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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919800
Clone id YMU001_000129_C10
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCGCAGCCACTGACTGGCCTTCCAAAAAACCCAGGAACCCATGACCCTCTCTTGGTAGAC
CGAAATCCGGCAGACACCCTGATCGTTAACTACTCTTTTCAGTTCTGATATTTGCATGCT
CCTCTTACTCAAATGACATGCTTCGCGTATATGCCTGAGCAGGGTCCCAGAATATAATTG
TATCACCCCCTTCTCAACCTTTATAAGGGGCTGACCTCCCAAGCAACAAAAAATGTACAA
AACACAAAAGCTTCTGCCACTAAAGAAAGCATCATGATCAAAATTGAGCTGCGTACAAAG
ACGCACAGAACCACTCATGCTTCCTTCGACATTGCTGGAAGCTAGTTCATTGAGCCCGGA
TAGACTTCGTATTTTGAGTACCTGCAGGTAATATCTCAAGGGCGAA
■■Homology search results ■■ -
sp_hit_id Q6S5H8
Definition sp|Q6S5H8|TPC1_HORVU Two pore calcium channel protein 1 OS=Hordeum vulgare
Align length 86
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919800|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C10.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6S5H8|TPC1_HORVU Two pore calcium channel protein 1 OS=Horde...    31   2.2  
sp|Q6YLX9|TPC1_WHEAT Two pore calcium channel protein 1 OS=Triti...    30   2.8  
sp|Q8EJQ0|Y412_SHEON UPF0289 protein SO_0412 OS=Shewanella oneid...    30   4.8  
sp|Q86UK5|LBN_HUMAN Limbin OS=Homo sapiens GN=EVC2 PE=1 SV=1           29   6.3  
sp|P09211|GSTP1_HUMAN Glutathione S-transferase P OS=Homo sapien...    29   6.3  
sp|Q6EBC2|IL31_HUMAN Interleukin-31 OS=Homo sapiens GN=IL31 PE=2...    29   8.2  

>sp|Q6S5H8|TPC1_HORVU Two pore calcium channel protein 1 OS=Hordeum
           vulgare GN=TPC1 PE=2 SV=1
          Length = 742

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = -2

Query: 264 FSGRSFCVLYIFCCLGGQPLIKVEKGVIQLYSGTLLRHIREACHLSKRSMQISELKRVVN 85
           + G  FC+L ++C LG    +++  G++   + TL     E   L      +       N
Sbjct: 580 YLGIVFCILCMYCSLG----LQIFGGIVYAGNPTL-----EETDLFSNDYLLFNF----N 626

Query: 84  DQGVCRISVYQERVMGSWVFWKASQW 7
           D     ++++   VMG+W  W  S W
Sbjct: 627 DYPSGMVTLFNLLVMGNWQVWMESYW 652


>sp|Q6YLX9|TPC1_WHEAT Two pore calcium channel protein 1 OS=Triticum
           aestivum GN=TPC1 PE=2 SV=1
          Length = 742

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = -2

Query: 264 FSGRSFCVLYIFCCLGGQPLIKVEKGVIQLYSGTLLRHIREACHLSKRSMQISELKRVVN 85
           + G  FCVL ++C +G    +++  G++   + TL     E   L      +       N
Sbjct: 580 YLGIVFCVLCMYCSIG----LQIFGGIVYAGNPTL-----EETDLFNNDYLLFNF----N 626

Query: 84  DQGVCRISVYQERVMGSWVFWKASQW 7
           D     ++++   VMG+W  W  S W
Sbjct: 627 DYPSGMVTLFNLLVMGNWQVWMESYW 652


>sp|Q8EJQ0|Y412_SHEON UPF0289 protein SO_0412 OS=Shewanella
           oneidensis GN=SO_0412 PE=3 SV=1
          Length = 244

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 309 SVRLCTQLNFDHD--AFFSGRSFCVLYIFCCLGGQPLIKVEKGVIQLYSGTLLRHI 148
           S +LC  LN DH    F+   S C L   C    + L  +E+ ++QL     L HI
Sbjct: 24  SKQLCNNLNNDHQHRCFYPLFSLCELSERCDYRNEVLKDIERNLLQLSKWQELEHI 79


>sp|Q86UK5|LBN_HUMAN Limbin OS=Homo sapiens GN=EVC2 PE=1 SV=1
          Length = 1308

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 132  LSKRSMQISELKRVVNDQGVCRISVYQERVMGSWVFWKA 16
            L   S ++ EL+R + DQ V + +  Q++ + SW  W A
Sbjct: 1014 LESHSRELQELERKLEDQLVQQEAAQQQQALASWQQWVA 1052


