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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919784
Clone id YMU001_000129_B06
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATCAAGGCCCATTGGTTGCCACAAGTGTCAAAAACGGCACCAAGTGCAAAGGCCCTGT
TTGGGATCCATGTAATCCTCTTCCTTGAAACGCCTGTATTTGACAGGGACTCTACCGCGT
GATTGCTTTCTCTCTGTTGAAGATGGTTGATGAGGGATTAAGGTACCTCCAATTTGGATC
AATCCTTCAGTGGTAAAAAGAGTGACAATATCCTCTTGATACCATTCTAATCCTTCATTG
TCAGAACTCTGCCACGAAGGATCCCATGGGTAAGGTCCATATTCGTCCGCATGTAAAGTC
TGGACCCCCACCCCGACACGCAGCACGCATGACCTGACAGGTTGACAACGTAATCCGCAA
AGGGGACAAGTAAGGTGATGTGGTGGGC
■■Homology search results ■■ -
sp_hit_id O74556
Definition sp|O74556|YCZ2_SCHPO Putative mannan endo-1,6-alpha-mannosidase C970.02 OS=Schizosaccharomyces pombe
Align length 37
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919784|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B06.
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74556|YCZ2_SCHPO Putative mannan endo-1,6-alpha-mannosidase ...    32   1.3  
sp|Q9KMJ4|Y3154_VIBCH UPF0157 protein VC_A0354 OS=Vibrio cholera...    32   1.3  
sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A OS=Arabid...    31   2.2  
sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabid...    30   2.9  
sp|A1L3H4|MUTED_XENLA Protein Muted homolog OS=Xenopus laevis GN...    30   3.8  
sp|P0AES5|GYRA_SHIFL DNA gyrase subunit A OS=Shigella flexneri G...    30   3.8  
sp|P41513|GYRA_ERWCA DNA gyrase subunit A OS=Erwinia carotovora ...    30   3.8  
sp|P0AES4|GYRA_ECOLI DNA gyrase subunit A OS=Escherichia coli (s...    30   3.8  
sp|P14829|GYRA_KLEOX DNA gyrase subunit A OS=Klebsiella oxytoca ...    30   4.9  
sp|Q3UYR4|ESPNL_MOUSE Espin-like protein OS=Mus musculus GN=Espn...    30   4.9  
sp|P84407|FETA_CHICK Alpha-fetoprotein OS=Gallus gallus GN=AFP P...    29   6.4  
sp|P37411|GYRA_SALTY DNA gyrase subunit A OS=Salmonella typhimur...    29   8.4  

>sp|O74556|YCZ2_SCHPO Putative mannan endo-1,6-alpha-mannosidase
           C970.02 OS=Schizosaccharomyces pombe GN=SPCC970.02 PE=2
           SV=1
          Length = 442

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -2

Query: 387 PTTSPYLSPLRITLSTCQVMRAACRGGGPDFTCGRIW 277
           P T+P L PL I  ST +    AC GG    TCG  W
Sbjct: 323 PFTAPLLEPLLI--STAKAAAGACCGGYDGVTCGVQW 357


>sp|Q9KMJ4|Y3154_VIBCH UPF0157 protein VC_A0354 OS=Vibrio cholerae
           GN=VC_A0354 PE=3 SV=1
          Length = 188

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -3

Query: 353 LRCQPVRSCVLRVGVGVQTLHADEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLIQ 174
           +RCQP+R  +  +G  +Q   ADEY         Q+S       Y+ +I  L     +  
Sbjct: 16  MRCQPLRRALCLLGDNMQFYKADEY---------QASCENLYRKYELEIAALLPDASIEH 66

Query: 173 IGGTLIPHQPS 141
           IG + IP+  S
Sbjct: 67  IGTSSIPNAVS 77


>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type-3-A
           OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=1
          Length = 204

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 322 CVSGWGSRLYMRTNMDLTHGILRGRV 245
           C+SGWG  +Y+ T  ++   IL+GR+
Sbjct: 178 CLSGWGGHVYIVTPTEIKERILKGRM 203


