BP919828
Clone id YMU001_000129_F03
Library
Length 538
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GGGAGAATTCGCGGCCGCATTATTAGTTCCTGTCTTCCTTGCCTTCCACGGAGCCAGCTG
CACATCCATATATACGTTTCCGGTAGACGCCATCCCTCGAGACAGCTGGATCCGCAAGCT
TTCGCTTCCGGTGGACGCGATCCATAGAGACCATTTCACCCACATACTTATTTTGAGCAG
CAGCAGATAAGGAGGGTGCCTTTGGCTTTCGTTTGGCTGCTTCCTTAAAATCACTATCAG
AACTCTCATTGTATTCGTAGTCCTCATCTTCACTGTCCACAAGGTCTTGAACACACGCTG
CTGCTGTTGTGGTGGGGGCTGGTACTTGTGCCAGCCCGCCTCTGCCAGTATCCTTTTGTT
TTGTTGGAGTGCTCAAAGGAGCCCTCCCCGGTCTTTTCTTTGAAAGCTGTCTCCCATCGT
ACTCTTCCTGCGCCTCCTCCAGCTCTTGAACATCCAGCTGATTCTCAAGAGCTTCCAGGT
CTCTAATCCAAAGTGACTTTGGAGTCGCACGTCTAAGCTCCTCCACACTAGCTTCCAA
■■Homology search results ■■ -
sp_hit_id P15348
Definition sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster
Align length 67
Score (bit) 42.7
E-value 0.001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919828|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F03.
(518 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogas... 43 0.001
sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana... 42 0.002
sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces ... 35 0.16
sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegic... 35 0.21
sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=T... 35 0.27
sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus... 34 0.47
sp|Q9Y8G8|TOP2_PENCH DNA topoisomerase 2 OS=Penicillium chrysoge... 32 1.4
sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens ... 32 1.8
sp|P33485|VNUA_SUHVK Probable nuclear antigen OS=Suid herpesviru... 32 2.3
sp|O24308|TOP2_PEA DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 ... 32 2.3
sp|P41001|TOP2_PLAFK DNA topoisomerase 2 OS=Plasmodium falciparu... 31 3.0
sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta OS=Mus musculus G... 31 3.0
sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta OS=Homo sapiens G... 31 3.0
sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta OS=Cricetulus lon... 31 3.0
sp|Q01320|TOP2A_MOUSE DNA topoisomerase 2-alpha OS=Mus musculus ... 31 3.0
sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus gr... 31 4.0
sp|P21438|MYC_FLVTT Viral myc transforming protein OS=Feline leu... 31 4.0
sp|Q11102|TG278_CAEEL Putative protein tag-278 OS=Caenorhabditis... 30 5.2
sp|Q9MZT9|MYC_TUPGL Myc proto-oncogene protein OS=Tupaia glis GN... 30 6.8
sp|O02607|AROC_TOXGO Chorismate synthase OS=Toxoplasma gondii GN... 30 6.8
sp|Q7M841|AROC_WOLSU Chorismate synthase OS=Wolinella succinogen... 30 8.8
sp|Q8A602|AROC_BACTN Chorismate synthase OS=Bacteroides thetaiot... 30 8.8

>sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster
GN=Top2 PE=1 SV=1
Length = 1447

Score = 42.7 bits (99), Expect = 0.001
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336
+ +E LR+ TP+ LW+ DL+ALE++L +V+E E A+E+ + +K G+ S ++
Sbjct: 1151 SELESLRKKTPEMLWLDDLDALESKLNEVEEKERAEEQGINLKTAKALKGQKSASAKGRK 1210

Query: 335 KDTGRGG 315
+ GG
Sbjct: 1211 VKSMGGG 1217


>sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana
GN=TOP2 PE=2 SV=2
Length = 1473

Score = 41.6 bits (96), Expect = 0.002
Identities = 18/59 (30%), Positives = 37/59 (62%)
Frame = -1

Query: 509 SVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQK 333
+V ++++ TPKSLW+ DLE+L+ +L+ +L++AQ + KK ++ + K++
Sbjct: 1146 AVADMKKTTPKSLWLSDLESLDKELEKLDLKDAQVQQAIEAAQKKIRAKSGAAVKVKRQ 1204


