NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919817
Clone id YMU001_000129_E04
Library
Length 502
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACAACAAATGCTTTTCAATTTGCAAAAGCCTTTCAATGATGTTATCTACATGAAACCTT
TCAAGCAATATACAGTAACTGTCTTTCTTCCCTCCTATTCTGCTTTTAGTTTCCTTATTT
TTCTGATTCGCTCCTTCCATAGCCACCTTTGGTATCTCGAACATTGCCCCTACAACAAAC
CTCCCATTTTTGTGCTTCTGCTCACTCATGAGGAGAGAACTGGCTTCCAGCACCCTGGAG
GTCAGACAGGGAATAGGACCTCGGAGTTTTCAACATTCCGGAAGGACAATTAAAGTGCCT
CCCTTGTTTACCTACCTTGGCACTTACCACTCCAGAAAATGCTGGTGTGTATTTGAATCT
ATGAAAATTTTTCCTTGATATTCCAACAGCCCCGGTCCGCAGTGGACGCGTATGTAATCT
GTCAGAATTACCAATGCATGCTGAGATATATTTCCTTTTTTTGGTGTAAGGGTTCTCAGG
TTTAGCAAGTTCTTCTACAGAA
■■Homology search results ■■ -
sp_hit_id P44469
Definition sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus influenzae
Align length 77
Score (bit) 31.2
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919817|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E04.
         (502 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus...    31   2.8  
sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 O...    31   3.7  
sp|Q11NR0|RISB_CYTH3 6,7-dimethyl-8-ribityllumazine synthase OS=...    30   4.8  
sp|P46974|ZMS1_YEAST Zinc finger protein ZMS1 OS=Saccharomyces c...    30   4.9  

>sp|P44469|PBP2_HAEIN Penicillin-binding protein 2 OS=Haemophilus
           influenzae GN=mrdA PE=3 SV=1
          Length = 651

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 24  QKPFNDVIYMKPFKQYTVTVFLPSYSAFSFLIFLIRSFHSHLWYLEHCPYNKPPIFVLLL 203
           +K F D  Y    K  T  VF    +       L +  H H W+  + PY+ P + V ++
Sbjct: 539 RKAFADANYRVAGKSGTAQVFSLKENEKYNTAGLKKELHDHAWFTAYAPYDNPKLVVTVI 598

Query: 204 THEERTGFQHPGGQTGN 254
                   ++ GG + N
Sbjct: 599 -------LENAGGGSSN 608


>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47
           OS=Homo sapiens GN=USP47 PE=1 SV=2
          Length = 1375

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +3

Query: 141 SHLWYLEHCPYNKPPIFVLL-----LTHEERTGFQHPGGQTGN 254
           SHLW L     N   +FVLL     +++ +RT +Q  GG +GN
Sbjct: 809 SHLWKLLDRHANTIRLFVLLPEQSPVSYSKRTAYQKAGGDSGN 851


>sp|Q11NR0|RISB_CYTH3 6,7-dimethyl-8-ribityllumazine synthase
           OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB
           9469) GN=ribH PE=3 SV=1
          Length = 159

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 YNKPPIFVLLLTHEERTGFQHPGGQTGNRTSE 266
           +NKP IF +L T  +   F   GG+ GN+  E
Sbjct: 115 FNKPVIFGVLTTDNKEQAFDRAGGKHGNKGDE 146


>sp|P46974|ZMS1_YEAST Zinc finger protein ZMS1 OS=Saccharomyces
           cerevisiae GN=ZMS1 PE=1 SV=1
          Length = 1380

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -2

Query: 447 ISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVVSAKVGKQGRHFNCPSGMLK 268
           +SA + N  R  T P + G++G     F  FK++     V SA         N PS M K
Sbjct: 284 VSAPVMNDKREKTPPSKAGSLG-----FREFKFSTKGVPVHSASSDAVIDRANTPSSMHK 338