>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B
           OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1
          Length = 204

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 322 CVSGWGSRLYMRTNMDLTHGILRGRV 245
           C+SGWG  +Y+ T  ++   IL+GR+
Sbjct: 178 CLSGWGGHVYVVTPKEVKERILKGRM 203


>sp|A1L3H4|MUTED_XENLA Protein Muted homolog OS=Xenopus laevis
           GN=muted PE=2 SV=1
          Length = 188

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -1

Query: 175 KLEVP*SLINHLQQRESNHAVESLSNTGVSRKRITWIP 62
           KLE     I+ LQQRE  +A  S S  G  + R  W P
Sbjct: 111 KLETANHTIHRLQQRELENAKRSASKAGEEKMRAHWEP 148


>sp|P0AES5|GYRA_SHIFL DNA gyrase subunit A OS=Shigella flexneri
           GN=gyrA PE=3 SV=1
          Length = 875

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 218 QEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMD 66
           QED+V   + +G ++       +QP S    Q RG       R KEED++D
Sbjct: 536 QEDVVVTLSHQGYVK-------YQPLSEYEAQRRGGKGKSAARIKEEDFID 579


>sp|P41513|GYRA_ERWCA DNA gyrase subunit A OS=Erwinia carotovora
           GN=gyrA PE=3 SV=1
          Length = 878

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 218 QEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMD 66
           QED+V   + +G ++       +QP S    Q RG       R KEED++D
Sbjct: 536 QEDVVVTLSHQGYVK-------YQPLSDYEAQRRGGKGKSAARIKEEDFID 579


>sp|P0AES4|GYRA_ECOLI DNA gyrase subunit A OS=Escherichia coli
           (strain K12) GN=gyrA PE=1 SV=1
          Length = 875

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 218 QEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMD 66
           QED+V   + +G ++       +QP S    Q RG       R KEED++D
Sbjct: 536 QEDVVVTLSHQGYVK-------YQPLSEYEAQRRGGKGKSAARIKEEDFID 579


>sp|P14829|GYRA_KLEOX DNA gyrase subunit A OS=Klebsiella oxytoca
           GN=gyrA PE=3 SV=1
          Length = 876

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 218 QEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMD 66
           QED+V   + EG ++       +QP +    Q RG       R KEED++D
Sbjct: 535 QEDVVVTLSHEGYVK-------YQPVNDYEAQRRGGKGKSAPRIKEEDFID 578


>sp|Q3UYR4|ESPNL_MOUSE Espin-like protein OS=Mus musculus GN=Espnl
           PE=2 SV=1
          Length = 1005

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +3

Query: 90  TPVFDRDSTA*LLSLC*RWLMRD*GTSNLDQSFSG 194
           TPV D  +T  L  LC  WL+RD G    DQ  SG
Sbjct: 72  TPVHDAAATGNLAELC--WLVRDAGCGLQDQDASG 104
tr_hit_id B8AND6
Definition tr|B8AND6|B8AND6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 85
Score (bit) 87.8
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919784|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B06.
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8AND6|B8AND6_ORYSI Putative uncharacterized protein OS=Oryza...    88   2e-16
tr|Q10RN3|Q10RN3_ORYSJ Os03g0152600 protein OS=Oryza sativa subs...    86   7e-16
tr|Q10RN2|Q10RN2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    86   7e-16
tr|A7QJG6|A7QJG6_VITVI Chromosome chr8 scaffold_106, whole genom...    79   1e-13
tr|Q8L771|Q8L771_ARATH Putative uncharacterized protein (Putativ...    77   4e-13
tr|A8MSG0|A8MSG0_ARATH Uncharacterized protein At2g36895.2 OS=Ar...    72   2e-11
tr|A9RKS9|A9RKS9_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-09
tr|A3AE79|A3AE79_ORYSJ Putative uncharacterized protein OS=Oryza...    44   3e-04
tr|B0JS56|B0JS56_MICAN Putative uncharacterized protein OS=Micro...    35   1.9  
tr|B6BPS6|B6BPS6_9RICK Valyl-tRNA synthetase OS=Candidatus Pelag...    33   5.5  
tr|A3IV54|A3IV54_9CHRO Putative uncharacterized protein OS=Cyano...    33   5.5  
tr|A8JC53|A8JC53_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   7.2  

