NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919779
Clone id YMU001_000129_A12
Library
Length 517
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_A12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCCGGCTTTGTACGCAGTACTGACCATTTCTGGTGCAAATGGAGTAGAAACATCAAGAT
AATCACCCTCACAAGGAAAAGAAGGATCTGTGAGGCTGGTAAAATCTGTAATCGCCTCCT
TAGGGAGATCAAAAACATTATTTTCTTCCATTAGATGAGTATGAGAAGTAGCAGCGCATG
TACCTACTTTTGGTAACACTCCATCCATAGCAACCATCCCCACTGGATTTGCCTGCAAAT
AAAAATCATGCACTGCTGAACAGGTAGTAATAAATCCAGCACCTGATAAGCCATCCTTGG
CCTCCATTTCGGTCAAGGATGTGAAACCACCGTCCCCAGTCCAAGTCTTCTGGTTCATGC
CTTCTTGTAACGCAAAATAATTGCGCCCCCATTCATCTGTAGTATTCTCAACATGCCTTG
TTGGGTGCGCCGGGTTCAGAACATCAACAGTAGCTTCATTTGAGGCGCAAGAGTGGAACT
TTTCACTAGCCATAGCGTTAGAAGAAGGATCGAAGGG
■■Homology search results ■■ -
sp_hit_id Q99PW3
Definition sp|Q99PW3|NEUR1_RAT Sialidase-1 OS=Rattus norvegicus
Align length 55
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919779|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_A12.
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99PW3|NEUR1_RAT Sialidase-1 OS=Rattus norvegicus GN=Neu1 PE=...    32   1.4  
sp|O35657|NEUR1_MOUSE Sialidase-1 OS=Mus musculus GN=Neu1 PE=2 SV=1    32   2.3  
sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=...    31   3.0  
sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=...    31   3.0  
sp|A6BMK7|NEUR1_BOVIN Sialidase-1 OS=Bos taurus GN=NEU1 PE=2 SV=2      30   5.2  
sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium...    30   5.2  
sp|Q9DE67|LUM_COTJA Lumican OS=Coturnix coturnix japonica GN=LUM...    30   6.8  
sp|P51890|LUM_CHICK Lumican OS=Gallus gallus GN=LUM PE=1 SV=1          30   6.8  
sp|Q8LF65|ATL4G_ARATH RING-H2 finger protein ATL4G OS=Arabidopsi...    30   8.8  

>sp|Q99PW3|NEUR1_RAT Sialidase-1 OS=Rattus norvegicus GN=Neu1 PE=2
           SV=1
          Length = 409

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 466 ASNEATVDVLNPAHPTRHVENTTDEWGRNYFALQEGMNQKTWTGDGGFTSLTEME 302
           A++   V   NPAHP   V N T  W  +     +    + W G  G++SLT +E
Sbjct: 318 ATSSGIVFFSNPAHPEYRV-NLTLRWSFSNGTFWQKERVQLWPGPSGYSSLTALE 371


>sp|O35657|NEUR1_MOUSE Sialidase-1 OS=Mus musculus GN=Neu1 PE=2 SV=1
          Length = 409

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 466 ASNEATVDVLNPAHPTRHVENTTDEWGRNYFALQEGMNQKTWTGDGGFTSLTEME 302
           A++   V   NPAHP   V N T  W  +     +    + W G  G++SLT +E
Sbjct: 318 ATSSGIVFFSNPAHPEFRV-NLTLRWSFSNGTSWQKERVQVWPGPSGYSSLTALE 371


>sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus
           GN=Rbm27 PE=2 SV=2
          Length = 1060

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 490 ASEKFHSCASN-EATVDVLNPAHPTRHVENTTDEWGRNY 377
           +SE++ S A +  +TV V+ PAH   H ENTT+ W   Y
Sbjct: 225 SSEQYSSGAQSIPSTVTVIAPAH---HSENTTESWSNYY 260


>sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens
           GN=RBM27 PE=1 SV=2
          Length = 1060

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 490 ASEKFHSCASN-EATVDVLNPAHPTRHVENTTDEWGRNY 377
           +SE++ S A +  +TV V+ PAH   H ENTT+ W   Y
Sbjct: 225 SSEQYSSGAQSIPSTVTVIAPAH---HSENTTESWSNYY 260


>sp|A6BMK7|NEUR1_BOVIN Sialidase-1 OS=Bos taurus GN=NEU1 PE=2 SV=2
          Length = 415

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 466 ASNEATVDVLNPAHPTRHVENTTDEWGRNYFALQEGMNQKTWTGDGGFTSLTEME 302
           A++   V   NPAHP   V N T  W  +          + W G  G++SLT +E
Sbjct: 324 ATSSGIVFFSNPAHPEFRV-NLTLRWSFSNGTSWRKETVQLWPGPSGYSSLTTLE 377


>sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium
           ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2
          Length = 1043

