BP919777
Clone id YMU001_000129_A10
Library
Length 560
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTTTTTTTTTTTTTTTGAAGACAAAATAATCTTATGTATAAGTGAAAATCAAAACTATTA
ATAGTCACAATTTATAAGACATTCCATAACAAAGTCAGGAATGATTACTTCCTGTAGCAC
AAAACCCACTTCGAGAACTCCCAAGGGTGCAGACGCCAATACTTCAAACTGCAGCTGAAT
TATTGTAGAGGCCCTCAGATAATAAATTTACATAAACTGTACAAGAGCAAGCACACTGGC
AATACTAGTGATGCCTCACTCGTTCATCTCCCAGCCAGTAGTTTTTCTGCATGGGGCCAC
AAGGACCTTCCTCACCAGATAATTCATGCGGAAACTTTCTTAAGAAAGATTCTAATACCT
TCTTCAGCCTTTGGGGAAGCTGGTCCAACACCTTGTCAAGTTCAGCTCTCAGGTCGTATC
AAATCCTTGGACCCCACTCACAAGCATAAAGGAGCCAAGTGGGCTCTTTTGGGGCATTGT
TTGCCCCCAGTAAATGCAGATACTTTGCTGACACTACCTCATAATTCTTTGCTGTCTCCA
ATACGTGGGCACTGCGAGCG
■■Homology search results ■■ -
sp_hit_id Q9WSV7
Definition sp|Q9WSV7|CAPSD_TTVV5 Capsid protein OS=Torque teno virus (isolate Human/Japan/SANBAN/1999)
Align length 66
Score (bit) 32.3
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919777|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_A10.
(530 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9WSV7|CAPSD_TTVV5 Capsid protein OS=Torque teno virus (isola... 32 1.4
sp|Q8D375|SYE_WIGBR Glutamyl-tRNA synthetase OS=Wigglesworthia g... 30 7.2
sp|P16918|RHSC_ECOLI Protein rhsC OS=Escherichia coli (strain K1... 30 9.4
sp|P16917|RHSB_ECOLI Protein rhsB OS=Escherichia coli (strain K1... 30 9.4
sp|P16916|RHSA_ECOLI Protein rhsA OS=Escherichia coli (strain K1... 30 9.4
sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mu... 30 9.4
sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain OS=Bos taurus... 30 9.4

>sp|Q9WSV7|CAPSD_TTVV5 Capsid protein OS=Torque teno virus (isolate
Human/Japan/SANBAN/1999) GN=ORF1 PE=3 SV=1
Length = 745

Score = 32.3 bits (72), Expect = 1.4
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1

Query: 52 FHNKVR---NDYFL*HKTHFENSQGCRRQYFKLQLNYCRGPQIINLHKLYKSKHTGNTSD 222
F NKV N Y K+H + RR YFK QL GPQ + K Y S+ T T+D
Sbjct: 340 FRNKVNTNYNWYTYNAKSHKNDLHXLRRAYFK-QLT-TEGPQQTSSEKGYASQWTTPTTD 397

Query: 223 ASLVHL 240
A HL
Sbjct: 398 AYEYHL 403


>sp|Q8D375|SYE_WIGBR Glutamyl-tRNA synthetase OS=Wigglesworthia
glossinidia brevipalpis GN=gltX PE=3 SV=1
Length = 473

Score = 30.0 bits (66), Expect = 7.2
Identities = 12/44 (27%), Positives = 28/44 (63%)
Frame = +1

Query: 70 NDYFL*HKTHFENSQGCRRQYFKLQLNYCRGPQIINLHKLYKSK 201
N Y++ + ++ S ++ + K ++++ +GP+I NL K++K K
Sbjct: 307 NQYYIQKLSDYDISSQIKKFFNKKEIDFNQGPKIENLIKIFKKK 350


>sp|P16918|RHSC_ECOLI Protein rhsC OS=Escherichia coli (strain K12)
GN=rhsC PE=1 SV=4
Length = 1397

Score = 29.6 bits (65), Expect = 9.4
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2

Query: 466 HLLGANNAPKEPTWLLYACEWGPRI*YDLRAELD--KVLDQLPQRLKKVLESFLRKFPHE 293
H A N+P+ P WLL CE P L A L +VL L R + ++F R+ E
Sbjct: 171 HRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRT-QTFHREAAGE 229

Query: 292 LSGE 281
SGE
Sbjct: 230 FSGE 233


>sp|P16917|RHSB_ECOLI Protein rhsB OS=Escherichia coli (strain K12)
GN=rhsB PE=3 SV=4
Length = 1411

Score = 29.6 bits (65), Expect = 9.4
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2

