NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919759
Clone id YMU001_000128_G09
Library
Length 271
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACGGCTAGAAATTTTTGAATTAATGACGTCTTACATCATCTAGATTAAGAAAGACGAAC
TGTAGAACTACCATGTATAAGTGGAGAGAGACAGAGCTAACCAAAGGCTTTCATTTGATC
TAGCTGGGTCCTCCCCTCTTGACAAATTTTCCCCTAACCTGGCCAACACCAGTTCCGGAG
AGACTGTCTGCAAGAAGAGATTGTGTGTCTGGCCTCCACTTCAGTTCCTTGAGGGTGGAG
AACGTAAGTGCTAAGGCCGGACTAATTTCCG
■■Homology search results ■■ -
sp_hit_id Q8VYT5
Definition sp|Q8VYT5|FB254_ARATH F-box protein At5g07670 OS=Arabidopsis thaliana
Align length 45
Score (bit) 59.3
E-value 6.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919759|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_G09.
         (271 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VYT5|FB254_ARATH F-box protein At5g07670 OS=Arabidopsis tha...    59   6e-09
sp|Q9FGN3|FB290_ARATH F-box protein At5g51380 OS=Arabidopsis tha...    55   8e-08
sp|Q9FGN4|FB289_ARATH F-box protein At5g51370 OS=Arabidopsis tha...    55   1e-07
sp|Q9V7H4|TM131_DROME Transmembrane protein 131 homolog OS=Droso...    30   4.9  
sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase...    30   4.9  
sp|Q53HV7|SMUG1_HUMAN Single-strand selective monofunctional ura...    29   6.4  
sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Mu...    29   6.4  
sp|Q3SVK5|MDH_NITWN Malate dehydrogenase OS=Nitrobacter winograd...    29   8.4  
sp|Q1QQR2|MDH_NITHX Malate dehydrogenase OS=Nitrobacter hamburge...    29   8.4  

>sp|Q8VYT5|FB254_ARATH F-box protein At5g07670 OS=Arabidopsis
           thaliana GN=At5g07670 PE=2 SV=1
          Length = 476

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 26/45 (57%), Positives = 36/45 (80%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           E+SP+L+  FS L EL+WRPDT+S L+ SL+GTG+G+  GKF K+
Sbjct: 431 EVSPSLSALFSALVELQWRPDTRSHLSSSLTGTGIGEKGGKFFKK 475


>sp|Q9FGN3|FB290_ARATH F-box protein At5g51380 OS=Arabidopsis
           thaliana GN=At5g51380 PE=2 SV=1
          Length = 479

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           EIS AL+  FS LKEL WRPDT+S L+ SL GTG+G+   KF K+
Sbjct: 434 EISAALSSLFSLLKELTWRPDTRSHLSSSLEGTGIGKRGSKFFKK 478


>sp|Q9FGN4|FB289_ARATH F-box protein At5g51370 OS=Arabidopsis
           thaliana GN=At5g51370 PE=2 SV=1
          Length = 446

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/45 (60%), Positives = 32/45 (71%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           EISPAL+  FS LKEL WRPDT+S L+ SL G G+G    KF K+
Sbjct: 398 EISPALSSLFSLLKELTWRPDTRSHLSSSLEGAGIGIRGSKFFKK 442


>sp|Q9V7H4|TM131_DROME Transmembrane protein 131 homolog OS=Drosophila
            melanogaster GN=CG8370 PE=1 SV=2
          Length = 1567

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 247  LRSPPSRN*SGGQTHNLFLQTVSPELV----LARLGENLSRGEDPARSNESLW 101
            +R PP    S  QTHNL  + VS         A  GE+L    DP  S  S+W
Sbjct: 1498 MRPPPGLEQSARQTHNLAQEQVSAGPASGTGAALHGESLPTQYDPFTSPSSIW 1550


>sp|Q6UB35|C1TM_HUMAN Monofunctional C1-tetrahydrofolate synthase,
           mitochondrial OS=Homo sapiens GN=MTHFD1L PE=1 SV=1
          Length = 978

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
 Frame = +1

Query: 67  TTMYKWRETELTKGFH---LI*LGPPLLTNFPLTWPTPVPERLSARRDCVSG-------- 213
           T   +W+  +L    H   ++ LG P     PLTW  P    L+   D +SG        
Sbjct: 247 TMSIQWKTRQLQSKLHEADIVVLGSPKPEEIPLTWIQPGTTVLNCSHDFLSGKVGCGSPR 306

Query: 214 LHFSSLRVEN 243
           +HF  L  E+
Sbjct: 307 IHFGGLIEED 316


>sp|Q53HV7|SMUG1_HUMAN Single-strand selective monofunctional uracil
           DNA glycosylase OS=Homo sapiens GN=SMUG1 PE=1 SV=2
          Length = 270

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 205 HNLFLQTVSPELVLARLGENLSRGEDPARSNESL 104
           H+ F+  + P L LA  G NL+  E PA+  E L
Sbjct: 157 HHCFVHNLCPLLFLAPSGRNLTPAELPAKQREQL 190


>sp|Q62635|MUC2_RAT Mucin-2 (Fragment) OS=Rattus norvegicus GN=Muc2
           PE=1 SV=1
          Length = 1513

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 147 ICQEGRTQLDQMKAFG*LCLSPLI 76
           IC+ GR Q  Q+K  G  CLSP I
Sbjct: 738 ICRNGRLQCTQVKLIGHTCLSPQI 761


>sp|Q3SVK5|MDH_NITWN Malate dehydrogenase OS=Nitrobacter
           winogradskyi (strain Nb-255 / ATCC 25391) GN=mdh PE=3
           SV=1
          Length = 322

