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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919816
Clone id YMU001_000129_E02
Library
Length 522
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAATACTCGTGTATCACGGTGTGAAAAAGACATCAGACCCCAACACTGCACCATTGTCAA
AACATCCTTTCTCAGAAGGGCTCCCCAATGAGACCTTTAATATCCAACAAAACATAAACT
TTCCACCAAACCATACAAGGAACTCACCCATTCAAAACACAAACTTGCCAAGAAGCAACG
AGAACATGAGGAACCATGGCATCACTCCATAAGGTAAGCCTCACCGACTCCAACACTGAA
ACCTCTTTAAACCTTGTAGCTTCATGTAGGAGCTGCATCTAGACAGCCGGCCACCTACAC
TTCCTTGTAAGCAGAGATACAAGGTGGCACTTCTAGTTGGTATTACACAACACTTTCATG
CATTCAGCCAGCCTCTCCTTAGATAATCTTGTTTCTAATATCTTCCAGTTTTTTCAAAAT
CTCTCCAGGTGTACGTTCCAGCTCATCTGCAATTTTTCTCTGCAGATCTGGTGCAAGAGT
AGGGTACTGCTCACATAAATCGCCATCAATAACGTCCTTAAC
■■Homology search results ■■ -
sp_hit_id Q5RBI5
Definition sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii
Align length 45
Score (bit) 62.4
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919816|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E02.
         (522 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abel...    62   1e-09
sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus muscul...    62   2e-09
sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapie...    62   2e-09
sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus...    62   2e-09
sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio reri...    61   4e-09
sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=D...    57   5e-08
sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago m...    53   1e-06
sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor rse1 OS=Schizosacc...    51   3e-06
sp|Q52E49|RSE1_MAGGR Pre-mRNA-splicing factor RSE1 OS=Magnaporth...    49   1e-05
sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospor...    48   3e-05
sp|Q5KP25|RSE1_CRYNE Pre-mRNA-splicing factor RSE1 OS=Cryptococc...    47   7e-05
sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyc...    44   4e-04
sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella...    43   8e-04
sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Aspergillu...    40   0.005
sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida al...    37   0.044
sp|Q75D66|CARB_ASHGO Carbamoyl-phosphate synthase arginine-speci...    36   0.13 
sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gos...    33   1.1  
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost...    32   1.4  
sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida gl...    32   1.4  
sp|Q54XQ2|RCKA_DICDI RGS domain-containing serine/threonine-prot...    32   1.8  
sp|Q54W36|DHKH_DICDI Hybrid signal transduction histidine kinase...    31   4.0  
sp|Q14004|CD2L5_HUMAN Cell division cycle 2-like protein kinase ...    30   5.3  
sp|A4FXC7|SURE_METM5 5'-nucleotidase surE OS=Methanococcus marip...    30   6.9  
sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomy...    30   7.0  

>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii
            GN=SF3B3 PE=2 SV=1
          Length = 1217

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK+VIDGDLCEQ+ ++ P+ Q+ +++EL+RTP E+ KKLEDIR +
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVTKKLEDIRTR 1214


>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus
            GN=Sf3b3 PE=2 SV=1
          Length = 1217

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK+VIDGDLCEQ+ ++ P+ Q+ +++EL+RTP E+ KKLEDIR +
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214


>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens
            GN=SF3B3 PE=1 SV=4
          Length = 1217

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK+VIDGDLCEQ+ ++ P+ Q+ +++EL+RTP E+ KKLEDIR +
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214


>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus
            GN=SF3B3 PE=2 SV=1
          Length = 1217

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 26/45 (57%), Positives = 38/45 (84%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK+VIDGDLCEQ+ ++ P+ Q+ +++EL+RTP E+ KKLEDIR +
Sbjct: 1170 VKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTR 1214


>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio
            GN=sf3b3 PE=2 SV=1
          Length = 1217

 Score = 60.8 bits (146), Expect = 4e-09
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK+VIDGDLCEQ+ ++ P  Q+ +++EL+RTP E+ KKLEDIR +
Sbjct: 1170 VKNVIDGDLCEQFNSMDPHKQKSVSEELDRTPPEVSKKLEDIRTR 1214


>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3
            OS=Dictyostelium discoideum GN=sf3b3 PE=3 SV=1
          Length = 1256

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 25/45 (55%), Positives = 36/45 (80%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK++IDGDLCEQ+ TL    Q  I++EL R+P E++KKLE+IR++
Sbjct: 1209 VKNIIDGDLCEQFSTLNYQKQLSISEELSRSPSEVIKKLEEIRSQ 1253


>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis
            GN=RSE1 PE=3 SV=1
          Length = 1221

