BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919794|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C04.
         (349 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11639|Y31K_MCMV Uncharacterized 31.5 kDa protein OS=Maize ch...    30   4.8  
sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sap...    29   8.2  
sp|Q5JGT3|RLX_PYRKO 50S ribosomal protein LX OS=Pyrococcus kodak...    29   8.3  

>sp|P11639|Y31K_MCMV Uncharacterized 31.5 kDa protein OS=Maize
           chlorotic mottle virus PE=4 SV=1
          Length = 289

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 111 VETWVDFSKNFPTLARESVELIPSFLGSKH 200
           +++W + S+NFP L R    L+ + L ++H
Sbjct: 67  IKSWTELSENFPDLVRYPESLVETLLDTEH 96


>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo
           sapiens GN=NPC1L1 PE=2 SV=1
          Length = 1359

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
 Frame = +1

Query: 109 LWKLGSTSPKISLHWPG----------------NQLSLFPPSLVVNT*SQKIKYLVS*LI 240
           L +L  + P  ++H PG                + ++L   S + NT ++KI      L+
Sbjct: 15  LLRLAQSEPYTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILL 74

Query: 241 QLESCPTIYTNCLTRICCPPMQL-----QISLTK 327
           Q + CP +YT   T+ CC   QL      +S+TK
Sbjct: 75  Q-KICPRLYTGPNTQACCSAKQLVSLEASLSITK 107


>sp|Q5JGT3|RLX_PYRKO 50S ribosomal protein LX OS=Pyrococcus
           kodakaraensis GN=rplX PE=3 SV=1
          Length = 77

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 129 FSKNFPTLARESV-ELIPSFLGSKHLVPKDQIF 224
           F+K +  L  E V EL+ S +GSKH VP+ +I+
Sbjct: 21  FTKEYRALKEEHVRELVYSDIGSKHRVPRTKIW 53

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919794|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C04.
         (349 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******