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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919765
Clone id YMU001_000128_H07
Library
Length 531
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTGACCACTGTAATATATCAACCTAGTCAAATTATAAACCAAAGAAT
GGGCTGAAAGGCACCTATAAAGGCACTCACAACATAGAGACCTTGAATTCAGACTCAGCC
TGCTACTGCCAAACACAGGATCATTAGTCGTGGTCGAGATAATGAGCAGATAAGTCAGTA
CCCCAATGATGGGCAGAAACCAAAAGCATCAATAATCCATCTCTTCACCCACCCTATGTC
ACTATTTATCCAAATCAACTCAAATCTGGTATTATAACTTCAATGACTTTCACTACTACG
CCTGCCATGGGCAAAATTTGCTTTGGTAGATATACCCCATTCAGAAGTTAAAAATGATAT
TCCCTATCCTCGAGAAATACTGTGAAAATGGTATATTCTTCTGGGCTTCGCTCCCATAAA
AGTCTTTCGTTCTTTCAACATAGTGCACCACTCCCAGCAGCTTCCCAAGGTGGGGACGCC
CTGCGTGGAAACCGTTGTGCAAACAAAATGCTAATCGTTCAGAATGATGAA
■■Homology search results ■■ -
sp_hit_id B0Z5C9
Definition sp|B0Z5C9|RPOC2_OENPA DNA-directed RNA polymerase subunit beta'' OS=Oenothera parviflora
Align length 41
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919765|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H07.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0Z5C9|RPOC2_OENPA DNA-directed RNA polymerase subunit beta''...    32   1.3  
sp|B0Z545|RPOC2_OENGL DNA-directed RNA polymerase subunit beta''...    32   1.3  
sp|Q9MTM3|RPOC2_OENEH DNA-directed RNA polymerase subunit beta''...    32   1.3  
sp|B0Z4W1|RPOC2_OENBI DNA-directed RNA polymerase subunit beta''...    32   1.3  
sp|B0Z4M7|RPOC2_OENAR DNA-directed RNA polymerase subunit beta''...    32   1.3  
sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing prot...    31   3.9  
sp|P57091|C18BA_PAEPP Parasporal crystal protein cry18Ba OS=Paen...    30   6.7  
sp|P47368|TOP1_MYCGE DNA topoisomerase 1 OS=Mycoplasma genitaliu...    30   8.8  

>sp|B0Z5C9|RPOC2_OENPA DNA-directed RNA polymerase subunit beta''
            OS=Oenothera parviflora GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKY 365
            T +   NF+ F+Y+  H Q LL     ++ LK  F +L+ Y
Sbjct: 980  TALQVVNFDSFYYFITHNQVLLTKYLQVENLKQTFQVLQYY 1020


>sp|B0Z545|RPOC2_OENGL DNA-directed RNA polymerase subunit beta''
            OS=Oenothera glazioviana GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKY 365
            T +   NF+ F+Y+  H Q LL     ++ LK  F +L+ Y
Sbjct: 980  TALQVVNFDSFYYFITHNQVLLTKYLQVENLKQTFQVLQYY 1020


>sp|Q9MTM3|RPOC2_OENEH DNA-directed RNA polymerase subunit beta''
            OS=Oenothera elata subsp. hookeri GN=rpoC2 PE=3 SV=2
          Length = 1383

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKY 365
            T +   NF+ F+Y+  H Q LL     ++ LK  F +L+ Y
Sbjct: 980  TALQVVNFDSFYYFITHNQVLLTKYLQVENLKQTFQVLQYY 1020


>sp|B0Z4W1|RPOC2_OENBI DNA-directed RNA polymerase subunit beta''
            OS=Oenothera biennis GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKY 365
            T +   NF+ F+Y+  H Q LL     ++ LK  F +L+ Y
Sbjct: 980  TALQVVNFDSFYYFITHNQVLLTKYLQVENLKQTFQVLQYY 1020


>sp|B0Z4M7|RPOC2_OENAR DNA-directed RNA polymerase subunit beta''
            OS=Oenothera argillicola GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKY 365
            T +   NF+ F+Y+  H Q LL     ++ LK  F +L+ Y
Sbjct: 980  TALQVVNFDSFYYFITHNQVLLTKYLQVENLKQTFQVLQYY 1020


>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein
           4A OS=Homo sapiens GN=ARID4A PE=1 SV=3
          Length = 1257

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 421 ERTKDFYGSEAQKNIPFSQYFSR 353
           ERT D  GSE  KN+ F Q+F R
Sbjct: 884 ERTSDCIGSEGMKNLNFEQHFER 906


>sp|P57091|C18BA_PAEPP Parasporal crystal protein cry18Ba
           OS=Paenibacillus popilliae GN=cry18Ba PE=2 SV=1
          Length = 675

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 116 KHRIISRGRDNEQISQYPNDGQKPKASIIHL--FTHPMSLFIQIN 244
           K  I    ++   I Q PNDG     S +HL  FTHP    IQ N
Sbjct: 515 KANIAGTNQNGTMIHQAPNDGTGFTVSPLHLASFTHPSEAHIQEN 559


>sp|P47368|TOP1_MYCGE DNA topoisomerase 1 OS=Mycoplasma genitalium
           GN=topA PE=3 SV=1
          Length = 709

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 208 LHPPYVTIYPNQLKSGI 258
           +HP Y+TI PN LK+G+
Sbjct: 386 IHPTYITITPNDLKNGV 402
tr_hit_id A9XW67
Definition tr|A9XW67|A9XW67_9MYRT DNA-directed RNA polymerase (Fragment) OS=Crypteronia paniculata
Align length 48
Score (bit) 34.7
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919765|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H07.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9XW67|A9XW67_9MYRT DNA-directed RNA polymerase (Fragment) OS...    35   2.9  
tr|Q4P4M1|Q4P4M1_USTMA Putative uncharacterized protein OS=Ustil...    33   6.5  
tr|Q924F3|Q924F3_HETGA Growth hormone receptor (Fragment) OS=Het...    33   8.3  

>tr|A9XW67|A9XW67_9MYRT DNA-directed RNA polymerase (Fragment)
            OS=Crypteronia paniculata GN=rpoC2 PE=3 SV=1
          Length = 1004

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 243  TQIWYYNFNDFHYYACHGQNLLW*IYPIQKLKMIFPILEKYC--ENGI 380
            T + + NF  F+Y   H Q L+     +Q LK  FP+L+ Y   ENGI
Sbjct: 953  TVLPFVNFYSFYYLITHNQILINKYLQLQNLKQTFPVLKYYLMDENGI 1000


>tr|Q4P4M1|Q4P4M1_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM04942.1 PE=4 SV=1
          Length = 1941

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 346 SLSSRNTVKMVYSSGLRSHKSLSFFQHSAPLPAAS 450
           S  +R+T +++  +G ++  SLS   HS PLPAAS
Sbjct: 409 SAKNRSTSRVLKGAGAQTDASLSMLSHSTPLPAAS 443


>tr|Q924F3|Q924F3_HETGA Growth hormone receptor (Fragment)
           OS=Heterocephalus glaber GN=GHR PE=4 SV=1
          Length = 296

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +2

Query: 176 GQKPKASIIHLFTHPMSLFIQINSNXXXXXXXXXXXXXPWAKFALVDIPHSEVKNDI 346
           GQK KA + H  THP + FI+ N+N               AK  +V  PH EVK+ +
Sbjct: 177 GQKNKAGMSHCDTHPEANFIKDNANFFKGD----------AKKCVVMTPHIEVKSHV 223