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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919718
Clone id YMU001_000128_D02
Library
Length 319
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATCAATAGAGCTTGCTGAGATCGTCCATTGATCGAGGTCGCCATGGCTGTTGCAACCGT
TGCAACCTCCTCTCTCCACCTCGCTTGCTCCTCAAGCGCCGCGGGAGAGTCCAAGGTTCT
ATCCCGCCGTGGTCCCTGCTTGCTAGCTCCCGCTCCTGGCCGGGCTTCTCCTCTCAAGCT
CGTCTCCAATGGCAGCCGCGTCTCTATGAGTGCGGATGGAAAGAAAGAGATCAGCCTTGC
GGCACCGGCGGCCCTCGCTGTACTTGCTGCAGCAGTTATTCCAGATATGGCTGAGGCTGT
TGCTCCTGGAGTATCACCC
■■Homology search results ■■ -
sp_hit_id Q11H16
Definition sp|Q11H16|RS6_MESSB 30S ribosomal protein S6 OS=Mesorhizobium sp. (strain BNC1)
Align length 44
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919718|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D02.
         (319 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q11H16|RS6_MESSB 30S ribosomal protein S6 OS=Mesorhizobium sp...    29   6.3  
sp|Q2UUJ9|TVP38_ASPOR Golgi apparatus membrane protein tvp38 OS=...    29   8.2  
sp|A8FUW6|SYD_SHESH Aspartyl-tRNA synthetase OS=Shewanella sedim...    29   8.2  

>sp|Q11H16|RS6_MESSB 30S ribosomal protein S6 OS=Mesorhizobium sp.
           (strain BNC1) GN=rpsF PE=3 SV=1
          Length = 148

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 219 PSALIETRLPLETSLRGEARPGAGASKQGPRRDRTLDSPAALEE 88
           PSA+++ R   E   RG+  P      +GPRR R  D P    E
Sbjct: 100 PSAMLQRRDDRERGDRGDRGPRRDFDDRGPRRPREDDRPRRSRE 143


>sp|Q2UUJ9|TVP38_ASPOR Golgi apparatus membrane protein tvp38
           OS=Aspergillus oryzae GN=tvp38 PE=3 SV=2
          Length = 414

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 SIPPWSLLASSRSWPGFSSQARLQWQ 195
           S PPWS LAS RS P   S+    W+
Sbjct: 29  SYPPWSHLASGRSNPAHPSERPTLWK 54


>sp|A8FUW6|SYD_SHESH Aspartyl-tRNA synthetase OS=Shewanella
           sediminis (strain HAW-EB3) GN=aspS PE=3 SV=1
          Length = 595

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 CLLAPAPGRASPLKLVSNGSRVSMSADGKKE 229
           C L  APG A+P +LV  G  V  S D K+E
Sbjct: 563 CPLTNAPGFANPAQLVELGVNVIESEDNKEE 593
tr_hit_id A9RVW4
Definition tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 69
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919718|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D02.
         (319 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.38 
tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.84 
tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea...    36   0.84 
tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein OS=Pyrob...    35   1.9  
tr|Q8S5F5|Q8S5F5_ORYSA Putative uncharacterized protein OSJNBb00...    33   9.2  
tr|Q96VZ2|Q96VZ2_CRYNE 88 kDa immunoreactive mannoprotein (Putat...    33   9.2  
tr|Q96UH0|Q96UH0_CRYNE Macrofage activating glycoprotein OS=Cryp...    33   9.2  
tr|Q7LM46|Q7LM46_CRYNE 88 kDa immunoreactive mannoprotein MP88 O...    33   9.2  

>tr|A9RVW4|A9RVW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161232 PE=4 SV=1
          Length = 125

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 23/69 (33%), Positives = 34/69 (49%)
 Frame = +2

Query: 110 SKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSADGKKEISXXXXXXXXXXXXXXIPDM 289
           +K+ S +G  L  P  G+      +SNG+RVSMS   K+  +              +P++
Sbjct: 22  AKLPSHKGLALATPL-GKKQVSVAISNGNRVSMSLPAKENHNVMSLTGLALVAAAVVPEI 80

Query: 290 AEAVAPGVS 316
           AEA  PGVS
Sbjct: 81  AEAAQPGVS 89


>tr|A9STC1|A9STC1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166457 PE=4 SV=1
          Length = 238

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 29/71 (40%), Positives = 36/71 (50%)
 Frame = +2

Query: 107 ESKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSADGKKEISXXXXXXXXXXXXXXIPD 286
           E K LSR+G  L AP   RAS  ++V N SRV MSA    +                +P+
Sbjct: 138 EGKTLSRQGLALAAPP--RAS--RMVVNRSRVVMSAT-PSDNKVVSLTSLALLAAAVVPE 192

Query: 287 MAEAVAPGVSP 319
           +AEA  PGVSP
Sbjct: 193 IAEAAQPGVSP 203


>tr|A9TK82|A9TK82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170551 PE=4 SV=1
          Length = 126