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 268 TTCSAVHDFYLQANPVGMVAMDGVLPKVGTCAATSHTHLMEENNVFDLPKEAIT 107
           T C+  +D  L  N        GV  KVG    T+ T L+E+ NVFD   +A++
Sbjct: 415 TICALCNDSALDYNEA-----KGVYEKVGEATETALTCLVEKMNVFDTDLQALS 463


>sp|Q9DE67|LUM_COTJA Lumican OS=Coturnix coturnix japonica GN=LUM
           PE=2 SV=1
          Length = 343

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
 Frame = -1

Query: 412 VENTTDEWGRNYFALQE---GMNQKTWTGDGG----FTSLTEMEAKDGLSGAGFITTCSA 254
           + N  DE+ + +  LQ      N+ T +G  G     TSL E++       +   T    
Sbjct: 222 ISNIPDEYFQGFKTLQYLRLSHNKLTDSGIPGNVFNITSLVELDLSFNQLKS-IPTVSEN 280

Query: 253 VHDFYLQANPVGMVAMDGVLPKVGTCAATSHTHL-MEENNV--FDLPKE 116
           + +FYLQ N +    +      VG    +  THL ++ NN+   DLP+E
Sbjct: 281 LENFYLQVNKINKFPLSSFCKVVGPLTYSKITHLRLDGNNLTRADLPQE 329


>sp|P51890|LUM_CHICK Lumican OS=Gallus gallus GN=LUM PE=1 SV=1
          Length = 343

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
 Frame = -1

Query: 412 VENTTDEWGRNYFALQE---GMNQKTWTGDGG----FTSLTEMEAKDGLSGAGFITTCSA 254
           + N  DE+ + +  LQ      N+ T +G  G     TSL E++       +   T    
Sbjct: 222 ISNIPDEYFQGFKTLQYLRLSHNKLTDSGIPGNVFNITSLVELDLSFNQLKS-IPTVSEN 280

Query: 253 VHDFYLQANPVGMVAMDGVLPKVGTCAATSHTHL-MEENNV--FDLPKE 116
           + +FYLQ N +    +      VG    +  THL ++ NN+   DLP+E
Sbjct: 281 LENFYLQVNKINKFPLSSFCKVVGPLTYSKITHLRLDGNNLTRADLPQE 329


>sp|Q8LF65|ATL4G_ARATH RING-H2 finger protein ATL4G OS=Arabidopsis
          thaliana GN=ATL4G PE=2 SV=2
          Length = 235

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = -2

Query: 81 LFLVRVIILMFLLHLHQKWSVLRTKP 4
          + ++ ++ILM  LHL+ +W +LR+ P
Sbjct: 6  ILILLIVILMVSLHLYYRWYLLRSSP 31
tr_hit_id Q2KX14
Definition tr|Q2KX14|Q2KX14_BORA1 Putative exported protein (Fragment) OS=Bordetella avium (strain 197N)
Align length 87
Score (bit) 35.4
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919779|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_A12.
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2KX14|Q2KX14_BORA1 Putative exported protein (Fragment) OS=B...    35   1.7  
tr|B2B4I0|B2B4I0_PODAN Predicted CDS Pa_2_1360 OS=Podospora anse...    35   2.9  
tr|B4QJ29|B4QJ29_DROSI GD12659 OS=Drosophila simulans GN=GD12659...    34   5.0  
tr|B4HGT0|B4HGT0_DROSE GM24591 OS=Drosophila sechellia GN=GM2459...    34   5.0  
tr|A8PU03|A8PU03_BRUMA Neurotransmitter-gated ion-channel ligand...    34   5.0  
tr|A4YVY8|A4YVY8_BRASO Putative uncharacterized protein OS=Brady...    33   6.4  
tr|A2QX68|A2QX68_ASPNC Putative frameshift OS=Aspergillus niger ...    33   6.5  
tr|A5KC01|A5KC01_PLAVI Putative uncharacterized protein OS=Plasm...    33   8.5  

>tr|Q2KX14|Q2KX14_BORA1 Putative exported protein (Fragment)
           OS=Bordetella avium (strain 197N) GN=BAV2578 PE=3 SV=1
          Length = 497

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 25/87 (28%), Positives = 35/87 (40%)
 Frame = -1

Query: 508 PSSNAMASEKFHSCASNEATVDVLNPAHPTRHVENTTDEWGRNYFALQEGMNQKTWTGDG 329
           P+++  ASE F +  +  ATV  L  A    H        GR  F +  G+ +K W    
Sbjct: 36  PATDFSASESFEAMQAGAATVKKLINADIFSHPSGNMKFEGRQQFLVGNGLFRKNWVSAP 95

Query: 328 GFTSLTEMEAKDGLSGAGFITTCSAVH 248
             T     +A DGL       +C A H
Sbjct: 96  AST-----QASDGLGPLFNARSCQACH 117


