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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919726
Clone id YMU001_000128_D11
Library
Length 375
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTTGATATTTCACTTCTCCCACTCGCTTCTTTCTACGGCACTTGTAGCAGAACCAAGCAC
TAACACATGAAATGATGAATACAAACACCAGTAGATAGGCAATCACCCTTGGCTCCACCG
AAGGTAAGATAGGAGCTCTCTCATCGCTAAGGTACTCCATCGGAACTTCTATCTCACAAT
CACTAGTTACAACAATGGTTTTGTTTCCCATAGATTTTGAGTCCATCTCATAATTTGGAT
CCATCGTAAAATGAATTGTTTCACTTTTCCCTTTAGACACCGACACCTCCAGTGGGTCAG
CTATAAGAAATTCAGGAGCAATGACCTTCACTAGTACACTTGTATCTCCTTCATAAGTAA
TAAACAAAGACAGCT
■■Homology search results ■■ -
sp_hit_id Q6KF81
Definition sp|Q6KF81|PHCY2_HOMAM Pseudohemocyanin-2 (Fragment) OS=Homarus americanus
Align length 61
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919726|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D11.
         (375 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6KF81|PHCY2_HOMAM Pseudohemocyanin-2 (Fragment) OS=Homarus a...    31   1.7  
sp|Q6KF82|PHCY1_HOMAM Pseudohemocyanin-1 (Fragment) OS=Homarus a...    31   2.2  
sp|Q4V7A5|CK024_RAT Uncharacterized protein C11orf24 homolog OS=...    30   4.9  
sp|Q1RIG3|TLCD_RICBR ADP,ATP carrier protein 4 OS=Rickettsia bel...    29   6.3  
sp|Q12025|YD056_YEAST Uncharacterized protein YDR056C OS=Sacchar...    29   8.3  
sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster G...    29   8.3  

>sp|Q6KF81|PHCY2_HOMAM Pseudohemocyanin-2 (Fragment) OS=Homarus
           americanus GN=phc-2 PE=1 SV=1
          Length = 681

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +2

Query: 134 SSLIAKVLHRNFYLTITSYNNGFVSHRF*VHLIIWIHRKMNCFTFPFRHRHLQWVSYKKF 313
           S++I ++ H++F   +   NN   +    + +  W HR +N    PF       +   KF
Sbjct: 474 SAIIPRLRHKDFSFKVNIMNNNDENKLSTIRIFAWPHRDVNGVIMPFNEGRWHAIELDKF 533

Query: 314 R 316
           +
Sbjct: 534 Q 534


>sp|Q6KF82|PHCY1_HOMAM Pseudohemocyanin-1 (Fragment) OS=Homarus
           americanus GN=phc-1 PE=1 SV=1
          Length = 684

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = +2

Query: 134 SSLIAKVLHRNFYLTITSYNNGFVSHRF*VHLIIWIHRKMNCFTFPFRHRHLQWVSYKKF 313
           S++I ++ H++F   +   NN   +    + +  W HR +N    PF       +   KF
Sbjct: 476 SAIIPRLRHKDFSFKVNIMNNNDENKLATIRIFAWPHRDVNGVIMPFNEGRWHAIELDKF 535


>sp|Q4V7A5|CK024_RAT Uncharacterized protein C11orf24 homolog
           OS=Rattus norvegicus PE=2 SV=1
          Length = 477

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -3

Query: 220 SKSMGNKTIVVTSDCEIEVPMEYLSDERAPILPSVEPR--VIAYLLVFVFIISCVSAWF- 50
           S+S G+  +  T+ C++    +YL     P+ PS+  +  ++  L+V V +   V   F 
Sbjct: 390 SRSSGDVKVPTTASCQLSTQGQYLVVTTDPLTPSLVNKMFLLVVLIVGVTLFIAVLMMFA 449

Query: 49  --CYKCRRKKRVGEVKY 5
              Y+  +KK   +V Y
Sbjct: 450 LQAYESYKKKDYTQVDY 466


>sp|Q1RIG3|TLCD_RICBR ADP,ATP carrier protein 4 OS=Rickettsia bellii
           (strain RML369-C) GN=tlcD PE=3 SV=1
          Length = 520

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 130 ILPSVEPRVIAYLLVFVFIISCVSAWFCYKCRRKKRVGEVKY 5
           ILPS   + I+  L+F+FII+C+  ++  K   K+    VK+
Sbjct: 477 ILPSASYQSISVCLMFIFIITCLIWFWAVKELNKEYKKSVKF 518


>sp|Q12025|YD056_YEAST Uncharacterized protein YDR056C
           OS=Saccharomyces cerevisiae GN=YDR056C PE=1 SV=1
          Length = 205