>sp|P09211|GSTP1_HUMAN Glutathione S-transferase P OS=Homo sapiens
           GN=GSTP1 PE=1 SV=2
          Length = 210

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -2

Query: 225 CLGGQPLIKVEKGVIQLY-SGTLLRHIREACHLSKRSMQISELKRVVND 82
           CL GQ L K + G + LY S T+LRH+     L  +  Q + L  +VND
Sbjct: 48  CLYGQ-LPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVND 95


>sp|Q6EBC2|IL31_HUMAN Interleukin-31 OS=Homo sapiens GN=IL31 PE=2
           SV=1
          Length = 164

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 270 AFFSGRSFCVLYIFCCLGG 214
           A  SG S  VL++FCCLGG
Sbjct: 2   ASHSGPSTSVLFLFCCLGG 20
tr_hit_id Q9Y090
Definition tr|Q9Y090|Q9Y090_DROME L(3)70Da OS=Drosophila melanogaster
Align length 45
Score (bit) 36.2
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919800|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_C10.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9Y090|Q9Y090_DROME L(3)70Da OS=Drosophila melanogaster GN=l(...    36   0.85 
tr|Q9VUC7|Q9VUC7_DROME Lethal (3) 70Da OS=Drosophila melanogaste...    36   0.85 
tr|B3ND11|B3ND11_DROER GG15672 OS=Drosophila erecta GN=GG15672 P...    36   0.85 
tr|B4PI00|B4PI00_DROYA GE22001 OS=Drosophila yakuba GN=GE22001 P...    33   7.2  
tr|A6RL80|A6RL80_BOTFB Putative uncharacterized protein OS=Botry...    33   9.4  

>tr|Q9Y090|Q9Y090_DROME L(3)70Da OS=Drosophila melanogaster
           GN=l(3)70Da PE=2 SV=1
          Length = 1006

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 196 NLYKGLTSQATKNV--QNTKASATKESIMIKIELRTKTHRTTHAS 324
           NLYKGLT+  +  V  +NTK S +K +  +K EL  K    TH+S
Sbjct: 169 NLYKGLTNGTSNGVIEENTKLSRSKTTAQVKDELTEKLTPLTHSS 213


>tr|Q9VUC7|Q9VUC7_DROME Lethal (3) 70Da OS=Drosophila melanogaster
           GN=l(3)70Da PE=2 SV=1
          Length = 1006

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 196 NLYKGLTSQATKNV--QNTKASATKESIMIKIELRTKTHRTTHAS 324
           NLYKGLT+  +  V  +NTK S +K +  +K EL  K    TH+S
Sbjct: 169 NLYKGLTNGTSNGVIEENTKLSRSKTTAQVKDELTEKLTPLTHSS 213


>tr|B3ND11|B3ND11_DROER GG15672 OS=Drosophila erecta GN=GG15672 PE=4
           SV=1
          Length = 1006

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 196 NLYKGLTSQATKNV--QNTKASATKESIMIKIELRTKTHRTTHAS 324
           NLYKGLT+  +  V  +NTK S +K +  +K EL  K    TH+S
Sbjct: 169 NLYKGLTNGTSNGVIEENTKLSRSKTTAQVKDELTQKPTPLTHSS 213


>tr|B4PI00|B4PI00_DROYA GE22001 OS=Drosophila yakuba GN=GE22001 PE=4
           SV=1
          Length = 1006

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +1

Query: 196 NLYKGLTSQATKNV--QNTKASATKESIMIKIELRTKTHRTTHAS 324
           NLYKGLT+  +  V  ++TK + +K +  +K EL  K    TH+S
Sbjct: 169 NLYKGLTNGTSNGVIEESTKLARSKTTAQVKDELTEKPTPLTHSS 213


>tr|A6RL80|A6RL80_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_01202
           PE=4 SV=1
          Length = 529

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 24/66 (36%), Positives = 34/66 (51%)
 Frame = -3

Query: 314 VVLCVFVRSSILIMMLSLVAEAFVFCTFFVAWEVSPL*RLRRG*YNYILGPCSGIYAKHV 135
           V+L   VR SILI  L ++   F FC+  V   VS L  LR     +++G C G +   +
Sbjct: 140 VILVTHVRPSILIPTLEVLWSIFTFCSAAVT-NVSQLYALR-----FLIGLCEGAFFPCI 193

Query: 134 I*VRGA 117
           I V G+
Sbjct: 194 IYVIGS 199