>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 OS=Schizosaccharomyces pombe
GN=top2 PE=1 SV=2
Length = 1485

Score = 35.4 bits (80), Expect = 0.16
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQL-----DVQE--LEEAQEEYDGRQLSKKRP 369
A ++ L + TPK LW+ DL+A E+ D+Q LEE Q D +KK+P
Sbjct: 1177 AELDALIKKTPKELWLHDLDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKP 1231


>sp|P41516|TOP2A_RAT DNA topoisomerase 2-alpha OS=Rattus norvegicus
GN=Top2a PE=2 SV=1
Length = 1526

Score = 35.0 bits (79), Expect = 0.21
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1

Query: 515 EASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDG 393
E + L++ TP LW DL A +L+V E +E Q+E G
Sbjct: 1149 EQELNTLKKKTPSDLWKEDLAAFVEELEVVEAKEKQDEQVG 1189


>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A
PE=2 SV=1
Length = 1533

Score = 34.7 bits (78), Expect = 0.27
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1

Query: 515 EASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDG 393
E +E L+R +P LW DL A +L+ E +E Q+E G
Sbjct: 1152 EQELETLKRKSPSDLWKEDLAAFIEELEAVEAKEKQDEQIG 1192


>sp|O42130|TOP2A_CHICK DNA topoisomerase 2-alpha OS=Gallus gallus
GN=TOP2A PE=2 SV=2
Length = 1553

Score = 33.9 bits (76), Expect = 0.47
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1

Query: 515 EASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDG 393
+ +E+L+ +P LW DL A +LD E ++ Q+E G
Sbjct: 1144 DKELEDLKHKSPSDLWKEDLAAFVEELDAVEAKQMQDEMAG 1184


>sp|Q9Y8G8|TOP2_PENCH DNA topoisomerase 2 OS=Penicillium chrysogenum
GN=TOP2 PE=3 SV=1
Length = 1587

Score = 32.3 bits (72), Expect = 1.4
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1

Query: 515 EASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336
E ++ L + + + +W RDLE N+ Q EEA+ RQ GR T +K
Sbjct: 1171 ELEIDTLIKLSKEDIWKRDLEDFINEWRFQNDEEAR-----RQRKVANMGR---RTSSKL 1222

Query: 335 KDTGRGG 315
TGRGG
Sbjct: 1223 MTTGRGG 1229


>sp|P11388|TOP2A_HUMAN DNA topoisomerase 2-alpha OS=Homo sapiens
GN=TOP2A PE=1 SV=3
Length = 1531

Score = 32.0 bits (71), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1

Query: 515 EASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDG 393
E ++ L+R +P LW DL +L+ E +E Q+E G
Sbjct: 1152 EQELDTLKRKSPSDLWKEDLATFIEELEAVEAKEKQDEQVG 1192


>sp|P33485|VNUA_SUHVK Probable nuclear antigen OS=Suid herpesvirus 1
(strain Kaplan) PE=4 SV=1
Length = 1733

Score = 31.6 bits (70), Expect = 2.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3

Query: 141 G*NGLYGSRPPEAKACGSSCLEGWRLPETYIWMCSWLRGRQGRQ 10
G G +GS PP + CG C W+C W RG + R+
Sbjct: 1600 GGGGGWGSGPPPCRRCGHRC-----------WLCWWRRGPRPRR 1632


>sp|O24308|TOP2_PEA DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2
SV=1
Length = 1462

Score = 31.6 bits (70), Expect = 2.3
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1

Query: 500 ELRRATPK-SLWIRDLEALENQLDVQELEEAQEEYD-GRQLSKKRPGRAPLSTPTKQ 336
E+ TP SLW++DL+ E +LD +L+ A+++ Q SKK G A S P K+
Sbjct: 1116 EILSGTPTTSLWLKDLDEFEKKLDELDLKYAEDDRKRASQGSKKANGFA--SKPAKK 1170


