BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919791|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C01.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis t...    32   2.5  
sp|O94660|NIT2_SCHPO Probable hydrolase nit2 OS=Schizosaccharomy...    31   4.3  
sp|Q9Z439|UBIE_PSEPU Ubiquinone/menaquinone biosynthesis methylt...    30   5.7  
sp|Q1I3T0|UBIE_PSEE4 Ubiquinone/menaquinone biosynthesis methylt...    30   5.7  
sp|A7M958|RPOB_CUSRE DNA-directed RNA polymerase subunit beta OS...    30   7.4  
sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis th...    30   9.8  

>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis
           thaliana GN=SDE3 PE=2 SV=1
          Length = 1002

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 470 SYVEDLVYNY-LHQAMVYIACYLIYNWELTNEAENHNSINESMNIIPN 330
           +YV  LV NY  H  ++ +   L Y+ EL    E+ +S+  S+N +PN
Sbjct: 612 NYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPN 659


>sp|O94660|NIT2_SCHPO Probable hydrolase nit2 OS=Schizosaccharomyces
           pombe GN=nit2 PE=2 SV=1
          Length = 276

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 164 IFLPQA--FTLNPNDSAQELGKHPDFDASIMVEVLRDSLTAHAIVV 295
           IF P+A  F  + +D A EL  HPD   S  +  +R+S T H+I V
Sbjct: 37  IFFPEASDFIAHNSDEAIELTNHPD--CSKFIRDVRESATKHSIFV 80


>sp|Q9Z439|UBIE_PSEPU Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Pseudomonas putida GN=ubiE
           PE=3 SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +2

Query: 113 SRELDSLLCPPYDP*TSIFLPQAFTLNPNDS------AQELGKHPDFDA--SIMVEVLRD 268
           S+  + L+   YD  +  F+P A  L  NDS      A+ +  HPD +   ++MVE   D
Sbjct: 177 SKPTNKLMSKAYDAYSFAFMPLAGKLITNDSESYRYLAESIRMHPDQETLKAMMVEAGFD 236

Query: 269 SLTAHAIVVG 298
            +T H +  G
Sbjct: 237 RVTYHNMTSG 246


>sp|Q1I3T0|UBIE_PSEE4 Ubiquinone/menaquinone biosynthesis
           methyltransferase ubiE OS=Pseudomonas entomophila
           (strain L48) GN=ubiE PE=3 SV=1
          Length = 256

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = +2

Query: 113 SRELDSLLCPPYDP*TSIFLPQAFTLNPNDS------AQELGKHPDFDA--SIMVEVLRD 268
           S+  + L+   YD  +  F+P A  L  NDS      A+ +  HPD +   ++MVE   D
Sbjct: 177 SKPTNKLMSKAYDAYSFAFMPLAGKLITNDSESYRYLAESIRMHPDQETLKAMMVEAGFD 236

Query: 269 SLTAHAIVVG 298
            +T H +  G
Sbjct: 237 RVTYHNMTSG 246


>sp|A7M958|RPOB_CUSRE DNA-directed RNA polymerase subunit beta
           OS=Cuscuta reflexa GN=rpoB PE=2 SV=2
          Length = 1070

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +3

Query: 378 FIGQLPIVNEIAGYIDHGLMKIVVYKI 458
           FIG LPI+N +  +I +G+ +IV+ +I
Sbjct: 100 FIGSLPIMNSLGTFIVNGIYRIVINQI 126


>sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis
            thaliana GN=BRM PE=1 SV=1
          Length = 2193

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 141  GHSKESNSLEGVDDEPKIGGEVRVWVGDEVEDVRGDHQ 28
            G+S+ES+    +D   +  G++R +  DE+    GDHQ
Sbjct: 1628 GYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQ 1665

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919791|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C01.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******