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NBDC - LSDB Archive
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BP919767
Clone id YMU001_000128_H09
Library
Length 470
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000128_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGCAAGGTATTACGAGCACATGGGTTTAATTACCATGGTACAGAGATTATGTACAGTGG
AGTGTTTGGGACAGAGCTGGTTTGTGAAATTTACATGGGAGTCGTATATTATCAACGTCT
ACGGCATATGGTGTCGGACAAATTCCAAGTACGATCAAGAGGTGCGGTAAATCCAGTAAC
TCAGCAACCAGTAAAGGGCAGATCGGCTGGGGGGGGTATCCGATTTGGAGAGATGGAGCG
TGACTCACTTCTAGCCCATGGTGCTGCCTATTTACTGCATGACAGGATGCATACCTGCTC
TGATTATCACATTGCATCTGTTTGCTCGCTTTGCGGTAGCCTAATAGCGCCGATGAGTGA
TAGTCAGTCCAAGCAGGGGCAAAGCCACTTGCCGACAGTAGGCGGCAGGATAAAGAAGGC
AACACGTAGATACTGTAAAACTGGGAAAGGGATCGAGAAAGTTGCGATGC
■■Homology search results ■■ -
sp_hit_id O54888
Definition sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
Align length 118
Score (bit) 163.0
E-value 3.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919767|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H09.
         (470 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS...   163   3e-40
sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 ...   163   4e-40
sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 ...   163   4e-40
sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 ...   162   7e-40
sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 ...   158   1e-38
sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subu...   154   2e-37
sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 ...   153   4e-37
sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA2 ...   151   1e-36
sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 ...   151   1e-36
sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 ...   150   4e-36
sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 ...   149   8e-36
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2...   129   6e-30
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2...   128   1e-29
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2...   128   1e-29
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2...   128   1e-29
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2...   127   2e-29
sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=...   122   6e-28
sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th...   122   1e-27
sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=...   121   1e-27
sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=...   120   4e-27
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2...   119   5e-27
sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=...   119   7e-27
sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=...   119   9e-27
sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC...   117   3e-26
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2...   117   3e-26
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2...   117   3e-26
sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Th...   116   6e-26
sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2...   115   1e-25
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2...   115   1e-25
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2...   114   2e-25

>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2
            OS=Rattus norvegicus GN=Polr1b PE=1 SV=1
          Length = 1135

 Score =  163 bits (413), Expect = 3e-40
 Identities = 74/118 (62%), Positives = 97/118 (82%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G++L+A G+N++GTE +YSG+ G EL  +I++GVVYYQRLRHMVSDKFQVR+ GA + VT
Sbjct: 963  GEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPM 355
             QP+ GR+  GGIRFGEMERD+LLAHG ++LLHDR+  CSD  +A VC  CGSL++P+
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPL 1080


>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2
            OS=Homo sapiens GN=POLR1B PE=1 SV=2
          Length = 1135

 Score =  163 bits (412), Expect = 4e-40
 Identities = 74/118 (62%), Positives = 97/118 (82%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G++L+A G+N++GTE +YSG+ G EL  +I++GVVYYQRLRHMVSDKFQVR+ GA + VT
Sbjct: 963  GEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPM 355
             QP+ GR+  GGIRFGEMERD+LLAHG ++LLHDR+  CSD  +A VC  CGSL++P+
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPL 1080


>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2
            OS=Euplotes octocarinatus GN=RPA2 PE=3 SV=2
          Length = 1166

 Score =  163 bits (412), Expect = 4e-40
 Identities = 85/168 (50%), Positives = 105/168 (62%), Gaps = 12/168 (7%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            GK L   GFNYHG E+MYSG+FGT L  +I++GVVYYQRLRHMVSDK Q R  G ++ +T
Sbjct: 974  GKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILT 1033

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPMSD 361
             QPVKGR  GGGIRFGEMERDSLLAHGAAY L+DR+   SDY    VC  CGS+++   +
Sbjct: 1034 HQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVN 1093

Query: 362  SQSKQGQSHLPTVGGRIKKATR------------RYCKTGKGIEKVAM 469
                + Q+ +P       K T             + CK     +KVA+
Sbjct: 1094 RAIMKTQTFIPPSLDESNKDTEDKEIHMNEKVICKVCKKNSNCKKVAL 1141


>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2
            OS=Mus musculus GN=Polr1b PE=2 SV=1
          Length = 1135

 Score =  162 bits (410), Expect = 7e-40
 Identities = 74/118 (62%), Positives = 97/118 (82%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G++L+A G+N++GTE +YSG+ G EL  +I++GVVYYQRLRHMVSDKFQVR+ GA + VT
Sbjct: 963  GEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVT 1022