Query: 267 TPRSYSL---SDLQGAGSQFSPH 208
           T R  S    S +    S  SPH
Sbjct: 339 TKRHASFSASSAMTYMSSSNSPH 361
tr_hit_id A9NU37
Definition tr|A9NU37|A9NU37_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 101
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919817|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E04.
         (502 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NU37|A9NU37_PICSI Putative uncharacterized protein OS=Picea...    57   5e-07
tr|A9NS00|A9NS00_PICSI Putative uncharacterized protein OS=Picea...    56   8e-07
tr|A5AQ22|A5AQ22_VITVI Putative uncharacterized protein OS=Vitis...    43   0.007
tr|A7PDX2|A7PDX2_VITVI Chromosome chr11 scaffold_13, whole genom...    43   0.010
tr|Q9LLM3|Q9LLM3_MEDTR MTD1 OS=Medicago truncatula PE=2 SV=1           37   0.53 
tr|B7FGG0|B7FGG0_MEDTR Putative uncharacterized protein OS=Medic...    37   0.53 
tr|P72557|P72557_SYNE7 ANL19 OS=Synechococcus elongatus (strain ...    36   0.90 
tr|A7P4U4|A7P4U4_VITVI Chromosome chr4 scaffold_6, whole genome ...    36   1.2  
tr|A5B5R8|A5B5R8_VITVI Putative uncharacterized protein OS=Vitis...    36   1.2  
tr|A9PBN9|A9PBN9_POPTR Putative uncharacterized protein OS=Popul...    34   4.5  
tr|Q65RH1|Q65RH1_MANSM FtsI protein OS=Mannheimia succiniciprodu...    33   7.4  
tr|B2V6L8|B2V6L8_SULSY Penicillin-binding protein 2 OS=Sulfurihy...    33   7.4  
tr|O01260|O01260_CAEEL Protein T20D3.11, partially confirmed by ...    33   7.4  
tr|B0ETM9|B0ETM9_ENTDI DNA repair protein xp-E, putative OS=Enta...    33   7.4  
tr|Q0I1H2|Q0I1H2_HAES1 Peptidoglycan glycosyltransferase OS=Haem...    33   9.7  
tr|B0UVQ2|B0UVQ2_HAES2 Peptidoglycan glycosyltransferase OS=Haem...    33   9.7  
tr|A4N3G9|A4N3G9_HAEIN Penicillin-binding protein 2 OS=Haemophil...    33   9.7  
tr|Q4RYF5|Q4RYF5_TETNG Chromosome 2 SCAF14976, whole genome shot...    33   9.9  

>tr|A9NU37|A9NU37_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 322

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVVS 322
           SV++LAKPENPY K+R+ + A   + +R    P R G  GIS+K  H  K T A +  +S
Sbjct: 221 SVKDLAKPENPYNKRRRNLLAYGNSWERNRFHPPRNGNAGISKKAIHTSKSTLALAVAMS 280

Query: 321 AKVGKQGRHFN-------CPSGM----LKTPRSYSLSDLQG 232
                  +  N        P G       +PRS+SL+DLQG
Sbjct: 281 KSEDSLEKDENDAHLPPLPPQGRWQRNFASPRSFSLTDLQG 321


>tr|A9NS00|A9NS00_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 250

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 29/59 (49%), Positives = 37/59 (62%)
 Frame = -2

Query: 498 VEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVVS 322
           V++LAKPENPY KKR+++ AC  N DR    P RT   GIS+K  H  K T A +  +S
Sbjct: 134 VKDLAKPENPYNKKRRHLLACGNNWDRHRFCPPRTNIAGISKKPMHSSKSTLALAIAMS 192


>tr|A5AQ22|A5AQ22_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006434 PE=4 SV=1
          Length = 275

