sp|Q12704|DPOG_SCHPO DNA polymerase gamma OS=Schizosaccharomyces...    30   5.7  
sp|O62489|SRE26_CAEEL Serpentine receptor class epsilon-26 OS=Ca...    29   7.5  
sp|Q49WB0|CDR_STAS1 Coenzyme A disulfide reductase OS=Staphyloco...    29   7.5  
sp|Q09WW0|YCF1_MORIN Putative membrane protein ycf1 OS=Morus ind...    29   9.8  
sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens G...    29   9.8  
sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago...    29   9.8  

>sp|Q67ER4|R113A_BOVIN RING finger protein 113A OS=Bos taurus
           GN=RNF113A PE=2 SV=1
          Length = 343

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 192 CFETSKNKKVTYCVHYSCRSLLMRHF 269
           C +T +N  VT C HY C S  ++HF
Sbjct: 265 CRQTFQNPVVTKCRHYFCESCALQHF 290


>sp|O15541|R113A_HUMAN RING finger protein 113A OS=Homo sapiens
           GN=RNF113A PE=1 SV=1
          Length = 343

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 192 CFETSKNKKVTYCVHYSCRSLLMRHF 269
           C ++ +N  VT C HY C S  ++HF
Sbjct: 265 CRQSFQNPVVTKCRHYFCESCALQHF 290


>sp|Q12704|DPOG_SCHPO DNA polymerase gamma OS=Schizosaccharomyces
           pombe GN=mip1 PE=2 SV=2
          Length = 1018

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +3

Query: 162 FFISCIHNLFCFE----TSKNKKVTYCVHYSCRSLLMRHFAKVN*TG--QTAHLLRNQS* 323
           F+ +C   L C +      K KK  YC HYS +S +     ++N  G    +  L+NQ  
Sbjct: 2   FYKACPSTLTCSKWIHSIIKTKKFLYCRHYSSKSFIDNAPLRINPVGVQYLSPALQNQVF 61

Query: 324 QQSNLRLRPQLNL 362
            Q N ++  QL+L
Sbjct: 62  PQQNTQI-SQLHL 73


>sp|O62489|SRE26_CAEEL Serpentine receptor class epsilon-26
           OS=Caenorhabditis elegans GN=sre-26 PE=2 SV=1
          Length = 359

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = -1

Query: 220 TFLFFEVSKQKRLWIQEMKNPIQKVTFQFIMTCSLPESFAIVLLVSKRIY 71
           T +++ + K    W+QEM+NP +K  F       + E+   + +  + ++
Sbjct: 209 TIMYYYIRKINTKWLQEMQNPNRKRVFTVSQQFQVRENLGAIAIGKRLVF 258


>sp|Q49WB0|CDR_STAS1 Coenzyme A disulfide reductase
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=cdr PE=3 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 158 NTKSHLSIYHDLQSARIIRYCSIGFQ 81
           NTK HL +Y D  + RIIR  ++G +
Sbjct: 365 NTKLHLRVYFDKTNRRIIRAAAVGMK 390


>sp|Q09WW0|YCF1_MORIN Putative membrane protein ycf1 OS=Morus indica
            GN=ycf1 PE=3 SV=1
          Length = 1879

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -1

Query: 220  TFLFFEVSKQKRLWIQEMKNPIQKVTFQFIMTCSLPESFAIVLLVSKRIYRFEISKNKNK 41
            T LF  VSK+++ W+      I+ + F   +   L +   I+L+  + I  +E+S++K +
Sbjct: 960  TKLFLNVSKERKKWV------IKNIVFLKKIIKELSKMNPILLVGLREIELYELSESKKE 1013

Query: 40   KIL 32
            K L
Sbjct: 1014 KNL 1016


>sp|Q8IZP6|R113B_HUMAN RING finger protein 113B OS=Homo sapiens
           GN=RNF113B PE=1 SV=3
          Length = 322

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 192 CFETSKNKKVTYCVHYSCRSLLMRHF 269
           C +  +N  VT C HY C S  + HF
Sbjct: 259 CRQAFQNPVVTKCRHYFCESCALEHF 284


>sp|Q4P400|CWC24_USTMA Pre-mRNA-splicing factor CWC24 OS=Ustilago
           maydis GN=CWC24 PE=3 SV=1
          Length = 355

