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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919763
Clone id YMU001_000128_H04
Library
Length 291
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAAGAGACCATATGCATCGATTATTAGGGGGAGCCACCCCAAACAACAACAGACCATAGA
TTTGGGCTTTACAAGGAGCCCATACCCAATACAATAGGACATGCGACATCAAATACATCC
AAAAAACACTTGGCTAGTAAGGGAGCCACCCTGCATATCAATCAAGAGAAGCAAAAGGCA
AGCTAACCTCGGCTACCACAGAAGCATCTCCATCTGCAAGCACCTCCTTTGAAGGAAAAC
CGCCAATAATGTTGCAAAATGGGCGCGGCTCGAGGTCCCCACATCGGCTTG
■■Homology search results ■■ -
sp_hit_id O41801
Definition sp|O41801|TAT_HV19N Protein Tat OS=Human immunodeficiency virus type 1 (isolate 92NG083 group M subtype G)
Align length 39
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919763|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H04.
         (291 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O41801|TAT_HV19N Protein Tat OS=Human immunodeficiency virus ...    31   2.2  
sp|O89943|TAT_HV1SE Protein Tat OS=Human immunodeficiency virus ...    30   4.8  
sp|O12161|TAT_HV192 Protein Tat OS=Human immunodeficiency virus ...    30   4.8  

>sp|O41801|TAT_HV19N Protein Tat OS=Human immunodeficiency virus
           type 1 (isolate 92NG083 group M subtype G) PE=3 SV=1
          Length = 101

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHAT-SNTSKKHLASKGAT 150
           PQ + DH+  + K+P+P T G+ T S   KK +ASK  T
Sbjct: 59  PQGSKDHQNPVPKQPLPITSGNPTGSEKPKKEVASKTET 97


>sp|O89943|TAT_HV1SE Protein Tat OS=Human immunodeficiency virus
           type 1 (isolate SE6165 group M subtype G) PE=3 SV=1
          Length = 101

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASK 141
           PQ++  H+  + K+P+P T G+ T    SKK +ASK
Sbjct: 59  PQSSKGHQDPVPKQPLPTTRGNPTGPKESKKEVASK 94


>sp|O12161|TAT_HV192 Protein Tat OS=Human immunodeficiency virus
           type 1 (isolate 92BR025 group M subtype C) GN=tat PE=3
           SV=1
          Length = 101

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHAT-SNTSKKHLASKGAT 150
           P ++ DH+  + K+P+P T G  T S  SKK + SK  T
Sbjct: 59  PPSSEDHQNPIPKQPLPQTRGDQTGSEESKKKVESKTET 97
tr_hit_id Q1M0J4
Definition tr|Q1M0J4|Q1M0J4_9HIV1 Protein Tat OS=Human immunodeficiency virus 1
Align length 40
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919763|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H04.
         (291 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1M0J4|Q1M0J4_9HIV1 Protein Tat OS=Human immunodeficiency vir...    36   0.84 
tr|Q9IW40|Q9IW40_9HIV1 Protein Tat OS=Human immunodeficiency vir...    35   1.9  
tr|B2YFV1|B2YFV1_9HIV1 Tat protein (Fragment) OS=Human immunodef...    35   1.9  
tr|Q6X6W5|Q6X6W5_9HIV1 Protein Tat OS=Human immunodeficiency vir...    35   2.4  
tr|Q50D73|Q50D73_9HIV1 Protein Tat OS=Human immunodeficiency vir...    35   2.4  
tr|Q0PM95|Q0PM95_9HIV1 Protein Tat OS=Human immunodeficiency vir...    35   2.4  
tr|B6D267|B6D267_9HIV1 Tat protein OS=Human immunodeficiency vir...    35   2.4  
tr|Q2KMR6|Q2KMR6_9HIV1 Protein Tat OS=Human immunodeficiency vir...    34   3.2  
tr|Q1M0K9|Q1M0K9_9HIV1 Protein Tat OS=Human immunodeficiency vir...    34   3.2  
tr|Q1KW79|Q1KW79_9HIV1 Protein Tat OS=Human immunodeficiency vir...    34   3.2  
tr|A1KY53|A1KY53_9HIV1 Protein Tat OS=Human immunodeficiency vir...    34   3.2  
tr|Q998H4|Q998H4_9HIV1 Protein Tat OS=Human immunodeficiency vir...    34   4.1  
tr|Q9IV15|Q9IV15_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPQ8|Q8UPQ8_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPQ0|Q8UPQ0_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPP1|Q8UPP1_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPN3|Q8UPN3_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPM4|Q8UPM4_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UPL5|Q8UPL5_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q8UNK4|Q8UNK4_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q596Q0|Q596Q0_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q49IF9|Q49IF9_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|A8TV16|A8TV16_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|A8TUX8|A8TUX8_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|A8TUK3|A8TUK3_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   5.4  
tr|Q7ZBG2|Q7ZBG2_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   7.1  
tr|Q71AX9|Q71AX9_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   7.1  
tr|Q9YUZ6|Q9YUZ6_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   9.2  
tr|Q9WS48|Q9WS48_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   9.2  
tr|Q8UTI4|Q8UTI4_9HIV1 Protein Tat OS=Human immunodeficiency vir...    33   9.2  