>tr|B2B4I0|B2B4I0_PODAN Predicted CDS Pa_2_1360 OS=Podospora
           anserina PE=4 SV=1
          Length = 539

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -3

Query: 368 TRRHEPE----DLDWGRWFHILDRNGGQGWLIRCWIYYYLFSSA*FLFAGKSSGDGCYGW 201
           TRR EP+    +  WGR+ H+ D  GG G   R W    +F+S  +L +G   G G  G+
Sbjct: 289 TRRPEPDAETGERGWGRFMHVWDWEGG-GRAERGW----MFTSGLYLSSGGLVGGGVVGY 343

Query: 200 SVTKSRY 180
                R+
Sbjct: 344 CFGSGRW 350


>tr|B4QJ29|B4QJ29_DROSI GD12659 OS=Drosophila simulans GN=GD12659
           PE=4 SV=1
          Length = 301

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = -1

Query: 283 GAGFITTCSAVHDFY--LQANPVGMVAMDGVLPKVGTCAA---TSHTHLMEENNVFDLPK 119
           G G       ++D Y   Q N  G VA    LP VG C+      +  + E  +  DL K
Sbjct: 21  GEGLSVQDKEIYDMYENTQINVCGNVADGVYLPYVGNCSKYIECENKTIKEVGSCMDLAK 80

Query: 118 EAITDFTSLTDPSFPCEGDY 59
               D T + DP+ PCE  Y
Sbjct: 81  ----DNTDICDPNKPCELGY 96


>tr|B4HGT0|B4HGT0_DROSE GM24591 OS=Drosophila sechellia GN=GM24591
           PE=4 SV=1
          Length = 301

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
 Frame = -1

Query: 283 GAGFITTCSAVHDFY--LQANPVGMVAMDGVLPKVGTCAA---TSHTHLMEENNVFDLPK 119
           G G       ++D Y   Q N  G VA    LP VG C+      +  + E  +  DL K
Sbjct: 21  GEGLSVQDKEIYDMYENTQINVCGNVADGVYLPYVGNCSKYIECENKTIKEVGSCMDLAK 80

Query: 118 EAITDFTSLTDPSFPCEGDY 59
               D T + DP+ PCE  Y
Sbjct: 81  ----DNTDICDPNKPCELGY 96


>tr|A8PU03|A8PU03_BRUMA Neurotransmitter-gated ion-channel ligand
           binding domain containing protein OS=Brugia malayi
           GN=Bm1_34295 PE=3 SV=1
          Length = 477

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 517 PFDPSSNAMASEKFHSCASNEATVDVLN-PAHPTRHVENTTDEWGRNYFALQEGMNQKTW 341
           P+D  S +M   KF   + N   +DV   P +PT ++E   DE G+ Y  L++GM+  ++
Sbjct: 113 PYDKQSCSM---KFGGWSYNGFQIDVRQLPTNPTDNIETQYDENGKEYQFLEQGMDLSSY 169


>tr|A4YVY8|A4YVY8_BRASO Putative uncharacterized protein
           OS=Bradyrhizobium sp. (strain ORS278) GN=BRADO4316 PE=4
           SV=1
          Length = 156

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = -3

Query: 386 AQLFCVTRRHEPEDLDWGRWFHILDRNGGQGWLIRCWIYYYLFSSA*FLFAGKSSGDGCY 207
           A L  V+RRH  + L W RWF+  DR         C    Y            +  DGC+
Sbjct: 89  AMLLPVSRRHYADHLGWSRWFYGGDR-------FECLQLIY------------TDRDGCF 129

Query: 206 GWSVTKSRYMR 174
            WS   S   R
Sbjct: 130 PWSPVASAQFR 140


>tr|A2QX68|A2QX68_ASPNC Putative frameshift OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=An11g07820 PE=3 SV=1
          Length = 1361

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
 Frame = -2

Query: 138 MFLISLRRRLQILPASQI-----LLFLVRVIILMFLLHLHQKWSVLRTK-PD 1
           +FL+ +  RLQ+L +SQ+      L LV++I+L+ LL LH  ++ LR + PD
Sbjct: 40  LFLVLVPHRLQVLRSSQVKLNSFQLALVKLILLIVLLVLHILYTALRVEDPD 91


>tr|A5KC01|A5KC01_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_002925 PE=4 SV=1
          Length = 1601

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 328 GFTSLTEMEAKDGLSGAGFITTCSAVHDFYLQANPVGMVAMDGVLPKVGT---CAATSHT 158
           GF  L+ M+  DG+SG G      +V+ F    N  G++     L  + +    +  ++ 
Sbjct: 326 GFPGLSNMQGVDGISGYGSTNGYGSVNSFDSMGNQPGVIHASSELSAISSRNDLSRANNY 385

Query: 157 HLMEENNVFD 128
           H +  NN +D
Sbjct: 386 HPLSGNNTYD 395