tr_hit_id Q2L363
Definition tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica
Align length 59
Score (bit) 52.4
E-value 1.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP919828|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F03.
(518 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica GN... 52 1e-05
tr|Q8GSC4|Q8GSC4_TOBAC DNA topoisomerase 2 OS=Nicotiana tabacum ... 51 4e-05
tr|A7Q269|A7Q269_VITVI DNA topoisomerase 2 OS=Vitis vinifera GN=... 50 7e-05
tr|A2X8M2|A2X8M2_ORYSI DNA topoisomerase 2 OS=Oryza sativa subsp... 49 2e-04
tr|Q6Z8D9|Q6Z8D9_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp... 47 7e-04
tr|A9RWX5|A9RWX5_PHYPA DNA topoisomerase 2 (Fragment) OS=Physcom... 47 7e-04
tr|A3AAF2|A3AAF2_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp... 47 7e-04
tr|B4I5V4|B4I5V4_DROSE Top2 OS=Drosophila sechellia GN=Top2 PE=4... 45 0.002
tr|B3NM53|B3NM53_DROER GG21630 OS=Drosophila erecta GN=GG21630 P... 45 0.002
tr|Q6NR40|Q6NR40_DROME DNA topoisomerase 2 OS=Drosophila melanog... 43 0.011
tr|B4PAY8|B4PAY8_DROYA GE12650 OS=Drosophila yakuba GN=GE12650 P... 42 0.018
tr|B3H4G2|B3H4G2_ARATH Uncharacterized protein At3g23890.2 OS=Ar... 42 0.024
tr|A9SRT5|A9SRT5_PHYPA DNA topoisomerase 2 (Fragment) OS=Physcom... 39 0.20
tr|A4S645|A4S645_OSTLU DNA topoisomerase 2 OS=Ostreococcus lucim... 39 0.20
tr|B6K8S1|B6K8S1_TOXGO DNA topoisomerase II, putative OS=Toxopla... 39 0.20
tr|B3MN65|B3MN65_DROAN GF15632 OS=Drosophila ananassae GN=GF1563... 39 0.20
tr|B8C9L4|B8C9L4_THAPS DNA topoisomerase OS=Thalassiosira pseudo... 37 0.45
tr|Q4JF74|Q4JF74_SCUBA DNA topoisomerase 2 OS=Scutellaria baical... 37 0.59
tr|Q29K53|Q29K53_DROPS DNA topoisomerase 2 OS=Drosophila pseudoo... 37 0.59
tr|B4GWX0|B4GWX0_DROPE GL21103 OS=Drosophila persimilis GN=GL211... 37 0.59
tr|B6K4K4|B6K4K4_SCHJP DNA topoisomerase OS=Schizosaccharomyces ... 37 0.59
tr|B4KIH0|B4KIH0_DROMO GI19824 OS=Drosophila mojavensis GN=GI198... 37 0.77
tr|B5PMN4|B5PMN4_SALET High-affinity nickel transport protein OS... 36 1.0
tr|Q6Y3N7|Q6Y3N7_9TRYP DNA topoisomerase 2 OS=Blastocrithidia cu... 35 1.7
tr|A7RUU3|A7RUU3_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 2.2
tr|Q9FA48|Q9FA48_SALTY Putative nickel transporter OS=Salmonella... 34 3.8
tr|B5QUJ2|B5QUJ2_SALEP Putative cation transporter OS=Salmonella... 34 3.8
tr|B5FS79|B5FS79_SALDC High-affinity nickel transport protein OS... 34 3.8
tr|B4TSW2|B4TSW2_SALSV High-affinity nickel transport protein OS... 34 3.8
tr|B4TEW7|B4TEW7_SALHS High-affinity nickel transport protein OS... 34 3.8

>tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica
GN=Md49N23_TopII.010 PE=3 SV=1
Length = 1467

Score = 52.4 bits (124), Expect = 1e-05
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336
A V+ELR++TP+SLW++DL+ALE +LDV E EA E + ++ ++ + P S +KQ
Sbjct: 1104 AEVDELRKSTPRSLWLKDLDALEMELDVLEKSEALAE-EAKKKARTQVKNVPASKASKQ 1161


>tr|Q8GSC4|Q8GSC4_TOBAC DNA topoisomerase 2 OS=Nicotiana tabacum PE=2
SV=1
Length = 1482

Score = 50.8 bits (120), Expect = 4e-05
Identities = 25/58 (43%), Positives = 34/58 (58%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTP 345
L VE++R ATPK LW++DL+ LE QLD Q+ + Q E ++ KK A L P
Sbjct: 1127 LNGEVEDMRNATPKLLWLKDLDVLEKQLDEQDKIDIQAEEAREKIKKKVMNAAGLKAP 1184