>tr|B8AND6|B8AND6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10055 PE=4 SV=1
          Length = 239

 Score = 87.8 bits (216), Expect = 2e-16
 Identities = 39/85 (45%), Positives = 55/85 (64%)
 Frame = -3

Query: 287 DEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRV 108
           D YGPYPWD S   +    ++W  ED VTLFT++GL+QIGG+L+P + + +E++Q + + 
Sbjct: 59  DLYGPYPWDQSLDLTTGLDIQWVPEDRVTLFTSDGLVQIGGSLVPRRITPSEKRQRKVKG 118

Query: 107 PVKYRRFKEEDYMDPKQGLCTWCRF 33
               RRF+E  YMDP Q LC    F
Sbjct: 119 IQNIRRFQESSYMDPNQSLCLGALF 143


>tr|Q10RN3|Q10RN3_ORYSJ Os03g0152600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0152600 PE=4 SV=1
          Length = 239

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = -3

Query: 287 DEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRV 108
           D YGPYPWD S   +    ++W  ED VTLFT++GL+QIGG+L+P + + +E++Q + + 
Sbjct: 59  DLYGPYPWDQSLDLTTGLDIQWVPEDRVTLFTSDGLVQIGGSLVPRRITPSEKRQRKVKG 118

Query: 107 PVKYRRFKEEDYMDPKQGLCTWCRF 33
               +RF+E  YMDP Q LC    F
Sbjct: 119 IQNIQRFQESSYMDPNQSLCLGALF 143


>tr|Q10RN2|Q10RN2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g05800 PE=4 SV=1
          Length = 211

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 38/85 (44%), Positives = 55/85 (64%)
 Frame = -3

Query: 287 DEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRV 108
           D YGPYPWD S   +    ++W  ED VTLFT++GL+QIGG+L+P + + +E++Q + + 
Sbjct: 59  DLYGPYPWDQSLDLTTGLDIQWVPEDRVTLFTSDGLVQIGGSLVPRRITPSEKRQRKVKG 118

Query: 107 PVKYRRFKEEDYMDPKQGLCTWCRF 33
               +RF+E  YMDP Q LC    F
Sbjct: 119 IQNIQRFQESSYMDPNQSLCLGALF 143


>tr|A7QJG6|A7QJG6_VITVI Chromosome chr8 scaffold_106, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000630001
           PE=4 SV=1
          Length = 232

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
 Frame = -3

Query: 287 DEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRV 108
           D +G +PWD      +   ++W  E+ VTLFT +GLIQIGG+L+P    S+++K  R R 
Sbjct: 58  DPFGFFPWD------NENDIQWVPEERVTLFTADGLIQIGGSLVPRHVPSSDKKHRRSRT 111

Query: 107 PVKYRRFKEEDYMDPKQ-GLCTWCRF 33
             K++RF+E DY+DPKQ GLC    F
Sbjct: 112 Q-KFQRFQESDYLDPKQKGLCLGALF 136


>tr|Q8L771|Q8L771_ARATH Putative uncharacterized protein (Putative
           uncharacterized protein not annotated) OS=Arabidopsis
           thaliana GN=not annotated PE=2 SV=1
          Length = 232

 Score = 77.0 bits (188), Expect = 4e-13
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
 Frame = -3

Query: 332 SCVLRVGVGVQTLHADEYGPYPWDPS-----WQSSDNEGLEWYQEDIVTLFTTEGLIQIG 168
           S + RV      + A  YG +  D +     W  ++NE +EW  E+ +TLFT++GL+QIG
Sbjct: 33  SLLSRVRPSRFAVKASHYGNFSDDDAFNFFPWSDANNE-IEWVPEERITLFTSDGLVQIG 91

Query: 167 GTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMDPKQGLCTWCRF 33
           G ++P +  S+ +K  R R   K+++F E  YMDP QGLC    F
Sbjct: 92  GNMVPRRIKSSNKKHGRSRSLEKHQKFHESAYMDPAQGLCLGALF 136