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  DRANQRLSFDLAGSSPLDKFSPNLANTSSGETVCKKRLCV 209
           D   Q  S D+A SSP++ F   LA T+S E +    +C+
Sbjct: 37  DGVPQGKSLDIAQSSPVEGFDARLAGTNSYEALEGAGVCI 76


>sp|Q1QQR2|MDH_NITHX Malate dehydrogenase OS=Nitrobacter
           hamburgensis (strain X14 / DSM 10229) GN=mdh PE=3 SV=1
          Length = 322

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 102 QRLSFDLAGSSPLDKFSPNLANTSSGETVCKKRLCV 209
           Q  S D+A SSP+D F   L   +S E +   R+C+
Sbjct: 41  QGKSLDIAQSSPVDGFDAKLTGANSYEALEGARVCI 76
tr_hit_id A7PKI1
Definition tr|A7PKI1|A7PKI1_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera
Align length 45
Score (bit) 62.4
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919759|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_G09.
         (271 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PKI1|A7PKI1_VITVI Chromosome chr15 scaffold_19, whole genom...    62   1e-08
tr|A9SHG4|A9SHG4_PHYPA Predicted protein OS=Physcomitrella paten...    60   7e-08
tr|B6U0T1|B6U0T1_MAIZE Leucine Rich Repeat family protein OS=Zea...    57   5e-07
tr|A3A9T4|A3A9T4_ORYSJ Putative uncharacterized protein OS=Oryza...    55   1e-06
tr|A9S999|A9S999_PHYPA Predicted protein OS=Physcomitrella paten...    55   2e-06
tr|A7QUZ0|A7QUZ0_VITVI Chromosome chr16 scaffold_182, whole geno...    55   2e-06
tr|A5B0B9|A5B0B9_VITVI Putative uncharacterized protein OS=Vitis...    54   4e-06
tr|A5B8J2|A5B8J2_VITVI Putative uncharacterized protein OS=Vitis...    54   5e-06
tr|B2AV01|B2AV01_PODAN Predicted CDS Pa_7_4540 OS=Podospora anse...    33   5.4  

>tr|A7PKI1|A7PKI1_VITVI Chromosome chr15 scaffold_19, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019186001
           PE=4 SV=1
          Length = 473

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/45 (64%), Positives = 36/45 (80%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           E++PALA  FS LKELKWRPD++SLL+ SL  TG+G+  GKF KR
Sbjct: 428 EVTPALATLFSVLKELKWRPDSRSLLSSSLGETGMGKKGGKFFKR 472


>tr|A9SHG4|A9SHG4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129827 PE=4 SV=1
          Length = 441

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           E+SPAL   F TLKE  WRPDT+S+LA  L+GTGVGQ  G+F K+
Sbjct: 396 ELSPALCDRFLTLKEFSWRPDTKSVLAAGLAGTGVGQKGGRFFKK 440


>tr|B6U0T1|B6U0T1_MAIZE Leucine Rich Repeat family protein OS=Zea
           mays PE=2 SV=1
          Length = 502

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 29/45 (64%), Positives = 33/45 (73%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           EI+P LA  FS LKELKWRPD +SLLA SL GTG+G+    F KR
Sbjct: 436 EITPTLAELFSNLKELKWRPDNKSLLAASLVGTGMGKKGRVFFKR 480


>tr|A3A9T4|A3A9T4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007556 PE=4 SV=1
          Length = 1227

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           EISPAL+  FST KELKWRPD +S LA SL+GTG+G+      KR
Sbjct: 462 EISPALSELFSTFKELKWRPDNKSRLAASLAGTGMGKKGRVLCKR 506


>tr|A9S999|A9S999_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_126116 PE=4 SV=1
          Length = 441

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           E+SPAL   F TLKE  WRPDT+S+L   L+GTGVG+  G+F ++
Sbjct: 396 ELSPALCDRFLTLKEFSWRPDTKSVLNAGLAGTGVGRKGGRFFRK 440


>tr|A7QUZ0|A7QUZ0_VITVI Chromosome chr16 scaffold_182, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00007073001
           PE=4 SV=1
          Length = 478

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKFVKR 135
           E+SPAL+  FS LKEL+WRPDT+SLL+ SL  +G+G+   KF ++
Sbjct: 433 EVSPALSTLFSILKELQWRPDTRSLLSSSLVESGMGKRGSKFFRK 477


>tr|A5B0B9|A5B0B9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010819 PE=4 SV=1
          Length = 376

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQ 159
           E++PALA  FS LKELKWRPD++SLL+ SL  TG+G+
Sbjct: 310 EVTPALATLFSVLKELKWRPDSRSLLSSSLGETGMGK 346


>tr|A5B8J2|A5B8J2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040234 PE=4 SV=1
          Length = 485

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 25/42 (59%), Positives = 33/42 (78%)
 Frame = -3

Query: 269 EISPALALTFSTLKELKWRPDTQSLLADSLSGTGVGQVRGKF 144
           E+SPAL+  FS LKEL+WRPDT+SLL+ SL  +G+G+   KF
Sbjct: 433 EVSPALSTLFSILKELQWRPDTRSLLSSSLVESGMGKRGSKF 474


>tr|B2AV01|B2AV01_PODAN Predicted CDS Pa_7_4540 OS=Podospora
           anserina PE=4 SV=1
          Length = 760

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 139 LTNFPLTWPTPVPERLSARRDCVSGLHFSSLRVENVSAKAGL 264
           L   PL  P P+P++ S R+  ++GLH   LR+  V+A  GL
Sbjct: 714 LNQLPLPQPPPLPKKSSRRK--LAGLHPRPLRIRKVAATVGL 753