BP919737 |
Clone id |
YMU001_000128_E10 |
Library |
YMU01 |
Length |
518 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000128_E10. |
Accession |
BP919737 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1419Contig1 |
Sequence |
CGCAAGGTTCTGGGTTTGCCAGAGCCTCCGCCCATGGGGGCAATGCCAGTGGGAGGCATG GCAGCAGATTGGCAAGAAGGTGGCGGCGACGCAGCTGGAGCCCCTGCAGAGGAGAAGGCA CCTGAGAAGACTAGTTTTAGTGTTAAGCTTGAGAAATTCGAGGCTGCCTCCAAGATCAAG GTCATCAAGGAGGTGCGGGCAGTCACTAATCTAGGTCTTAAGGAAGCCAAGGAGTTTGTT GAAAAAGCTCCTGGCGTTGTTAAGTCTGGATTGACGAAAGAGGAGGCTGCCCAACTTATG GAGAAGCTTAAAGCTGTGGGTGCGACTGTGGTGATGGAGTAGTTGCAGCTTTTCACATGA ATCTCATGCTTTTCTTGTTGTAGCTCTGGCTTTTCAGTATGTCTGTTTTCAGCAAGGACT CAACAGGGGTATGCGACGTGTGATGTGTGTTATGTGGAAAACAGGAAGAGTATACAGTTT GTGTCCGGAGGCCCCATTTGAGGCTTGGGGGCTCTGGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41189 |
Definition |
sp|P41189|RL7_LIBAF 50S ribosomal protein L7/L12 OS=Liberibacter africanus |
Align length |
69 |
Score (bit) |
84.7 |
E-value |
2.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5X2V5 |
Definition |
tr|A5X2V5|A5X2V5_PTEVI Ribosomal protein (Fragment) OS=Pteris vittata |
Align length |
113 |
Score (bit) |
121.0 |
E-value |
2.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919737|Adiantum capillus-veneris mRNA, clone: YMU001_000128_E10. (518 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5X2V5|A5X2V5_PTEVI Ribosomal protein (Fragment) OS=Pteris vi... 121 2e-26 tr|Q9SZF8|Q9SZF8_ARATH Ribosomal-like protein (AT4g37660/F19F18_... 105 1e-21 tr|A9TYT7|A9TYT7_PHYPA Predicted protein OS=Physcomitrella paten... 104 2e-21 tr|A9S410|A9S410_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 7e-21 tr|A9TKW0|A9TKW0_PHYPA Predicted protein (Fragment) OS=Physcomit... 102 9e-21 tr|Q3HVP5|Q3HVP5_SOLTU Putative uncharacterized protein OS=Solan... 100 3e-20 tr|Q8LI41|Q8LI41_ORYSJ Os07g0626100 protein OS=Oryza sativa subs... 100 6e-20 tr|A2YNW2|A2YNW2_ORYSI Putative uncharacterized protein OS=Oryza... 99 1e-19 tr|A7PCZ5|A7PCZ5_VITVI Chromosome chr17 scaffold_12, whole genom... 99 2e-19 tr|A7P2P4|A7P2P4_VITVI Chromosome chr1 scaffold_5, whole genome ... 97 4e-19 tr|A7QZB4|A7QZB4_VITVI Chromosome chr7 scaffold_270, whole genom... 97 6e-19 tr|A5C502|A5C502_VITVI Putative uncharacterized protein OS=Vitis... 97 6e-19 tr|Q6I629|Q6I629_ORYSJ Os05g0554100 protein OS=Oryza sativa subs... 95 2e-18 tr|B6TIJ5|B6TIJ5_MAIZE 50S ribosomal protein L12-2 OS=Zea mays P... 95 2e-18 tr|B6T4E0|B6T4E0_MAIZE 50S ribosomal protein L12-2 OS=Zea mays P... 95 2e-18 tr|A2Y795|A2Y795_ORYSI Putative uncharacterized protein OS=Oryza... 95 2e-18 tr|Q9M7T1|Q9M7T1_ARATH Putative uncharacterized protein F24F17.2... 