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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919825
Clone id YMU001_000129_E12
Library
Length 533
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGCAGTAGAAATCGGCAAGTCGATGAATTTCTTTCTCTAGTTGTTTGTTTTATCCGCGG
GCTTGTTGTTGGTGGGCATCCGCTGGCGTGTATATATGTGCACTCTCTCTGCATACGCCT
CGCAGAGACAAATTTGCATGCCACTAACCCGGGCAGATTTCTTGGCTCCAAGAAGTGGTT
GAAACTGCCTGCGTTACGTCTTCTGTGAGCCTGCTGCTCCACAATTCCAAGCTTGCTTTT
TGCAATTCAGCCTGATTTCTTGTTTTGGGTGCCCGTCAAGAAGATTTTAGGGTGCTTAGC
CGCAAATTAAGCAGTTGACGCAACCAAAATTACGAAATTTGGCAGGATTTGGGCTTCGCT
TGCCTAAGAACAGGCTCCGACATGGTAAGAATCTGCATTCTTGGCTCATGAAGAAGGTAG
AGACATGGGCTGCGGTTTTAGCAGGCACGAAGTGGCAGAGGAGCCTTTACCCAGCCCCAA
AAGCAGGTCATCGCGTCACTCGTCCTCGACGAGTACCTGCAGGTAATATCTCA
■■Homology search results ■■ -
sp_hit_id Q2II25
Definition sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
Align length 37
Score (bit) 30.4
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919825|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E12.
         (533 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter ...    30   5.6  
sp|P56400|GP1BB_MOUSE Platelet glycoprotein Ib beta chain OS=Mus...    30   7.3  
sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficienc...    30   9.5  
sp|Q04G42|PGK_OENOB Phosphoglycerate kinase OS=Oenococcus oeni (...    30   9.5  
sp|Q7NI70|PGK_GLOVI Phosphoglycerate kinase OS=Gloeobacter viola...    30   9.5  
sp|P18817|LACY_KLEOX Lactose permease OS=Klebsiella oxytoca GN=l...    30   9.5  
sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency vi...    30   9.5  

>sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter
           dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1
          Length = 396

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVACK 133
           A  + G+V++  H     G+   F+E R LPG+ AC+
Sbjct: 359 AVEQAGLVDKMKHVSTGGGASLEFIEGRELPGVKACE 395


>sp|P56400|GP1BB_MOUSE Platelet glycoprotein Ib beta chain OS=Mus
           musculus GN=Gp1bb PE=1 SV=1
          Length = 206

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 448 VPAKTAAHVSTFFMSQECRFLPCRSLFLGKRSPNPAKFRNFGCV 317
           +PA  AAH+       +CR LP R+   G+  P  A +R+  CV
Sbjct: 78  LPALRAAHLGANPWRCDCRLLPLRAWLAGR--PERAPYRDLRCV 119


>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency
           virus type 1 (isolate ANT70 group O) GN=gag-pol PE=3
           SV=3
          Length = 1435

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 361 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426


>sp|Q04G42|PGK_OENOB Phosphoglycerate kinase OS=Oenococcus oeni
           (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1
          Length = 404

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 243 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVA 139
           A S+LGI +Q  H     G+   +LE + LPG+ A
Sbjct: 366 AVSQLGIADQFTHISTGGGASLEYLEGKTLPGIAA 400


>sp|Q7NI70|PGK_GLOVI Phosphoglycerate kinase OS=Gloeobacter
           violaceus GN=pgk PE=3 SV=1
          Length = 407

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -3

Query: 345 LPNFVILVASTA*FAAKHPKIFLTGTQNKKSG*IAKSKLGIVEQQAHRRRNAGSFNHFLE 166
           LP F     + A   A+   + + G  +  S   A  K G+V++ +H     G+   FLE
Sbjct: 338 LPGFSKGTFAVAHALAESDNLSIVGGGDSAS---AAEKAGVVDKLSHVSTGGGASLEFLE 394