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVV- 325
           SV++LAKPEN Y KKRK + A     D+    P R+ A GIS++     + T A +  + 
Sbjct: 128 SVKDLAKPENAYAKKRKNLLAYSNFWDKNRNCPWRSNAGGISKRPLISSRSTLALAVTMS 187

Query: 324 SAKVGKQGRHFNCPSGMLKTPRSYSLSDL 238
           S++ G      NC S  L +  S SL  L
Sbjct: 188 SSESGNYCXDSNCSSN-LSSSHSPSLPPL 215


>tr|A7PDX2|A7PDX2_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016447001
           PE=4 SV=1
          Length = 275

 Score = 42.7 bits (99), Expect = 0.010
 Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVV- 325
           SV++LAKPEN Y KKRK + A     D+    P R+ A GIS++     + T A +  + 
Sbjct: 128 SVKDLAKPENAYAKKRKNLLAYSNFWDKNRNCPWRSNAGGISKRPLISSRSTLALAVTMS 187

Query: 324 SAKVGKQGRHFNCPSGMLKTPRSYSLSDL 238
           S++ G      NC S  L +  S SL  L
Sbjct: 188 SSESGNYCDDSNCSSN-LSSSHSPSLPPL 215


>tr|Q9LLM3|Q9LLM3_MEDTR MTD1 OS=Medicago truncatula PE=2 SV=1
          Length = 231

 Score = 37.0 bits (84), Expect = 0.53
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRK 370
           SV+++ KPEN YT++R+ + A     D+    PLR+ + GIS++
Sbjct: 111 SVKDIVKPENAYTRRRRNLLAFNHGWDKNKNFPLRSNSGGISKR 154


>tr|B7FGG0|B7FGG0_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 248

 Score = 37.0 bits (84), Expect = 0.53
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRK 370
           SV+++ KPEN YT++R+ + A     D+    PLR+ + GIS++
Sbjct: 111 SVKDIVKPENAYTRRRRNLLAFNHGWDKNKNFPLRSNSGGISKR 154


>tr|P72557|P72557_SYNE7 ANL19 OS=Synechococcus elongatus (strain PCC
           7942) GN=Synpcc7942_B2644 PE=4 SV=1
          Length = 235

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -2

Query: 495 EELAKPENPYTKKRKYISACIGNS-DRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVVSA 319
           EEL  PE  + +   Y   C  +  + + T PL      I   NF R  + PAF+ +  A
Sbjct: 88  EELVLPEGTWKQSELYQRCCSTHDHEHIMTGPLVGQGQLIGTINFARIGHIPAFNHLELA 147

Query: 318 KVGKQGRHFNCPSGMLKTPRSYS 250
            +G    HF+     L+ P S S
Sbjct: 148 SLGAVCTHFSARLAELRKPHSVS 170


>tr|A7P4U4|A7P4U4_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032286001
           PE=4 SV=1
          Length = 208

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRK 370
           S ++LAKPEN Y ++R+ + A     D+    PLR+   GIS+K
Sbjct: 59  SCKDLAKPENAYNRRRRNLLAYNHVLDKNRNFPLRSNGGGISKK 102


>tr|A5B5R8|A5B5R8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008557 PE=4 SV=1
          Length = 281

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRK 370
           S ++LAKPEN Y ++R+ + A     D+    PLR+   GIS+K
Sbjct: 132 SCKDLAKPENAYNRRRRNLLAYNHVLDKNRNFPLRSNGGGISKK 175


>tr|A9PBN9|A9PBN9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 239

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = -2

Query: 501 SVEELAKPENPYTKKRKYISACIGNSDRLHTRPLRTGAVGISRKNFHRFKYTPAFSGVVS 322
           S++++AKPEN YT+KR+ + A     ++  + P R+   GI+++     K T A +  +S
Sbjct: 111 SIKDIAKPENAYTRKRRNLLAFSHVWEKTRSFPYRS---GIAKRPISNSKSTLALAVAMS 167

Query: 321 A 319
           +
Sbjct: 168 S 168