Query: 466 HLLGANNAPKEPTWLLYACEWGPRI*YDLRAELD--KVLDQLPQRLKKVLESFLRKFPHE 293
H A N+P+ P WLL CE P L A L +VL L R + ++F R+ E
Sbjct: 171 HRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRT-QTFHREAAGE 229

Query: 292 LSGE 281
SGE
Sbjct: 230 FSGE 233


>sp|P16916|RHSA_ECOLI Protein rhsA OS=Escherichia coli (strain K12)
GN=rhsA PE=3 SV=1
Length = 1377

Score = 29.6 bits (65), Expect = 9.4
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = -2

Query: 466 HLLGANNAPKEPTWLLYACEWGPRI*YDLRAELD--KVLDQLPQRLKKVLESFLRKFPHE 293
H A N+P+ P WLL CE P L A L +VL L R + ++F R+ E
Sbjct: 171 HRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRT-QTFHREAAGE 229

Query: 292 LSGE 281
SGE
Sbjct: 230 FSGE 233


>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus
musculus GN=P4ha2 PE=2 SV=1
Length = 537

Score = 29.6 bits (65), Expect = 9.4
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 11/118 (9%)
Frame = +1

Query: 103 ENSQGCRRQYFKLQLNYCRGPQIINLHKLYKSKHTGNTSDASLVHLPASSFSA------- 261
E+ G R +LQ Y P I+ +L +K+ S L S+++
Sbjct: 129 EDESGAARALMRLQDTYKLDPDTISRGELPGTKYQAMLSVDDCFGLGRSAYNEGDYYHTV 188

Query: 262 -WGHKDLPHQIIHAETFLRKILIP---SSAFGEAGPTPCQVQLSGRIKSLDPTHKHKG 423
W + L E + K L+ S A + G V+L+ R+ SLDP+H+ G
Sbjct: 189 LWMEQVLKQLDAGEEATVTKSLVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAG 246


>sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain OS=Bos taurus
GN=COL17A1 PE=2 SV=1
Length = 1473

Score = 29.6 bits (65), Expect = 9.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3

Query: 234 SSPSQ*FFCMGPQGPSSPDNSCGNFLKKDSNTFFSLWGSWSNTLSSSALRSYQILGPHSQ 413
+SP F +GP GP P G+ +++ +S GS S+ ++ S +G S
Sbjct: 1255 TSPDVRSFIVGPPGPPGPQGPPGDTRLVSTDSSYSRSGSSSSFSRDTSYSSSMGIGGASG 1314

Query: 414 A*RSQVGSFG 443
+ G+FG
Sbjct: 1315 GSLGEAGAFG 1324


tr_hit_id A9TBP9
Definition tr|A9TBP9|A9TBP9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 101
Score (bit) 108.0
E-value 1.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919777|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_A10.
(530 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TBP9|A9TBP9_PHYPA Predicted protein (Fragment) OS=Physcomit... 108 1e-22
tr|A9TTX2|A9TTX2_PHYPA Predicted protein OS=Physcomitrella paten... 101 3e-20
tr|Q501D1|Q501D1_ARATH At1g04090 OS=Arabidopsis thaliana PE=2 SV=1 100 5e-20
tr|O64496|O64496_ARATH F20D22.14 protein OS=Arabidopsis thaliana... 100 5e-20
tr|Q9FND1|Q9FND1_ARATH Genomic DNA, chromosome 5, P1 clone:MRH10... 99 1e-19
tr|A7Q1K9|A7Q1K9_VITVI Chromosome chr7 scaffold_44, whole genome... 97 5e-19
tr|A5ADX9|A5ADX9_VITVI Putative uncharacterized protein OS=Vitis... 97 7e-19
tr|A5BKD6|A5BKD6_VITVI Putative uncharacterized protein (Chromos... 96 1e-18
tr|A7QR76|A7QR76_VITVI Chromosome chr13 scaffold_149, whole geno... 89 2e-16
tr|Q940K1|Q940K1_ARATH Putative uncharacterized protein (At5g184... 87 4e-16
tr|Q8LBJ8|Q8LBJ8_ARATH Putative uncharacterized protein OS=Arabi... 87 5e-16
tr|A2XCD5|A2XCD5_ORYSI Putative uncharacterized protein OS=Oryza... 84 3e-15
tr|Q9M8Z1|Q9M8Z1_ARATH T6K12.3 protein (AT3g04350/T6K12_3) OS=Ar... 84 4e-15
tr|B6UAX6|B6UAX6_MAIZE Putative uncharacterized protein OS=Zea m... 83 8e-15
tr|Q8LLP6|Q8LLP6_ORYSJ Os03g0721300 protein OS=Oryza sativa subs... 83 1e-14
tr|Q10RX6|Q10RX6_ORYSJ Pre-mRNA processing protein PRP39, putati... 83 1e-14
tr|Q10RX5|Q10RX5_ORYSJ Os03g0142900 protein OS=Oryza sativa subs... 83 1e-14
tr|A2XLH5|A2XLH5_ORYSI Putative uncharacterized protein OS=Oryza... 83 1e-14
tr|A2Q3A8|A2Q3A8_MEDTR Putative uncharacterized protein OS=Medic... 80 6e-14
tr|A2Q3B2|A2Q3B2_MEDTR Putative uncharacterized protein OS=Medic... 79 1e-13
tr|A2Q3B0|A2Q3B0_MEDTR Putative uncharacterized protein OS=Medic... 79 1e-13
tr|A2Q3B1|A2Q3B1_MEDTR Putative uncharacterized protein OS=Medic... 79 2e-13
tr|Q3EBG3|Q3EBG3_ARATH Uncharacterized protein At2g44260.2 OS=Ar... 77 5e-13
tr|O64861|O64861_ARATH Expressed protein (Putative uncharacteriz... 77 5e-13
tr|O64858|O64858_ARATH Expressed protein (Putative uncharacteriz... 70 9e-11
tr|Q6ZLA9|Q6ZLA9_ORYSJ Os07g0575900 protein OS=Oryza sativa subs... 67 6e-10
tr|B8B7R1|B8B7R1_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|A3BLG3|A3BLG3_ORYSJ Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|Q9S7Q5|Q9S7Q5_ARATH F1C9.34 protein (F28J7.21 protein) OS=Ara... 65 2e-09
tr|Q9SGI4|Q9SGI4_ARATH F28J7.20 protein (Putative uncharacterize... 65 3e-09