>tr|A7Q269|A7Q269_VITVI DNA topoisomerase 2 OS=Vitis vinifera
GN=GSVIVT00028763001 PE=3 SV=1
Length = 1489

Score = 50.1 bits (118), Expect = 7e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKK 375
L V++L++ATPK+LWI DL+ALE +LD Q+ +A+ E +QL +
Sbjct: 1137 LNKGVDDLKKATPKALWITDLDALERELDEQDKNDARAEETRKQLKSR 1184


>tr|A2X8M2|A2X8M2_ORYSI DNA topoisomerase 2 OS=Oryza sativa subsp.
indica GN=OsI_08583 PE=3 SV=1
Length = 1486

Score = 48.5 bits (114), Expect = 2e-04
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339
+E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP + P +
Sbjct: 1123 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPKAAPKR 1182

Query: 338 Q 336
+
Sbjct: 1183 R 1183


>tr|Q6Z8D9|Q6Z8D9_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp.
japonica GN=P0459B01.29 PE=3 SV=1
Length = 1525

Score = 46.6 bits (109), Expect = 7e-04
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339
+E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP K
Sbjct: 1161 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPNKAAPK 1220

Query: 338 QK 333
++
Sbjct: 1221 RR 1222


>tr|A9RWX5|A9RWX5_PHYPA DNA topoisomerase 2 (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_120620 PE=3 SV=1
Length = 1238

Score = 46.6 bits (109), Expect = 7e-04
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEE-YDGRQLSKKRPGRAPLSTPT 342
+E VEEL+RATP++LWI+DL+ +LD QE +EA + Y+ + +K+ P
Sbjct: 1134 MEEEVEELKRATPEALWIKDLDEFLVKLDAQEEQEAIDAVYEAKHSAKEGNQTFKKPAPR 1193

Query: 341 KQ 336
KQ
Sbjct: 1194 KQ 1195


>tr|A3AAF2|A3AAF2_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp.
japonica GN=OsJ_007774 PE=3 SV=1
Length = 1487

Score = 46.6 bits (109), Expect = 7e-04
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = -1

Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339
+E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP K
Sbjct: 1123 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPNKAAPK 1182

Query: 338 QK 333
++
Sbjct: 1183 RR 1184


>tr|B4I5V4|B4I5V4_DROSE Top2 OS=Drosophila sechellia GN=Top2 PE=4 SV=1
Length = 1448

Score = 45.1 bits (105), Expect = 0.002
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTP-TK 339
+ +E LR+ TP+ LW+ DL+ALE++L +V++ E +E+ + +K G+ +ST K
Sbjct: 1151 SELENLRKKTPEMLWLDDLDALESKLNEVEQKERVEEQGINLKTAKALKGQKSVSTKGRK 1210

Query: 338 QKDTGRG 318
K TG G
Sbjct: 1211 AKSTGSG 1217


>tr|B3NM53|B3NM53_DROER GG21630 OS=Drosophila erecta GN=GG21630 PE=4
SV=1
Length = 1446

Score = 45.1 bits (105), Expect = 0.002
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336
+ +E LR+ TP+ LW+ DL+ALE +L +V+E E +E+ + +K G+ +ST ++
Sbjct: 1151 SELENLRKKTPELLWLDDLDALEAKLNEVEEKERLEEQGINLKTAKALKGQKSVSTKGRK 1210

Query: 335 KDTGRGG 315
T GG
Sbjct: 1211 VKTAAGG 1217


>tr|Q6NR40|Q6NR40_DROME DNA topoisomerase 2 OS=Drosophila melanogaster
GN=Top2 PE=2 SV=1
Length = 1157

Score = 42.7 bits (99), Expect = 0.011
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = -1

Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336
+ +E LR+ TP+ LW+ DL+ALE++L +V+E E A+E+ + +K G+ S ++
Sbjct: 1036 SELESLRKKTPEMLWLDDLDALESKLNEVEEKERAEEQGINLKTAKALKGQKSASAKGRK 1095

Query: 335 KDTGRGG 315
+ GG
Sbjct: 1096 VKSMGGG 1102