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPM 355
             QP+ GR+  GGIRFGEMERD+LLAHG ++LLHDR+  CSD  +A VC  CGSL++P+
Sbjct: 1023 NQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPL 1080


>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2
            OS=Pongo abelii GN=POLR1B PE=2 SV=1
          Length = 1136

 Score =  158 bits (400), Expect = 1e-38
 Identities = 74/119 (62%), Positives = 97/119 (81%), Gaps = 1/119 (0%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G++L+A G+N++GTE +YSG+ G EL  +I++GVVYYQRLRHMVSDKFQVR+ GA + VT
Sbjct: 963  GEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVT 1022

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAA-YLLHDRMHTCSDYHIASVCSLCGSLIAPM 355
             QP+ GR+  GGIRFGEMERD+LLAHG + +LLHDR+  CSD  +A VC  CGSL++P+
Sbjct: 1023 NQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPL 1081


>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit
            RPA2 OS=Schizosaccharomyces pombe GN=rpa2 PE=2 SV=1
          Length = 1227

 Score =  154 bits (389), Expect = 2e-37
 Identities = 71/119 (59%), Positives = 92/119 (77%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G+ L   G+NYHG E MYSG+ G E+  +IY+GVVYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 1035 GEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMVSDKFQVRTTGPIHNLT 1094

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPMS 358
            +QPVKGR   GGIRFGEMERD+++ HG ++L+ DR+  CSDY  + VC  CGS+I+ MS
Sbjct: 1095 RQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCRDCGSIISIMS 1153


>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2
            OS=Drosophila melanogaster GN=RpI135 PE=2 SV=2
          Length = 1129

 Score =  153 bits (386), Expect = 4e-37
 Identities = 72/118 (61%), Positives = 91/118 (77%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            GK+L A G+NY+GTE +YSGV G E+  +I+ GVV+YQRLRHMV DK+QVRS GAV   T
Sbjct: 954  GKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEART 1013

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPM 355
             QP+KGR  GGG+RFGEMERD+L++HGAA+LL DR+   SD     VC  CGS++AP+
Sbjct: 1014 HQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPL 1071


>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA2
            OS=Saccharomyces cerevisiae GN=RPA2 PE=1 SV=1
          Length = 1203

 Score =  151 bits (382), Expect = 1e-36
 Identities = 73/115 (63%), Positives = 86/115 (74%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G+ L   G+NYHG E MYSG  G EL  +IY+GVVYYQRLRHMV+DKFQVRS G VN +T
Sbjct: 997  GEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNSLT 1056

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLI 346
             QPVKGR   GGIR GEMERD+L+ HG ++LL DR+   SDY  ASVC  CGS++
Sbjct: 1057 MQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSIL 1111


>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2
            OS=Ashbya gossypii GN=RPA2 PE=3 SV=1
          Length = 1198

 Score =  151 bits (382), Expect = 1e-36
 Identities = 77/143 (53%), Positives = 94/143 (65%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G  L   G+NYHG E MYSG  G EL  +IY+GVVYYQRLRHMV+DKFQVRS G VN +T
Sbjct: 992  GDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRSTGPVNSLT 1051

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPMSD 361
             QPVKGR   GGIR GEMERD+L+ HG ++LL DR+   SDY  ++VC  CGS++     
Sbjct: 1052 MQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQSAVCRECGSILTT--- 1108

Query: 362  SQSKQGQSHLPTVGGRIKKATRR 430
                  QS +P +G  +    RR
Sbjct: 1109 ------QSSVPKIGSMVTIRCRR 1125


>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2
            OS=Neurospora crassa GN=acr-2 PE=1 SV=2
          Length = 1234

 Score =  150 bits (378), Expect = 4e-36
 Identities = 69/116 (59%), Positives = 86/116 (74%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G  L   G+NYHG E +YSG+ G E   +IY+GVVYYQRLRHMV+DK+QVR+ G V P T
Sbjct: 1012 GHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTT 1071