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 331 VKVIAPEFLIADPLEVSVSKGKSETIHFTMDPNYEMDSKSMGNKTIVVTSDCEIEVPMEY 152
           V ++A     AD L++S S    + I       +E+DS S GN T+   +  ++EV  EY
Sbjct: 8   VILLASMVFCADILQLSYSDDAKDAIPLG---TFEIDSTSDGNVTVTTVNIQDVEVSGEY 64


>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster
           GN=Shroom PE=2 SV=1
          Length = 693

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
 Frame = -3

Query: 361 ITYEGDTSVLVKVIAPEFLIADPLEVSVSKGKSETIHFTMDPN--YEMDSKSMGNKTIV- 191
           + YE  +  LVK++ P   IAD L   + K  S+ +    +P+    +  + +G  T++ 
Sbjct: 427 LDYEQMSRELVKLLPPGDKIADILTPKICKPTSQYVSNLYNPDVPLRLAKRDVGTSTLMR 486

Query: 190 ---VTSDCEIEVPMEYLSDERAPILPSVEP 110
              +TS  EI V    +S E     PS EP
Sbjct: 487 MKSITSSAEIRV----VSVELQLAEPSEEP 512
tr_hit_id A9NVM1
Definition tr|A9NVM1|A9NVM1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 135
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919726|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_D11.
         (375 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NVM1|A9NVM1_PICSI Putative uncharacterized protein OS=Picea...    47   4e-04
tr|B3T1G9|B3T1G9_9ZZZZ Putative uncharacterized protein OS=uncul...    33   7.0  
tr|Q7RL53|Q7RL53_PLAYO Putative bir1 protein (Fragment) OS=Plasm...    33   7.0  

>tr|A9NVM1|A9NVM1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 486

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
 Frame = -3

Query: 373 LSLFITYEGDTSVLVKVIAPEFLIADPLEVSVSKGKSETIHFTMDPNYEMDSKSMGNKTI 194
           LSL I  +GD  + VK+ A   L  DPLE+++ K K +T+        + D +++    I
Sbjct: 285 LSLLIQNKGDDVLHVKIKASASLNVDPLELTLEKQKRKTVKVLF---VDHDIENVDLPKI 341

Query: 193 VV---TSDCEIEVPME--YLSDERA-----PILPSVEPRVIAYLLVFVFIISCVSAWFCY 44
           V+     +C ++VP +  +  D+R+          + P    YLLVF  +++    W C 
Sbjct: 342 VIDAGNGECMLDVPNQPPHSPDKRSFFEGFSYSAIITPIFGVYLLVFT-VLAIGGTWMCC 400

Query: 43  KCRRKKRVGE-VKYQ 2
           K R ++R G+ ++YQ
Sbjct: 401 KFRGRRRHGDSIRYQ 415


>tr|B3T1G9|B3T1G9_9ZZZZ Putative uncharacterized protein
           OS=uncultured marine microorganism HF4000_009L19
           GN=ALOHA_HF4000009L19ctg2g3 PE=4 SV=1
          Length = 342

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 36  RHL*QNQALTHEMMNTNTSR*AIT----LGSTEGKIGALSSLRYSIGTSISQSLVTTMVL 203
           R L    ALT E   T  +R A T    + S  GKIGA ++  + IGT++  S  T++++
Sbjct: 63  RRLGDRAALTEEEAATAEARAAETQTALVESIGGKIGAYNAFWFDIGTNVVSSRQTSLIV 122

Query: 204 FPID 215
            P D
Sbjct: 123 DPPD 126


>tr|Q7RL53|Q7RL53_PLAYO Putative bir1 protein (Fragment)
           OS=Plasmodium yoelii yoelii GN=PY02693 PE=4 SV=1
          Length = 322

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
 Frame = -3

Query: 355 YEGDTSVLVKVIA--PEFLIADPLEVSVSKGKSETIHFTMDPNYEMDSKSMGNKTIVVTS 182
           Y  +TS +  +I   PE +     ++++S  +++T+     P+   D+K   ++T V+ S
Sbjct: 212 YIKNTSNVESIIKQFPELITEKKTQITLSSDEAKTVSSNGMPSPSSDTKVSDSETEVLHS 271

Query: 181 DCEIEVPMEYLSDERAPILPSVEPRVIAYLLVFVFIISCVSAWFCYKCRRKK 26
           + E+       + E A  +P V  ++I   + F+F+++ +     YK   K+
Sbjct: 272 ENELS------NSETAQSIPLVINKLIP--IPFIFVVTLILLGIVYKVNNKE 315