BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919785|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B07.
         (336 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09992|NCAP_LYCVA Nucleoprotein OS=Lymphocytic choriomeningit...    29   8.4  

>sp|P09992|NCAP_LYCVA Nucleoprotein OS=Lymphocytic choriomeningitis
           virus (strain Armstrong) GN=N PE=1 SV=1
          Length = 558

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +3

Query: 6   TQNVKTCYFPFALRYTQCVITRDHRLTNIKDGTQKLPGLSFRFIFHVKGTSGKHELIDQN 185
           ++ VK+  +  ALR      T D +   IKD T  L GL F  + +V+    K +  D+ 
Sbjct: 4   SKEVKSFQWTQALRRELQSFTSDVKAAVIKDATNLLNGLDFSEVSNVQRIMRKEKRDDK- 62

Query: 186 LDIPRYSSLRAGSSSVIN 239
            D+ R  SL     S+++
Sbjct: 63  -DLQRLRSLNQTVHSLVD 79

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919785|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_B07.
         (336 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3PMZ7|B3PMZ7_MYCA5 DNA polymerase III subunit alpha OS=Mycop...    33   9.4  
tr|Q0YP27|Q0YP27_9CHLB Putative uncharacterized protein OS=Chlor...    33   9.4  

>tr|B3PMZ7|B3PMZ7_MYCA5 DNA polymerase III subunit alpha
           OS=Mycoplasma arthritidis (strain 158L3-1) GN=dnaE PE=4
           SV=1
          Length = 999

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 27  YFPFALRYTQCVITRDHRLTNI--KDGTQKLPGLSFRFIFHVKGTSGKHELIDQNLDI 194
           +F FA  Y +C   + H+L +I   D   ++ G  +RFI H K  +G  EL + + DI
Sbjct: 44  FFSFAPFYEKC---QAHKLKSIFGLDVDIEIQGKPYRFILHAKNNTGLFELFNLSYDI 98


>tr|Q0YP27|Q0YP27_9CHLB Putative uncharacterized protein
           OS=Chlorobium ferrooxidans DSM 13031 GN=CferDRAFT_0058
           PE=3 SV=1
          Length = 434

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 9   QNVKTCYFPFALRYTQCVITRDHRLTNIKDGTQKLPGLSFRFIFHVKGTSGKHELID-QN 185
           Q+V+    PF   + Q ++  D+ +  + DGT  L    F  +  +  +  K ++I  ++
Sbjct: 173 QSVRVLGIPFDTHFAQVMVNADYDMKRVVDGTDSLNIQGFSSLTDITMSRAKTDIIQGRS 232

Query: 186 LDIPRYS 206
           L IPR S
Sbjct: 233 LSIPRSS 239