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIA 349
             QP+KGR  GGGIR GEMERD+LLAHG ++LL DR+  CSDY  + +C  CGS ++
Sbjct: 1072 GQPIKGRKKGGGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLS 1127
tr_hit_id A9T5Q2
Definition tr|A9T5Q2|A9T5Q2_PHYPA DNA-directed RNA polymerase OS=Physcomitrella patens subsp. patens
Align length 158
Score (bit) 223.0
E-value 4.0e-57
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919767|Adiantum capillus-veneris mRNA, clone:
YMU001_000128_H09.
         (470 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T5Q2|A9T5Q2_PHYPA DNA-directed RNA polymerase OS=Physcomitr...   223   4e-57
tr|A7Q5C4|A7Q5C4_VITVI DNA-directed RNA polymerase OS=Vitis vini...   209   6e-53
tr|Q8LNU6|Q8LNU6_ORYSJ DNA-directed RNA polymerase (Fragment) OS...   209   7e-53
tr|Q337H6|Q337H6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   209   7e-53
tr|Q0IWP9|Q0IWP9_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   209   7e-53
tr|A3C638|A3C638_ORYSJ DNA-directed RNA polymerase OS=Oryza sati...   209   7e-53
tr|B8BHP0|B8BHP0_ORYSI Putative uncharacterized protein OS=Oryza...   207   2e-52
tr|Q9FXG4|Q9FXG4_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   198   1e-49
tr|Q9C8S4|Q9C8S4_ARATH DNA-directed RNA polymerase OS=Arabidopsi...   198   1e-49
tr|Q0WLL1|Q0WLL1_ARATH DNA-directed RNA polymerase (Fragment) OS...   195   8e-49
tr|A8I793|A8I793_CHLRE DNA-directed RNA polymerase OS=Chlamydomo...   181   2e-44
tr|B8CA95|B8CA95_THAPS DNA directed RNA polymerase i, second lar...   169   8e-41
tr|B7P1Z4|B7P1Z4_IXOSC RNA polymerase II second largest subunit ...   166   4e-40
tr|Q4TBC6|Q4TBC6_TETNG DNA-directed RNA polymerase (Fragment) OS...   166   7e-40
tr|A6QLS0|A6QLS0_BOVIN DNA-directed RNA polymerase OS=Bos taurus...   165   1e-39
tr|Q6C6G0|Q6C6G0_YARLI DNA-directed RNA polymerase OS=Yarrowia l...   164   2e-39
tr|B8JKD7|B8JKD7_DANRE Novel protein (Zgc:66298) OS=Danio rerio ...   163   4e-39
tr|A2VCY0|A2VCY0_DANRE DNA-directed RNA polymerase OS=Danio reri...   163   4e-39
tr|Q5RB08|Q5RB08_PONAB DNA-directed RNA polymerase OS=Pongo abel...   163   5e-39
tr|Q9BSR4|Q9BSR4_HUMAN DNA-directed RNA polymerase (Fragment) OS...   163   5e-39
tr|Q6DKI9|Q6DKI9_HUMAN DNA-directed RNA polymerase (Fragment) OS...   163   5e-39
tr|Q4QRK8|Q4QRK8_HUMAN DNA-directed RNA polymerase (Fragment) OS...   163   5e-39
tr|Q2TAM4|Q2TAM4_HUMAN DNA-directed RNA polymerase OS=Homo sapie...   163   5e-39
tr|B7Z6Y7|B7Z6Y7_HUMAN cDNA FLJ53412, highly similar to DNA-dire...   163   5e-39
tr|B7Z1W6|B7Z1W6_HUMAN cDNA FLJ61223, highly similar to DNA-dire...   163   5e-39
tr|A8Q440|A8Q440_MALGO DNA-directed RNA polymerase OS=Malassezia...   162   6e-39
tr|B0CXK3|B0CXK3_LACBS DNA-directed RNA polymerase OS=Laccaria b...   162   8e-39
tr|Q6PCJ2|Q6PCJ2_XENLA DNA-directed RNA polymerase OS=Xenopus la...   162   1e-38
tr|Q5KEV8|Q5KEV8_CRYNE DNA-directed RNA polymerase OS=Cryptococc...   162   1e-38
tr|B7FQD9|B7FQD9_PHATR Predicted protein (Fragment) OS=Phaeodact...   161   1e-38

>tr|A9T5Q2|A9T5Q2_PHYPA DNA-directed RNA polymerase OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_191908 PE=3 SV=1
          Length = 1199

 Score =  223 bits (568), Expect = 4e-57
 Identities = 110/158 (69%), Positives = 122/158 (77%), Gaps = 2/158 (1%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G+ + AHGFNYHGTE+MYSGV GTE VCEIY+GVVYYQRLRHMVSDK+QVRS G VNPVT
Sbjct: 1019 GQQMNAHGFNYHGTEVMYSGVLGTEFVCEIYLGVVYYQRLRHMVSDKYQVRSMGPVNPVT 1078

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIA--PM 355
            +QPVKGR  GGGIRFGEMERDSLLAHGAAYLLHDR+H CSDYH A+VC  CGSL+A  P+
Sbjct: 1079 RQPVKGRKVGGGIRFGEMERDSLLAHGAAYLLHDRLHACSDYHTANVCGFCGSLLATVPL 1138