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +2

Query: 107 ESKVLSRRGPCLLAPAPGRASPLKLVSNGSRVSMSADGKKEISXXXXXXXXXXXXXXIPD 286
           E K LSR+G  L A +P R +  ++  N SRV MSA   ++ +              +P+
Sbjct: 23  EGKTLSRQGLSLAAASPLRMAG-QVAMNRSRVVMSA-APQDKNVAGLTSLALLAAAVVPE 80

Query: 287 MAEAVAPGVSP 319
           +AEA  PG+SP
Sbjct: 81  IAEAAQPGISP 91


>tr|A9NTS2|A9NTS2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 129

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 25/60 (41%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 143 LAPAPGRASPLKLVSNGSRVSMSAD-GKKEISXXXXXXXXXXXXXXIPDMAEAVAPGVSP 319
           L   P +    KL SN SRV M A  GKKE S              IP++AEA   GVSP
Sbjct: 35  LFTTPNKLYSPKLASNRSRVVMHASQGKKEQSLAGLTSLALAAAMVIPEIAEAAGSGVSP 94


>tr|A3MVN7|A3MVN7_PYRCJ Putative uncharacterized protein
           OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1)
           GN=Pcal_1280 PE=4 SV=1
          Length = 471

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 119 LSRRG-PCLLAPAPGRASPLKLVSNGSRVSMSADGKKE 229
           L RRG  C + P PG ASPL+LV  G+ V +   G +E
Sbjct: 96  LLRRGFDCYVVPHPGIASPLRLVEEGNEVRVERGGARE 133


>tr|Q8S5F5|Q8S5F5_ORYSA Putative uncharacterized protein
           OSJNBb0047B19.9 OS=Oryza sativa GN=OSJNBb0047B19.9 PE=4
           SV=1
          Length = 214

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 142 ASSRSWPGFSSQARLQWQPR 201
           A++  WPGF+SQ R+QW+ R
Sbjct: 51  ATTEGWPGFTSQLRIQWRQR 70


>tr|Q96VZ2|Q96VZ2_CRYNE 88 kDa immunoreactive mannoprotein (Putative
           uncharacterized protein) (88 kDa immunoreactive
           mannoprotein MP88, putative) OS=Cryptococcus neoformans
           GN=CNA07540 PE=2 SV=1
          Length = 388

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = -1

Query: 280 NNCCSKYSEGRRCRKADLFLSIRTHRDAAAIGDELERRSPARSGS*QAGTTAG*NLGLSR 101
           +NC +  S G       L  +   +  AAA        S A +GS  +G+TAG + G S 
Sbjct: 272 SNCKTYTSVGNGIASLALSNAGSVNSTAAATNSSSGGASAAATGSSSSGSTAGSSAGSSA 331

Query: 100 GA*GASEVERGGCNGCNSHGDLDQWTISASS 8
           G+ G+     G     +S GD    T +A S
Sbjct: 332 GS-GSGSAAAGSTAAASSSGDSSSSTSAAMS 361


>tr|Q96UH0|Q96UH0_CRYNE Macrofage activating glycoprotein
           OS=Cryptococcus neoformans GN=mag PE=2 SV=1
          Length = 359

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = -1

Query: 280 NNCCSKYSEGRRCRKADLFLSIRTHRDAAAIGDELERRSPARSGS*QAGTTAG*NLGLSR 101
           +NC +  S G       L  +   +  AAA        S A +GS  +G+TAG + G S 
Sbjct: 243 SNCKTYTSVGNGIASLALSNAGSVNSTAAATNSSSGGASAAATGSSSSGSTAGSSAGSSA 302

Query: 100 GA*GASEVERGGCNGCNSHGDLDQWTISASS 8
           G+ G+     G     +S GD    T +A S
Sbjct: 303 GS-GSGSAAAGSTAAASSSGDSSSSTSAAMS 332


>tr|Q7LM46|Q7LM46_CRYNE 88 kDa immunoreactive mannoprotein MP88
           OS=Cryptococcus neoformans var. neoformans GN=mp88 PE=4
           SV=1
          Length = 388

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 27/91 (29%), Positives = 39/91 (42%)
 Frame = -1

Query: 280 NNCCSKYSEGRRCRKADLFLSIRTHRDAAAIGDELERRSPARSGS*QAGTTAG*NLGLSR 101
           +NC +  S G       L  +   +  AAA        S A +GS  +G+TAG + G S 
Sbjct: 272 SNCKTYTSVGNGIASLALSNAGSVNSTAAATNSSSGGASAAATGSSSSGSTAGSSAGSSA 331

Query: 100 GA*GASEVERGGCNGCNSHGDLDQWTISASS 8
           G+ G+     G     +S GD    T +A S
Sbjct: 332 GS-GSGSAAAGSTAAASSSGDSSSSTSAAMS 361