94 4e-18 tr|Q6AVT7|Q6AVT7_ORYSJ Os03g0734400 protein OS=Oryza sativa subs... 94 4e-18 tr|A3AMF2|A3AMF2_ORYSJ Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|A2XLR1|A2XLR1_ORYSI Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|B4FHV0|B4FHV0_MAIZE Putative uncharacterized protein OS=Zea m... 94 5e-18 tr|B4G1F2|B4G1F2_MAIZE 39S ribosomal protein L12 OS=Zea mays PE=... 93 7e-18 tr|B6SHR0|B6SHR0_MAIZE 50S ribosomal protein L12-2 OS=Zea mays P... 93 9e-18 tr|Q6H730|Q6H730_ORYSJ Os02g0198900 protein OS=Oryza sativa subs... 92 1e-17 tr|A2X232|A2X232_ORYSI Putative uncharacterized protein OS=Oryza... 92 1e-17 tr|O04527|O04527_ARATH F20P5.9 protein (Putative uncharacterized... 92 2e-17 tr|B6TP18|B6TP18_MAIZE 50S ribosomal protein L12-2 OS=Zea mays P... 92 2e-17 tr|B6SHT7|B6SHT7_MAIZE 50S ribosomal protein L12-2 OS=Zea mays P... 92 2e-17 tr|O23238|O23238_ARATH Ribosomal protein (At4g36420/C7A10_940) O... 91 3e-17 tr|B4FBL2|B4FBL2_MAIZE Putative uncharacterized protein OS=Zea m... 91 3e-17
>tr|A5X2V5|A5X2V5_PTEVI Ribosomal protein (Fragment) OS=Pteris vittata PE=2 SV=1 Length = 216
Score = 121 bits (303), Expect = 2e-26 Identities = 68/113 (60%), Positives = 75/113 (66%) Frame = +1
Query: 1 RKVLGLXXXXXXXXXXXXXXXXDWQXXXXXXXXXXXXXXXXXXTSFSVKLEKFEAASKIK 180 RKVLGL DWQ TSFSVK+EKFEAASKIK Sbjct: 104 RKVLGLPEPPPMGAMPMGGMAADWQEGGGDAGPAPAEEKAPEKTSFSVKIEKFEAASKIK 163
Query: 181 VIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKLKAVGATVVME 339 VIKEVRA ++LGLKEAKEFVEK P V+KSGLTKEEA+QL++KLKAVGAT VME Sbjct: 164 VIKEVRAASDLGLKEAKEFVEKVPAVLKSGLTKEEASQLIDKLKAVGATAVME 216
>tr|Q9SZF8|Q9SZF8_ARATH Ribosomal-like protein (AT4g37660/F19F18_150) OS=Arabidopsis thaliana GN=F19F18.150 PE=2 SV=1 Length = 167
Score = 105 bits (262), Expect = 1e-21 Identities = 54/70 (77%), Positives = 62/70 (88%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T+F VKLEKFEAASKIKVIKE+RA T+LGLKEAK VEKAP +VK+GLTKEEA ++MEKL Sbjct: 98 TTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKL 157
Query: 310 KAVGATVVME 339 KAVGA V +E Sbjct: 158 KAVGAIVALE 167
>tr|A9TYT7|A9TYT7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226758 PE=4 SV=1 Length = 195
Score = 104 bits (260), Expect = 2e-21 Identities = 54/70 (77%), Positives = 63/70 (90%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 TSF VKLEKF+AASKIK+IKEVR T LGLKEAKE VEKAP V+K+G++KEEA Q++EKL Sbjct: 126 TSFDVKLEKFDAASKIKIIKEVRTFTALGLKEAKELVEKAPIVLKAGVSKEEADQIIEKL 185
Query: 310 KAVGATVVME 339 K+VGATVVME Sbjct: 186 KSVGATVVME 195
>tr|A9S410|A9S410_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18929 PE=4 SV=1 Length = 139
Score = 103 bits (256), Expect = 7e-21 Identities = 53/70 (75%), Positives = 61/70 (87%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 TSF VKL+KF+AASKIK+IKEVR T LGLKEAKE VEKAP V+KSG++KEEA Q++EKL Sbjct: 70 TSFDVKLDKFDAASKIKIIKEVRTFTALGLKEAKELVEKAPIVLKSGVSKEEAEQIIEKL 129
Query: 310 KAVGATVVME 339 K VGATV ME Sbjct: 130 KTVGATVTME 139