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIR 394
            VK VIDGDLCE +  L+P  Q  IA EL+R PGEI KKL  +R
Sbjct: 1173 VKSVIDGDLCETFGLLSPAKQNAIAGELDRKPGEINKKLAQLR 1215


>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor rse1
            OS=Schizosaccharomyces pombe GN=prp12 PE=1 SV=1
          Length = 1206

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 25/43 (58%), Positives = 31/43 (72%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIR 394
            VK VIDGDLCE Y +L   +Q  IA+EL+RT  E+ KK+ED R
Sbjct: 1160 VKCVIDGDLCEMYYSLPHPVQEMIANELDRTIAEVSKKIEDFR 1202


>sp|Q52E49|RSE1_MAGGR Pre-mRNA-splicing factor RSE1 OS=Magnaporthe
            grisea GN=RSE1 PE=3 SV=2
          Length = 1216

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 24/45 (53%), Positives = 32/45 (71%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK VIDGDLCE+Y  L  D ++ IA EL+R+  EI +K+ DIR +
Sbjct: 1169 VKGVIDGDLCERYTMLPNDKKQMIAGELDRSVREIERKISDIRTR 1213


>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora
            crassa GN=rse-1 PE=3 SV=2
          Length = 1209

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 23/45 (51%), Positives = 32/45 (71%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNK 388
            VK VIDGDLCE++  L  D ++ IA EL+R+  EI +K+ DIR +
Sbjct: 1162 VKGVIDGDLCERFSLLPNDKKQMIAGELDRSVREIERKISDIRTR 1206
tr_hit_id B4FNJ3
Definition tr|B4FNJ3|B4FNJ3_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 47
Score (bit) 88.6
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919816|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E02.
         (522 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4FNJ3|B4FNJ3_MAIZE Putative uncharacterized protein OS=Zea m...    89   2e-16
tr|Q6YXY3|Q6YXY3_ORYSJ Putative splicing factor 3b, subunit 3, 1...    87   5e-16
tr|Q0E445|Q0E445_ORYSJ Os02g0137400 protein (Fragment) OS=Oryza ...    87   5e-16
tr|A4Q7M2|A4Q7M2_MEDTR CPSF A subunit, C-terminal; WD40-like OS=...    87   5e-16
tr|A3A2Y3|A3A2Y3_ORYSJ Putative uncharacterized protein OS=Oryza...    87   5e-16
tr|A2X0N5|A2X0N5_ORYSI Putative uncharacterized protein OS=Oryza...    87   5e-16
tr|A7Q438|A7Q438_VITVI Chromosome chr13 scaffold_48, whole genom...    87   7e-16
tr|A5AK38|A5AK38_VITVI Putative uncharacterized protein OS=Vitis...    87   7e-16
tr|Q9LD60|Q9LD60_ARATH Spliceosomal-like protein OS=Arabidopsis ...    85   3e-15
tr|Q570A5|Q570A5_ARATH Spliceosomal-like protein (Fragment) OS=A...    85   3e-15
tr|A9TB22|A9TB22_PHYPA Predicted protein OS=Physcomitrella paten...    85   3e-15
tr|A9TZV4|A9TZV4_PHYPA Predicted protein OS=Physcomitrella paten...    83   1e-14
tr|A9T9F4|A9T9F4_PHYPA Predicted protein OS=Physcomitrella paten...    80   8e-14
tr|Q2HWB0|Q2HWB0_MEDTR CPSF A subunit, C-terminal; WD40-like OS=...    74   6e-12
tr|Q8I574|Q8I574_PLAF7 Splicing factor 3b, subunit 3, 130kD, put...    70   8e-11
tr|Q4Y124|Q4Y124_PLACH Putative uncharacterized protein (Fragmen...    70   8e-11
tr|Q4XAR7|Q4XAR7_PLACH Putative uncharacterized protein (Fragmen...    70   8e-11
tr|B3LCZ1|B3LCZ1_PLAKH Splicing factor 3b, subunit 3, 130kd, put...    70   8e-11
tr|A5K8L1|A5K8L1_PLAVI Splicing factor 3B subunit 3, putative OS...    69   1e-10
tr|Q017C4|Q017C4_OSTTA Spliceosomal-like protein (ISS) OS=Ostreo...    69   1e-10
tr|A4RYT7|A4RYT7_OSTLU Predicted protein OS=Ostreococcus lucimar...    68   2e-10
tr|Q7RIV2|Q7RIV2_PLAYO Drosophila melanogaster CG13900 gene prod...    67   5e-10
tr|Q4Z2W9|Q4Z2W9_PLABE Splicing factor 3b, subunit 3, 130kD, put...    67   5e-10
tr|Q4YDB2|Q4YDB2_PLABE Putative uncharacterized protein (Fragmen...    67   5e-10
tr|B6NA16|B6NA16_BRAFL Putative uncharacterized protein OS=Branc...    64   6e-09
tr|Q5ZI54|Q5ZI54_CHICK Putative uncharacterized protein OS=Gallu...    63   8e-09
tr|A0CSI5|A0CSI5_PARTE Chromosome undetermined scaffold_26, whol...    63   8e-09
tr|Q4T683|Q4T683_TETNG Chromosome undetermined SCAF8882, whole g...    62   1e-08
tr|B7PXI3|B7PXI3_IXOSC Spliceosomal protein sap, putative (Fragm...    62   1e-08
tr|Q20AI1|Q20AI1_ICTPU Splicing factor 3b subunit 3 (Fragment) O...    62   2e-08