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 186 LFCFETSKNKKVTYCVHYSCRSLLMRHFAK 275
           L C +   +  VT C HY C S  ++ FAK
Sbjct: 265 LICRKAFTDPVVTRCAHYFCSSCAIKRFAK 294
tr_hit_id Q55E24
Definition tr|Q55E24|Q55E24_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 44
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919706|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_C02.
         (439 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q55E24|Q55E24_DICDI Putative uncharacterized protein OS=Dicty...    35   1.4  
tr|A9BK62|A9BK62_9CRYP Putative uncharacterized protein OS=Crypt...    34   4.1  
tr|A7SUV2|A7SUV2_NEMVE Predicted protein OS=Nematostella vectens...    34   4.1  
tr|B8HML4|B8HML4_9CHRO Putative uncharacterized protein OS=Cyano...    33   7.0  
tr|Q8K3S6|Q8K3S6_MOUSE BMI1-like protein (Predicted) OS=Mus musc...    33   7.1  
tr|Q5K7L3|Q5K7L3_CRYNE Putative uncharacterized protein OS=Crypt...    33   9.2  
tr|B6MGU3|B6MGU3_BRAFL Putative uncharacterized protein (Fragmen...    33   9.2  

>tr|Q55E24|Q55E24_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0201722 PE=4 SV=1
          Length = 297

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 178 IQEMKNPIQKVTFQFI--MTCSLPESFAIVLLVSKRIYRFEISK 53
           I ++ +PI    + FI  + C +P S A+VLLV K I   +ISK
Sbjct: 142 ISDLTDPIHMDLYTFIRKVNCGVPSSIAVVLLVDKEINEIDISK 185


>tr|A9BK62|A9BK62_9CRYP Putative uncharacterized protein
           OS=Cryptophyta GN=HAN_1g50 PE=4 SV=1
          Length = 828

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/96 (27%), Positives = 45/96 (46%)
 Frame = +3

Query: 33  NIFLFLFFEISNLYIRLETNRTIANDSGRLQVMIN*KVTFCIGFFISCIHNLFCFETSKN 212
           N  LF FF+ISNL+     + +I  +     +++N  +TF +       HN F  +  + 
Sbjct: 256 NRILFFFFQISNLF-----SFSIKKNYFFSSLLLN--LTFTLSKKHKKFHNFFLTKKKRK 308

Query: 213 KKVTYCVHYSCRSLLMRHFAKVN*TGQTAHLLRNQS 320
           K   Y ++  C  + +++F K   T Q   L+ N S
Sbjct: 309 KNKKYYLNI-CSRIYLKNFKKKKKTSQNWPLIENTS 343


>tr|A7SUV2|A7SUV2_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g193827 PE=4 SV=1
          Length = 321

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 186 LFCFETSKNKKVTYCVHYSCRSLLMRHFAK 275
           + C +T KN  VT C+HY C +  ++H+ K
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKK 275


>tr|B8HML4|B8HML4_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 7425 GN=Cyan7425_1250 PE=4 SV=1
          Length = 559

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -1

Query: 223 VTFLFFEVSKQKRLWIQEMKNPIQKVTFQFIMTCSLPESFAIVLLVSKRIYRFEISKNKN 44
           V+F F     Q+ +W Q +  P Q +  +F  TC LP    + L  +K I    I  +  
Sbjct: 208 VSFQFRNPRTQELVWEQSLLLPEQTLPLRFSCTCKLPMDQGVWLGEAKLILPAAIHSHLR 267

Query: 43  KKILYTVTAYP 11
           K   + VT  P
Sbjct: 268 KAQTFMVTVIP 278


>tr|Q8K3S6|Q8K3S6_MOUSE BMI1-like protein (Predicted) OS=Mus
           musculus GN=ENSMUSG00000043661 PE=2 SV=1
          Length = 194

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 219 VTYCVHYSCRSLLMRHFAKVN*TGQTAHLLRNQS*QQSNLRLRPQL 356
           +T C+H  C+S +++HF   N      +L+ +Q+    NLR+ PQL
Sbjct: 98  ITECLHSFCKSCIVKHFEHSN-RCPKCNLIVHQAKPHKNLRMDPQL 142


>tr|Q5K7L3|Q5K7L3_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBM1910 PE=4 SV=1
          Length = 499

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 399 YQELVTSTAGVDTNLTADAGANSTVVSFDSEGDGPF 292
           +  L T +A   T  T+ A A S+ VS D +GDGPF
Sbjct: 345 FTSLSTFSAPSSTTATSAAAATSSAVSADPDGDGPF 380


>tr|B6MGU3|B6MGU3_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_181904 PE=4 SV=1
          Length = 59

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 165 FISCIHNLFCFETSKNKKVTYCVHYSCRSLLMRH 266
           F+SC     CFET +  K+  CVH  C   L++H
Sbjct: 7   FLSC---QICFETFRQPKILPCVHTFCERCLLKH 37