>tr|A9TBP9|A9TBP9_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_143102 PE=4 SV=1
Length = 537

Score = 108 bits (271), Expect = 1e-22
Identities = 51/101 (50%), Positives = 65/101 (64%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
A S VL ++ ++V SA Y+H G +AP+EP WL Y EWGP+I YD + LDK L
Sbjct: 437 ALSTIVLNSSVKFQVFSADYMHQRGDKDAPEEPAWLQYMREWGPKIEYDKKKYLDKFLKF 496

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDERV 227
LP +L+ LE L K P E+ GEEGP GP +KN W GDER+
Sbjct: 497 LPSKLRNSLEEILDKLPSEVMGEEGPTGPKEKNMWFGDERI 537


>tr|A9TTX2|A9TTX2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_150522 PE=4 SV=1
Length = 560

Score = 101 bits (251), Expect = 3e-20
Identities = 47/100 (47%), Positives = 62/100 (62%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
A S H+L+++ + V SA Y+H G +AP EPTWL Y WGP+I YD + + K+L
Sbjct: 460 ALSTHLLDSSVKFRVFSADYMHQRGDPDAPVEPTWLHYMRPWGPKIVYDRKKNVTKMLGL 519

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
+P L L L K PHE+ G+EGP GP +KN W GDER
Sbjct: 520 MPTMLHGSLGDVLGKLPHEVMGQEGPTGPREKNMWFGDER 559


>tr|Q501D1|Q501D1_ARATH At1g04090 OS=Arabidopsis thaliana PE=2 SV=1
Length = 572

Score = 100 bits (249), Expect = 5e-20
Identities = 45/100 (45%), Positives = 69/100 (69%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
ARS +++++ YE+++A+YL N+ EP WL Y EWGP++ YD R E+++++++
Sbjct: 475 ARSELLVDSSSRYEIIAAEYL---SGNSVLAEPPWLQYMREWGPKVVYDSREEIERLVNR 531

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
P+ ++ L + LRK P ELSGEEGP GP +KN W GDER
Sbjct: 532 FPRTVRVSLATVLRKLPVELSGEEGPTGPKEKNNWYGDER 571


>tr|O64496|O64496_ARATH F20D22.14 protein OS=Arabidopsis thaliana
GN=F20D22.14 PE=4 SV=1
Length = 1345

Score = 100 bits (249), Expect = 5e-20
Identities = 45/100 (45%), Positives = 69/100 (69%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
ARS +++++ YE+++A+YL N+ EP WL Y EWGP++ YD R E+++++++
Sbjct: 1248 ARSELLVDSSSRYEIIAAEYL---SGNSVLAEPPWLQYMREWGPKVVYDSREEIERLVNR 1304

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
P+ ++ L + LRK P ELSGEEGP GP +KN W GDER
Sbjct: 1305 FPRTVRVSLATVLRKLPVELSGEEGPTGPKEKNNWYGDER 1344


>tr|Q9FND1|Q9FND1_ARATH Genomic DNA, chromosome 5, P1 clone:MRH10
(Putative uncharacterized protein At5g43950) (Putative
uncharacterized protein At5g43950; MRH10.5)
OS=Arabidopsis thaliana GN=At5g43950/MRH10.5 PE=2 SV=1
Length = 566

