BP919796
Clone id YMU001_000129_C06
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTACAAAATTATCCGAATTTACTTTTAGCCCCAAATTGACAAAGTT
TCCCGAAGTTTACAAACGTGCATCGGATGGCCCACATACTCCCAACCGTAGATCCCTTTG
AAAGATACCCATGTAAAATAGTGTAGAAAACTGTCGAGGCTGGCCCACCCTTGACACACG
GTGCTCGGCAGTAACAGTCTTTAACAACATGCGAAACTTCAATCAGCTCATGAATTAAGC
CTAAAAAGTACACTGTACAGATTTTTATGGTAAGCCAAATAGAACAAACATCATGAACTG
AGAACTGGTATAACATTCGTCCTCTGAACAGTTGATGCCTAAGGGAGGGCCAGACGGTAG
CAAAGATCGAAGTCAGCTCGTCCTTGCCTCGTTAATGCTTTGTACAAGCTCATCAAATTT
TGCACCTTTCACCTCAGCAATTTCTTCCCGA
■■Homology search results ■■ -
sp_hit_id Q04444
Definition sp|Q04444|COXX_BACPF Protoheme IX farnesyltransferase OS=Bacillus pseudofirmus
Align length 24
Score (bit) 28.9
E-value 9.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919796|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C06.
(435 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q04444|COXX_BACPF Protoheme IX farnesyltransferase OS=Bacillu... 29 9.6
sp|Q12EE9|Y1142_POLSJ UPF0301 protein Bpro_1142 OS=Polaromonas s... 29 9.8

>sp|Q04444|COXX_BACPF Protoheme IX farnesyltransferase OS=Bacillus
pseudofirmus GN=ctaB PE=3 SV=1
Length = 312

Score = 28.9 bits (63), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3

Query: 154 GWASLDSFLHYFTWVSFKGIYGWE 83
GWA++D LH + W+ F ++ W+
Sbjct: 181 GWAAIDGGLHLYAWLLFFIMFLWQ 204


>sp|Q12EE9|Y1142_POLSJ UPF0301 protein Bpro_1142 OS=Polaromonas sp.
(strain JS666 / ATCC BAA-500) GN=Bpro_1142 PE=3 SV=1
Length = 195

Score = 28.9 bits (63), Expect = 9.8
Identities = 23/89 (25%), Positives = 38/89 (42%)
Frame = -1

Query: 360 LTSIFATVWPSLRHQLFRGRMLYQFSVHDVCSIWLTIKICTVYFLGLIHELIEVSHVVKD 181
LT F P L + F ++Y D ++ L I + L + + +E+ + +D
Sbjct: 10 LTHHFLIAMPGLEDEAFAKSVVYMCEHSDRGALGLVINKPSDINLKNLFDKVELP-LRRD 68

Query: 180 CYCRAPCVKGGPASTVFYTILHGYLSKGS 94
AP +GGP T +LH + GS
Sbjct: 69 DLTEAPVFQGGPVQTERGFVLHESMMPGS 97


tr_hit_id A0CB23
Definition tr|A0CB23|A0CB23_PARTE Methionine aminopeptidase OS=Paramecium tetraurelia
Align length 39
Score (bit) 32.7
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919796|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C06.
(435 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0CB23|A0CB23_PARTE Methionine aminopeptidase OS=Paramecium t... 33 9.2

>tr|A0CB23|A0CB23_PARTE Methionine aminopeptidase OS=Paramecium
tetraurelia GN=GSPATT00036773001 PE=3 SV=1
Length = 466

Score = 32.7 bits (73), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1

Query: 225 GLIHELIEVSHVVKDCYCRAPCVKGGPASTVFYTILHGY 109
G++++ +E SH +KD YC+ P VK A + I Y
Sbjct: 360 GVVYDDLECSHYMKDFYCKQPVVKNPKAKALLNHINQKY 398