>tr|A8MSG0|A8MSG0_ARATH Uncharacterized protein At2g36895.2
           OS=Arabidopsis thaliana GN=At2g36895 PE=4 SV=1
          Length = 231

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
 Frame = -3

Query: 332 SCVLRVGVGVQTLHADEYGPYPWDPS-----WQSSDNEGLEWYQEDIVTLFTTEGLIQIG 168
           S + RV      + A  YG +  D +     W  ++NE +EW  E+ +TLFT++GL+QIG
Sbjct: 33  SLLSRVRPSRFAVKASHYGNFSDDDAFNFFPWSDANNE-IEWVPEERITLFTSDGLVQIG 91

Query: 167 GTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMDPKQGLCTWCRF 33
           G ++P +  S+  K  R R   K+++F E  YMDP QGLC    F
Sbjct: 92  GNMVPRRIKSS-NKHGRSRSLEKHQKFHESAYMDPAQGLCLGALF 135


>tr|A9RKS9|A9RKS9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115793 PE=4 SV=1
          Length = 158

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/61 (49%), Positives = 41/61 (67%)
 Frame = -3

Query: 230 LEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRVPVKYRRFKEEDYMDPKQGL 51
           ++W +ED  T FTT+GL++IGG++ P      ++K    R     RR+KEEDYMDPKQGL
Sbjct: 2   VDWVREDTFTFFTTDGLVRIGGSIRPSFGIDWQKKHRLRR-----RRYKEEDYMDPKQGL 56

Query: 50  C 48
           C
Sbjct: 57  C 57


>tr|A3AE79|A3AE79_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009101 PE=4 SV=1
          Length = 229

 Score = 43.5 bits (101), Expect(2) = 3e-04
 Identities = 17/33 (51%), Positives = 27/33 (81%)
 Frame = -3

Query: 230 LEWYQEDIVTLFTTEGLIQIGGTLIPHQPSSTE 132
           ++W  ED VTLFT++GL+QIGG+L+P + + +E
Sbjct: 107 IQWVPEDRVTLFTSDGLVQIGGSLVPRRITPSE 139



 Score = 23.9 bits (50), Expect(2) = 3e-04
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 387 PTTSPYLSPLRITLSTCQVMRAACRGGGPDFTCGRIWTLPMGS 259
           P  SP L PLR+ L+       A        + G +W LPMGS
Sbjct: 32  PRVSPPL-PLRVPLAP-----PAASSSWEGRSRGSVWALPMGS 68


>tr|B0JS56|B0JS56_MICAN Putative uncharacterized protein
           OS=Microcystis aeruginosa (strain NIES-843) GN=MAE_41920
           PE=4 SV=1
          Length = 540

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = -3

Query: 341 PVRSCVLRVGVGV-----QTLHADEYGPYPWDPSWQSSDNEGLEWYQEDIVTLFTTEGLI 177
           P R  V  V +G+      T+   ++   PW  ++ S D + L  YQ+D++ L+  E + 
Sbjct: 384 PKRKPVFLVSLGIFVLILATVKPLDWWRIPWSDNYFSIDRQALVQYQDDVIVLWGGEPV- 442

Query: 176 QIGGTLIPHQPSST 135
              G ++P+ PS+T
Sbjct: 443 ---GYVVPYFPSNT 453


>tr|B6BPS6|B6BPS6_9RICK Valyl-tRNA synthetase OS=Candidatus
           Pelagibacter sp. HTCC7211 GN=valS PE=4 SV=1
          Length = 875

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 215 EDIVTLFTTEGLIQIGGTLIPHQPSSTERKQSRGRV---PVKYRRFK--EEDYMDPKQG 54
           ++ +T+ TT     +G T I   P     K   G++   P+  R+ K  E+DY DP+QG
Sbjct: 206 DEFITIATTRPETMLGDTAIAVNPKDERFKSFIGKIVTIPIVGRKIKIIEDDYADPEQG 264