Query: 356  SDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
              ++   G   L    G   K   R C T KGIE VAM
Sbjct: 1139 PTTRGSLGSLGLGIQQG--GKKICRVCNTSKGIETVAM 1174


>tr|A7Q5C4|A7Q5C4_VITVI DNA-directed RNA polymerase OS=Vitis vinifera
            GN=GSVIVT00030883001 PE=3 SV=1
          Length = 752

 Score =  209 bits (532), Expect = 6e-53
 Identities = 99/158 (62%), Positives = 121/158 (76%), Gaps = 2/158 (1%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHG E++YSG +GTEL CEI++G VYYQRLRHMVSDKFQVRS G V+ VT
Sbjct: 567  GSMLTSYGFNYHGVEVLYSGFYGTELTCEIFIGPVYYQRLRHMVSDKFQVRSTGTVDQVT 626

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLIAPMSD 361
            +QP+KGR  GGGIRFGEMERDS+LAHGAAYLLHDR+HTCSD+HIA VCSLCGS++     
Sbjct: 627  RQPIKGRKRGGGIRFGEMERDSMLAHGAAYLLHDRLHTCSDHHIADVCSLCGSILTTSII 686

Query: 362  SQSKQGQSHLPTV--GGRIKKATRRYCKTGKGIEKVAM 469
               K+    +  +  G   KK T   C+T KG+E V+M
Sbjct: 687  QPQKRAVREIGGLPPGRAPKKVTCHACQTSKGMETVSM 724


>tr|Q8LNU6|Q8LNU6_ORYSJ DNA-directed RNA polymerase (Fragment)
            OS=Oryza sativa subsp. japonica GN=OSJNBa0041P03.1 PE=3
            SV=1
          Length = 855

 Score =  209 bits (531), Expect = 7e-53
 Identities = 102/161 (63%), Positives = 125/161 (77%), Gaps = 5/161 (3%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHGTEI+YSGVFGTE+ CEI++G VYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 660  GPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQIT 719

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSL-----I 346
            +QP+ GR  GGGIRFGEMERD+LLAHGA+YLLHDR+H+CSDYHIA VCS+CGSL     I
Sbjct: 720  RQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVI 779

Query: 347  APMSDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
               S  ++K+    LPTV    K    + CKT KG+E VAM
Sbjct: 780  KSESQKKAKRDMLGLPTVKPP-KNFACQACKTSKGMETVAM 819


>tr|Q337H6|Q337H6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=LOC_Os10g35290 PE=3 SV=2
          Length = 1044

 Score =  209 bits (531), Expect = 7e-53
 Identities = 102/161 (63%), Positives = 125/161 (77%), Gaps = 5/161 (3%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHGTEI+YSGVFGTE+ CEI++G VYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 849  GPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQIT 908

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSL-----I 346
            +QP+ GR  GGGIRFGEMERD+LLAHGA+YLLHDR+H+CSDYHIA VCS+CGSL     I
Sbjct: 909  RQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVI 968

Query: 347  APMSDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
               S  ++K+    LPTV    K    + CKT KG+E VAM
Sbjct: 969  KSESQKKAKRDMLGLPTVKPP-KNFACQACKTSKGMETVAM 1008


>tr|Q0IWP9|Q0IWP9_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=Os10g0495600 PE=3 SV=1
          Length = 1127

 Score =  209 bits (531), Expect = 7e-53
 Identities = 102/161 (63%), Positives = 125/161 (77%), Gaps = 5/161 (3%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHGTEI+YSGVFGTE+ CEI++G VYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 932  GPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQIT 991

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSL-----I 346
            +QP+ GR  GGGIRFGEMERD+LLAHGA+YLLHDR+H+CSDYHIA VCS+CGSL     I
Sbjct: 992  RQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVI 1051

Query: 347  APMSDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
               S  ++K+    LPTV    K    + CKT KG+E VAM
Sbjct: 1052 KSESQKKAKRDMLGLPTVKPP-KNFACQACKTSKGMETVAM 1091


>tr|A3C638|A3C638_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
            subsp. japonica GN=OsJ_030760 PE=3 SV=1
          Length = 1134

 Score =  209 bits (531), Expect = 7e-53
 Identities = 102/161 (63%), Positives = 125/161 (77%), Gaps = 5/161 (3%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHGTEI+YSGVFGTE+ CEI++G VYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 939  GPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQIT 998