>tr|A9TKW0|A9TKW0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_48350 PE=4 SV=1 Length = 150
Score = 102 bits (255), Expect = 9e-21 Identities = 52/70 (74%), Positives = 61/70 (87%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T+F VKLEKF+A SKIK+IKEVR TNLGLKEAKE VEKAP V+KSG+ KEEA Q++EKL Sbjct: 81 TAFDVKLEKFDAGSKIKIIKEVRTFTNLGLKEAKELVEKAPIVLKSGVGKEEAEQIVEKL 140
Query: 310 KAVGATVVME 339 K+VGAT +ME Sbjct: 141 KSVGATALME 150
>tr|Q3HVP5|Q3HVP5_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 194
Score = 100 bits (250), Expect = 3e-20 Identities = 49/70 (70%), Positives = 61/70 (87%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T+F VKLEKF+AA+KIKVIKEVR+ T+LGLKEAKE VEKAP ++K G+TKEEA +++EK+ Sbjct: 125 TAFDVKLEKFDAAAKIKVIKEVRSFTSLGLKEAKELVEKAPAILKQGVTKEEANEIIEKI 184
Query: 310 KAVGATVVME 339 KAVG VME Sbjct: 185 KAVGGVAVME 194
>tr|Q8LI41|Q8LI41_ORYSJ Os07g0626100 protein OS=Oryza sativa subsp. japonica GN=OJ1339_F05.119 PE=2 SV=1 Length = 167
Score = 100 bits (248), Expect = 6e-20 Identities = 52/70 (74%), Positives = 59/70 (84%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 TSF VK+EK+EAA+KIK+IKEVRAVT+LGLKEAKE VEKAP VV+SGL KEEA L KL Sbjct: 98 TSFDVKIEKYEAAAKIKIIKEVRAVTDLGLKEAKELVEKAPVVVRSGLPKEEAEALAAKL 157
Query: 310 KAVGATVVME 339 KA GA V +E Sbjct: 158 KAAGAAVALE 167
>tr|A2YNW2|A2YNW2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26940 PE=4 SV=1 Length = 167
Score = 99.0 bits (245), Expect = 1e-19 Identities = 51/70 (72%), Positives = 59/70 (84%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T+F VK+EK+EAA+KIK+IKEVRAVT+LGLKEAKE VEKAP VV+SGL KEEA L KL Sbjct: 98 TAFDVKIEKYEAAAKIKIIKEVRAVTDLGLKEAKELVEKAPVVVRSGLPKEEAEALAAKL 157
Query: 310 KAVGATVVME 339 KA GA V +E Sbjct: 158 KAAGAAVALE 167
>tr|A7PCZ5|A7PCZ5_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016074001 PE=4 SV=1 Length = 189
Score = 98.6 bits (244), Expect = 2e-19 Identities = 49/70 (70%), Positives = 58/70 (82%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T+F VKLEKFEAA+KIKVIKEVRA T+LGLKEAK+ VEK P V+K G+TKEEA ++EK+ Sbjct: 120 TAFDVKLEKFEAAAKIKVIKEVRAFTSLGLKEAKDLVEKVPVVIKQGITKEEANDIIEKI 179
Query: 310 KAVGATVVME 339 KA G VME Sbjct: 180 KAAGGVAVME 189
>tr|A7P2P4|A7P2P4_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence (Chromosome undetermined scaffold_1178, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00008009001 PE=4 SV=1 Length = 206
Score = 97.4 bits (241), Expect = 4e-19 Identities = 48/70 (68%), Positives = 61/70 (87%) Frame = +1
Query: 130 TSFSVKLEKFEAASKIKVIKEVRAVTNLGLKEAKEFVEKAPGVVKSGLTKEEAAQLMEKL 309 T F +KLE +EAASKIK+IKEVR+ T+LGLKEAK+ VEKAP V+K+G++KEE QL+EKL Sbjct: 137 TVFELKLESYEAASKIKIIKEVRSFTDLGLKEAKDLVEKAPSVLKAGVSKEEGEQLVEKL 196
Query: 310 KAVGATVVME 339 KA+GA VV+E Sbjct: 197 KALGAKVVLE 206
|