>tr|Q1M0J4|Q1M0J4_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +1

Query: 34  PPQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PPQ++ DH+  + ++P+P T G+ TS   SKK +ASK  T
Sbjct: 58  PPQSSKDHQNPVPEQPLPTTRGNPTSPKESKKKVASKAET 97


>tr|Q9IW40|Q9IW40_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 99

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PQ+  DH+  + K+P+PNT G+ T    SKK +ASK  T
Sbjct: 59  PQSRPDHQNPVPKQPLPNTRGNPTGPKESKKKVASKAKT 97


>tr|B2YFV1|B2YFV1_9HIV1 Tat protein (Fragment) OS=Human
           immunodeficiency virus 1 GN=tat PE=4 SV=1
          Length = 61

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 34  PPQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PPQ+  DH+  + K+P P T G+ T    SKK +ASK  T
Sbjct: 18  PPQSRQDHQNPVPKQPFPTTRGNPTGPKESKKEVASKAET 57


>tr|Q6X6W5|Q6X6W5_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 34  PPQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PPQ++ DH+  + K+PIP T G +T    SKK + SK  T
Sbjct: 58  PPQSSKDHQNPIPKQPIPQTQGISTGPEESKKKVESKAET 97


>tr|Q50D73|Q50D73_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 100

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +1

Query: 34  PPQTTTDHRFGLYKEPIPNTIGHATSNTSKKHLASKGAT 150
           PPQ+  DH+  + K+P+P+T G   +  SKK + SK  T
Sbjct: 58  PPQSHQDHQNPVPKQPLPDTEGPTGTKESKKEVESKTKT 96


>tr|Q0PM95|Q0PM95_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 34  PPQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PPQ++ DH+  + ++P+P T G+ T    SKK +ASK  T
Sbjct: 58  PPQSSKDHQNPVPEQPLPTTRGNPTGPKESKKKVASKAET 97


>tr|B6D267|B6D267_9HIV1 Tat protein OS=Human immunodeficiency virus
           1 GN=tat PE=4 SV=1
          Length = 101

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PQ+  DH+  + K+P+P T G+ T    SKK +ASK  T
Sbjct: 59  PQSNKDHQIPVPKQPLPTTRGNQTGPEKSKKEVASKAET 97


>tr|Q2KMR6|Q2KMR6_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASK 141
           PQ++ DHR  + K+PIP T G+ T    SKK +ASK
Sbjct: 59  PQSSKDHRNPIPKQPIPATRGNPTGPEESKKEVASK 94


>tr|Q1M0K9|Q1M0K9_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHATS-NTSKKHLASKGAT 150
           PQ++TDH   L ++P+P T G+ T    SKK +ASK  T
Sbjct: 59  PQSSTDHPHPLPEQPLPITRGNTTDPKESKKKVASKAET 97


>tr|Q1KW79|Q1KW79_9HIV1 Protein Tat OS=Human immunodeficiency virus
           1 GN=tat PE=3 SV=1
          Length = 101

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  PQTTTDHRFGLYKEPIPNTIGHAT-SNTSKKHLASKGAT 150
           P ++TDH+  + K+P+P T G++T S  SKK + SK  T
Sbjct: 59  PPSSTDHQTPISKQPLPQTRGNSTGSEESKKKVESKTKT 97