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSL-----I 346
            +QP+ GR  GGGIRFGEMERD+LLAHGA+YLLHDR+H+CSDYHIA VCS+CGSL     I
Sbjct: 999  RQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVI 1058

Query: 347  APMSDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
               S  ++K+    LPTV    K    + CKT KG+E VAM
Sbjct: 1059 KSESQKKAKRDMLGLPTVKPP-KNFACQACKTSKGMETVAM 1098


>tr|B8BHP0|B8BHP0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_34174 PE=4 SV=1
          Length = 1086

 Score =  207 bits (528), Expect = 2e-52
 Identities = 101/161 (62%), Positives = 125/161 (77%), Gaps = 5/161 (3%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L ++GFNYHGTEI+YSGVFGTE+ CEI++G VYYQRLRHMVSDKFQVR+ G ++ +T
Sbjct: 891  GPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTGRIDQIT 950

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSL-----I 346
            +QP+ GR  GGGIRFGEMERD+LLAHGA+YLLHDR+H+CSDYHIA VCS+CGSL     I
Sbjct: 951  RQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVI 1010

Query: 347  APMSDSQSKQGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
               S  ++K+    LPTV    K    + CKT +G+E VAM
Sbjct: 1011 KSESQKKAKRDMLGLPTVKPP-KNFACQACKTSRGMETVAM 1050


>tr|Q9FXG4|Q9FXG4_ARATH DNA-directed RNA polymerase OS=Arabidopsis
            thaliana GN=F1N18.2 PE=3 SV=1
          Length = 1233

 Score =  198 bits (503), Expect = 1e-49
 Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 4/160 (2%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L+  GFN++GTE +YSG  G EL CEI+MG VYYQRLRHMVSDKFQVRS G V+ +T
Sbjct: 1045 GSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLT 1104

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLI-APMS 358
             QP+KGR  GGGIRFGEMERDSLLAHGA+YLLHDR+HT SD+HIA VCSLCGSL+ + + 
Sbjct: 1105 HQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVV 1164

Query: 359  DSQSK---QGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
            + Q K   Q    LP  G   KK T   CKT KG+E VAM
Sbjct: 1165 NVQQKKLIQEIGKLPP-GRTPKKVTCYSCKTSKGMETVAM 1203


>tr|Q9C8S4|Q9C8S4_ARATH DNA-directed RNA polymerase OS=Arabidopsis
            thaliana GN=At1g29940 PE=3 SV=1
          Length = 1114

 Score =  198 bits (503), Expect = 1e-49
 Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 4/160 (2%)
 Frame = +2

Query: 2    GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
            G +L+  GFN++GTE +YSG  G EL CEI+MG VYYQRLRHMVSDKFQVRS G V+ +T
Sbjct: 926  GSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLT 985

Query: 182  QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLI-APMS 358
             QP+KGR  GGGIRFGEMERDSLLAHGA+YLLHDR+HT SD+HIA VCSLCGSL+ + + 
Sbjct: 986  HQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVV 1045

Query: 359  DSQSK---QGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
            + Q K   Q    LP  G   KK T   CKT KG+E VAM
Sbjct: 1046 NVQQKKLIQEIGKLPP-GRTPKKVTCYSCKTSKGMETVAM 1084


>tr|Q0WLL1|Q0WLL1_ARATH DNA-directed RNA polymerase (Fragment)
           OS=Arabidopsis thaliana GN=At1g29940 PE=2 SV=1
          Length = 578

 Score =  195 bits (496), Expect = 8e-49
 Identities = 102/160 (63%), Positives = 119/160 (74%), Gaps = 4/160 (2%)
 Frame = +2

Query: 2   GKVLRAHGFNYHGTEIMYSGVFGTELVCEIYMGVVYYQRLRHMVSDKFQVRSRGAVNPVT 181
           G +L+  GFN++ TE +YSG  G EL CEI+MG VYYQRLRHMVSDKFQVRS G V+ +T
Sbjct: 390 GSMLKEKGFNHYDTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLT 449

Query: 182 QQPVKGRSAGGGIRFGEMERDSLLAHGAAYLLHDRMHTCSDYHIASVCSLCGSLI-APMS 358
            QP+KGR  GGGIRFGEMERDSLLAHGA+YLLHDR+HT SD+HIA VCSLCGSL+ + + 
Sbjct: 450 HQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTSSVV 509

Query: 359 DSQSK---QGQSHLPTVGGRIKKATRRYCKTGKGIEKVAM 469
           + Q K   Q    LP  G   KK T   CKT KG+E VAM
Sbjct: 510 NVQQKKLIQEIGKLPP-GRTPKKVTCYSCKTSKGMETVAM 548