>tr|B4FNJ3|B4FNJ3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 173

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = -1

Query: 522 VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
           VKDVIDGDLCEQYP+L  D+QRKIADEL+RTPGEILKKLEDIRNKII
Sbjct: 127 VKDVIDGDLCEQYPSLPADMQRKIADELDRTPGEILKKLEDIRNKII 173


>tr|Q6YXY3|Q6YXY3_ORYSJ Putative splicing factor 3b, subunit 3, 130kDa
            OS=Oryza sativa subsp. japonica GN=OSJNBa0026E05.6 PE=4
            SV=1
          Length = 1234

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+P+L  D+QRKIADEL+RTPGEILKKLEDIRNKII
Sbjct: 1188 VKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNKII 1234


>tr|Q0E445|Q0E445_ORYSJ Os02g0137400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os02g0137400 PE=4 SV=1
          Length = 858

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522 VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
           VKDVIDGDLCEQ+P+L  D+QRKIADEL+RTPGEILKKLEDIRNKII
Sbjct: 812 VKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNKII 858


>tr|A4Q7M2|A4Q7M2_MEDTR CPSF A subunit, C-terminal; WD40-like
            OS=Medicago truncatula GN=MtrDRAFT_AC182813g2v2 PE=4 SV=1
          Length = 1225

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+PTL  DLQRKIADEL+RTPGEILKKLE++RNKII
Sbjct: 1179 VKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEILKKLEEVRNKII 1225


>tr|A3A2Y3|A3A2Y3_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_005155 PE=4 SV=1
          Length = 1224

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+P+L  D+QRKIADEL+RTPGEILKKLEDIRNKII
Sbjct: 1178 VKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNKII 1224


>tr|A2X0N5|A2X0N5_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_05771 PE=4 SV=1
          Length = 1234

 Score = 87.0 bits (214), Expect = 5e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+P+L  D+QRKIADEL+RTPGEILKKLEDIRNKII
Sbjct: 1188 VKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDIRNKII 1234


>tr|A7Q438|A7Q438_VITVI Chromosome chr13 scaffold_48, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00029524001
            PE=4 SV=1
          Length = 1201

 Score = 86.7 bits (213), Expect = 7e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+PTL  DLQRKIADEL+RTPGEILKKLE++RNKII
Sbjct: 1155 VKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGEILKKLEEVRNKII 1201


>tr|A5AK38|A5AK38_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_043788 PE=4 SV=1
          Length = 1143

 Score = 86.7 bits (213), Expect = 7e-16
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+PTL  DLQRKIADEL+RTPGEILKKLE++RNKII
Sbjct: 1097 VKDVIDGDLCEQFPTLPLDLQRKIADELDRTPGEILKKLEEVRNKII 1143


>tr|Q9LD60|Q9LD60_ARATH Spliceosomal-like protein OS=Arabidopsis
            thaliana GN=T26I12.100 PE=4 SV=1
          Length = 1214

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 41/47 (87%), Positives = 43/47 (91%)
 Frame = -1

Query: 522  VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
            VKDVIDGDLCEQ+PTL  DLQRKIADEL+RTP EILKKLED RNKII
Sbjct: 1168 VKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII 1214


>tr|Q570A5|Q570A5_ARATH Spliceosomal-like protein (Fragment)
           OS=Arabidopsis thaliana GN=At3g55220 PE=2 SV=1
          Length = 165

 Score = 84.7 bits (208), Expect = 3e-15
 Identities = 41/47 (87%), Positives = 43/47 (91%)
 Frame = -1

Query: 522 VKDVIDGDLCEQYPTLAPDLQRKIADELERTPGEILKKLEDIRNKII 382
           VKDVIDGDLCEQ+PTL  DLQRKIADEL+RTP EILKKLED RNKII
Sbjct: 119 VKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII 165