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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919811
Clone id YMU001_000129_D09
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTACAATTCAAACAGGCACATGTTGATATGAACAGCTTAACAATACAATCATGTC
AATTTACACATTCTAATGTATGCCTCCACGTCAAATTTGAAAATTTGCTCGACCACCAAA
CAATTGCCAAAATGGGAGATGCAGAGTTTGCTGACCTCCCTTACAATCCATACCAAACAT
TCTAAGAAATCCTATCCTTCGGGTGTGCTAGGCACACTAAACTTTCAGTTGGCAACACGG
TGCACCTCTTGCGACCTGAGTACAGGACAAACTCCTATGATCTACTATTCTGTGTAAGAA
GTATCAAACAAGGTGTGGCACACACAGAATATGTTGCTGGTGTTCCTGGCAGCCCACTAG
CATACCATGATTTTGACAAGCTCTTGTGGATATTGATGTGTTTTCCACAACACCATAAGG
CTTTAGCTTCGGCATCAGAGAAAGATCTTTACTCTCCACTTGTGATCACTCCGAATCGCT
GTCAAAGCTCTCCATTGCCTTCAAGCCCCTTGGTTTCTTCTTGCTACGCTTCTTTTCCCT
GATGTCGTATCGA
■■Homology search results ■■ -
sp_hit_id Q8CEQ0
Definition sp|Q8CEQ0|CDKL1_MOUSE Cyclin-dependent kinase-like 1 OS=Mus musculus
Align length 68
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919811|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D09.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CEQ0|CDKL1_MOUSE Cyclin-dependent kinase-like 1 OS=Mus musc...    32   1.6  
sp|Q00532|CDKL1_HUMAN Cyclin-dependent kinase-like 1 OS=Homo sap...    32   1.6  
sp|Q66HE7|CDKL1_RAT Cyclin-dependent kinase-like 1 OS=Rattus nor...    32   2.0  
sp|Q6AXJ9|CDKL1_DANRE Cyclin-dependent kinase-like 1 OS=Danio re...    32   2.7  
sp|Q6ZRU5|YQ032_HUMAN Putative uncharacterized protein FLJ46089 ...    31   4.6  

>sp|Q8CEQ0|CDKL1_MOUSE Cyclin-dependent kinase-like 1 OS=Mus
           musculus GN=Cdkl1 PE=2 SV=1
          Length = 352

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 45  TIQSCQFTHSNVCLH--VKFEN-LLDHQTIAKMGDAEFADLPYNPYQTF*EILSFGCARH 215
           T+Q+  F H + C+H  VK EN L+  Q+  K+ D  FA L   P   + + ++    R 
Sbjct: 110 TLQAVNFCHKHNCIHRDVKPENILITKQSAIKLCDFGFARLLTGPGDYYTDYVATRWYRS 169

Query: 216 TKLSVGNT 239
            +L VG+T
Sbjct: 170 PELLVGDT 177


>sp|Q00532|CDKL1_HUMAN Cyclin-dependent kinase-like 1 OS=Homo
           sapiens GN=CDKL1 PE=2 SV=4
          Length = 357

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 45  TIQSCQFTHSNVCLH--VKFEN-LLDHQTIAKMGDAEFADLPYNPYQTF*EILSFGCARH 215
           T+Q+  F H + C+H  VK EN L+   ++ K+ D  FA L   P   + + ++    R 
Sbjct: 110 TLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYTDYVATRWYRS 169

Query: 216 TKLSVGNT 239
            +L VG+T
Sbjct: 170 PELLVGDT 177


>sp|Q66HE7|CDKL1_RAT Cyclin-dependent kinase-like 1 OS=Rattus
           norvegicus GN=Cdkl1 PE=2 SV=1
          Length = 352

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 45  TIQSCQFTHSNVCLH--VKFEN-LLDHQTIAKMGDAEFADLPYNPYQTF*EILSFGCARH 215
           T+Q+  F H + C+H  VK EN L+   ++ K+ D  FA L   P   + + ++    R 
Sbjct: 110 TLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPGDYYTDYVATRWYRS 169

Query: 216 TKLSVGNT 239
            +L VG+T
Sbjct: 170 PELLVGDT 177


>sp|Q6AXJ9|CDKL1_DANRE Cyclin-dependent kinase-like 1 OS=Danio rerio
           GN=cdkl1 PE=2 SV=1
          Length = 350

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +3

Query: 45  TIQSCQFTHSNVCLH--VKFENLL--DHQTIAKMGDAEFADLPYNPYQTF*EILSFGCAR 212
           T+Q+  F H   C+H  VK EN+L   HQ I K+ D  FA +   P   + + ++    R
Sbjct: 110 TLQAVNFCHKQNCIHRDVKPENILITKHQVI-KLCDFGFARILTGPCDYYTDCVATRWYR 168

Query: 213 HTKLSVGNT 239
             +L VG+T
Sbjct: 169 APELLVGDT 177


>sp|Q6ZRU5|YQ032_HUMAN Putative uncharacterized protein FLJ46089
           OS=Homo sapiens PE=2 SV=2
          Length = 148

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 290 LCKKYQTRCGTHRICCWCSW 349
           +CK+  TR GT+ + CWCSW
Sbjct: 29  VCKQVCTRVGTYAV-CWCSW 47
tr_hit_id A6QLF0
Definition tr|A6QLF0|A6QLF0_BOVIN CDKL1 protein OS=Bos taurus
Align length 68
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919811|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_D09.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6QLF0|A6QLF0_BOVIN CDKL1 protein OS=Bos taurus GN=CDKL1 PE=2...    35   3.4  
tr|Q0K751|Q0K751_RALEH Ion transport protein, VIC superfamily OS...    33   7.8  
tr|O29639|O29639_ARCFU Putative uncharacterized protein OS=Archa...    33   10.0 

>tr|A6QLF0|A6QLF0_BOVIN CDKL1 protein OS=Bos taurus GN=CDKL1 PE=2
           SV=1
          Length = 352

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +3

Query: 45  TIQSCQFTHSNVCLH--VKFENLL-DHQTIAKMGDAEFADLPYNPYQTF*EILSFGCARH 215
           T+Q+  F H + C+H  VK EN+L   Q++ K+ D  FA L   P   + + ++    R 
Sbjct: 110 TLQAVNFCHKHSCIHRDVKPENILVTKQSVIKLCDFGFARLLTGPSDYYTDYVATRWYRS 169

Query: 216 TKLSVGNT 239
            +L VG+T
Sbjct: 170 PELLVGDT 177


>tr|Q0K751|Q0K751_RALEH Ion transport protein, VIC superfamily
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=kch PE=4 SV=1
          Length = 305

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 46  QYNHVNLHILMYASTSNLKICSTTKQLPKWEMQSLLTSLTIHTKHSKKSYPSGVLGT--- 216
           Q+   ++ + MY +   L        +PK  +   +TSLTI   +   ++P+G++G    
Sbjct: 194 QHGFTSIPVSMYWAVVTLTTTGFGDMVPKTPLGQFITSLTILLGYGIIAFPTGIVGAELA 253

Query: 217 ---LNFQLATR-CTSCDLSTGQTP 276
              L   L TR CT C L+ G  P
Sbjct: 254 ASILKRPLTTRTCTHC-LTEGHEP 276


>tr|O29639|O29639_ARCFU Putative uncharacterized protein
           OS=Archaeoglobus fulgidus GN=AF_0616 PE=4 SV=1
          Length = 533

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 303 IKQGVAHTEYVAGVPGSPLAYHDFDKLLWILMCFPQHHKALASASEKDLY 452
           +K+G     Y     G     H+FDK+ +I++  P+ HK +    EK LY
Sbjct: 454 LKEGYKFAIYNGVYIGYEAFVHNFDKITYIILIEPREHKGVYGDIEKKLY 503