Score = 99.0 bits (245), Expect = 1e-19
Identities = 48/100 (48%), Positives = 69/100 (69%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
A+S ++++ YE+V+A+YL A EP WL Y EWGP+I Y+ R+E++K+ ++
Sbjct: 471 AKSDLFVDSSLKYEIVAAEYLR-----GAVVEPPWLGYMREWGPKIVYNSRSEIEKLNER 525

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
LP RL+ +++ LRK P ELSGEEGP GP +KN W GDER
Sbjct: 526 LPWRLRSWVDAVLRKIPVELSGEEGPTGPKEKNNWFGDER 565


>tr|A7Q1K9|A7Q1K9_VITVI Chromosome chr7 scaffold_44, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028505001
PE=4 SV=1
Length = 556

Score = 97.1 bits (240), Expect = 5e-19
Identities = 47/100 (47%), Positives = 64/100 (64%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
ARS ++++ YE++ A+YL + EP WL Y EWGP I YD R+ELDK+++
Sbjct: 460 ARSNLYVDSSIEYEIIGAEYL----GDGVVTEPCWLQYMREWGPNIVYDSRSELDKMINF 515

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
LP ++ +E+ KFP ELSGEEGP GP +K W GDER
Sbjct: 516 LPAMVRYSVENIFNKFPLELSGEEGPTGPKEKKNWAGDER 555


>tr|A5ADX9|A5ADX9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_015561 PE=4 SV=1
Length = 569

Score = 96.7 bits (239), Expect = 7e-19
Identities = 47/100 (47%), Positives = 64/100 (64%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
ARS ++++ YE++ A+YL + EP WL Y EWGP I YD R+ELDK+++
Sbjct: 473 ARSNLYVDSSIEYEIIGAEYL----GDGVVTEPCWLQYMREWGPTIVYDSRSELDKMINF 528

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
LP ++ +E+ KFP ELSGEEGP GP +K W GDER
Sbjct: 529 LPAMVRYSVENIFNKFPLELSGEEGPTGPKEKKNWAGDER 568


>tr|A5BKD6|A5BKD6_VITVI Putative uncharacterized protein (Chromosome
undetermined scaffold_62, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00032834001 PE=4 SV=1
Length = 568

Score = 95.5 bits (236), Expect = 1e-18
Identities = 47/100 (47%), Positives = 64/100 (64%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
ARS ++++ NY++V+A+YL + A EP WL Y EWGP I YD RAEL+K++
Sbjct: 472 ARSKFFIDSSTNYQIVAAEYL----GDTAVVEPNWLQYMREWGPTIVYDSRAELEKIISL 527

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDER 230
LP + +E+ FP EL GEEGP GP +KN W+ DER
Sbjct: 528 LPVFFRFSVENIFDLFPTELYGEEGPTGPKEKNNWVEDER 567


>tr|A7QR76|A7QR76_VITVI Chromosome chr13 scaffold_149, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00003709001
PE=4 SV=1
Length = 521

Score = 88.6 bits (218), Expect = 2e-16
Identities = 45/99 (45%), Positives = 60/99 (60%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
A+S V++T Y VV+A+YL +A EP WL Y +WGP+I YDL AE+ +V
Sbjct: 427 AKSKMVMDTGTRYIVVAAEYL-----GSAVVEPPWLNYYRKWGPKISYDLAAEIKEVEKL 481

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDE 233
LP +LK E ++ P+E+ GEEGP GP K W GDE
Sbjct: 482 LPGKLKSAFEKLVKSLPNEILGEEGPTGPKMKKNWDGDE 520


>tr|Q940K1|Q940K1_ARATH Putative uncharacterized protein (At5g18490)
OS=Arabidopsis thaliana GN=At5g18490 PE=2 SV=1
Length = 553

Score = 87.4 bits (215), Expect = 4e-16
Identities = 44/99 (44%), Positives = 63/99 (63%)
Frame = -2

Query: 529 ARSAHVLETAKNYEVVSAKYLHLLGANNAPKEPTWLLYACEWGPRI*YDLRAELDKVLDQ 350
A+S +++++++ Y +V+A+YL A EP WL + EWGP I YD AE++K++D
Sbjct: 460 AKSKYMVDSSQRYRIVAAEYL----GEGAVSEPYWLQFMREWGPTIVYDSAAEINKIIDL 515

Query: 349 LPQRLKKVLESFLRKFPHELSGEEGPCGPMQKNYWLGDE 233
LP L+ ES FP EL GEEGP GP +K+ W GDE
Sbjct: 516 LPLILRNSFESL---FPIELYGEEGPTGPKEKDNWEGDE 551