Query: 165 PRNLPGLVA 139
            + LPG+ A
Sbjct: 395 GKTLPGVAA 403


>sp|P18817|LACY_KLEOX Lactose permease OS=Klebsiella oxytoca GN=lacY
           PE=3 SV=2
          Length = 416

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +2

Query: 59  GLVVGGHPLACIY------VHSLCIRLAETNLHATNPGRFLGSKKWLKLPALRLL*ACCS 220
           G +VGG  L  ++      V +   R++  N       R  G   W          A C+
Sbjct: 111 GALVGGVYLGIVFSSRSGAVEAYIERVSRANRFEYGKVRVSGCVGW----------ALCA 160

Query: 221 TIPSLLFAIQPDFLFWV 271
           +I  +LF+I P+  FW+
Sbjct: 161 SITGILFSIDPNITFWI 177


>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus
           type 1 (isolate ANT70 group O) GN=gag PE=3 SV=3
          Length = 498

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 361 KRSPNPAKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           +R  NP +    G + C  CG       +GH  +  R   KK  W CG  G Q
Sbjct: 383 QRGQNPIRK---GTIKCFNCG------KEGHIARNCRAPRKKGCWKCGQEGHQ 426
tr_hit_id Q47CW6
Definition tr|Q47CW6|Q47CW6_DECAR Molybdopterin oxidoreductase:Molydopterin dinucleotide-binding region OS=Dechloromonas aromatica (strain RCB)
Align length 46
Score (bit) 34.7
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919825|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_E12.
         (533 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q47CW6|Q47CW6_DECAR Molybdopterin oxidoreductase:Molydopterin...    35   3.2  
tr|Q21T50|Q21T50_RHOFD Sensor protein OS=Rhodoferax ferrireducen...    34   4.1  
tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human immun...    33   7.0  
tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency...    33   7.0  

>tr|Q47CW6|Q47CW6_DECAR Molybdopterin oxidoreductase:Molydopterin
           dinucleotide-binding region OS=Dechloromonas aromatica
           (strain RCB) GN=Daro_2584 PE=3 SV=1
          Length = 927

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = -3

Query: 198 RNAGSFNHFL---EPRNLPGLVACKFVSARRMQREC-----TYIHA 85
           +N G  NH++   +P  LPGLVA  F      QR C     TYIHA
Sbjct: 477 KNGGGLNHYIGQWKPTFLPGLVALAFPEGPAKQRFCQTTIWTYIHA 522


>tr|Q21T50|Q21T50_RHOFD Sensor protein OS=Rhodoferax ferrireducens
           (strain DSM 15236 / ATCC BAA-621 / T118) GN=Rfer_3344
           PE=4 SV=1
          Length = 584

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -2

Query: 247 NCKKQAWNCGAAGSQKT*RRQFQPLLGAKKSARVSGMQIC--LCEAYAERVHIYTRQRMP 74
           +C    W+ G    Q   R  F+P   ++  +   G+ IC  LCE +   +  Y R R  
Sbjct: 485 HCTLSVWSDGQPMDQSVERHLFEPFFSSESRSSGLGLYICRELCEGHGATI-AYDRTRRT 543

Query: 73  TNNKPAD 53
              KP D
Sbjct: 544 MTGKPVD 550


>tr|Q8QDY9|Q8QDY9_9HIV1 Gag polyprotein (Fragment) OS=Human
           immunodeficiency virus 1 GN=gag PE=4 SV=1
          Length = 219

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 343 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 101 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 141


>tr|Q8QDX0|Q8QDX0_9HIV1 Gag polyprotein OS=Human immunodeficiency
           virus 1 GN=gag PE=4 SV=1
          Length = 498

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 343 AKFRNFGCVNCLICG*AP*NLLDGHPKQEIRLNCKKQAWNCGAAGSQ 203
           + FR    + C  CG       DGHP +  R   KK  W CG  G Q
Sbjct: 380 SNFRGPKRIKCFNCG------KDGHPARNCRAPRKKGCWKCGKEGHQ 420