BP919828 |
Clone id |
YMU001_000129_F03 |
Library |
YMU01 |
Length |
538 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000129_F03. |
Accession |
BP919828 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GGGAGAATTCGCGGCCGCATTATTAGTTCCTGTCTTCCTTGCCTTCCACGGAGCCAGCTG CACATCCATATATACGTTTCCGGTAGACGCCATCCCTCGAGACAGCTGGATCCGCAAGCT TTCGCTTCCGGTGGACGCGATCCATAGAGACCATTTCACCCACATACTTATTTTGAGCAG CAGCAGATAAGGAGGGTGCCTTTGGCTTTCGTTTGGCTGCTTCCTTAAAATCACTATCAG AACTCTCATTGTATTCGTAGTCCTCATCTTCACTGTCCACAAGGTCTTGAACACACGCTG CTGCTGTTGTGGTGGGGGCTGGTACTTGTGCCAGCCCGCCTCTGCCAGTATCCTTTTGTT TTGTTGGAGTGCTCAAAGGAGCCCTCCCCGGTCTTTTCTTTGAAAGCTGTCTCCCATCGT ACTCTTCCTGCGCCTCCTCCAGCTCTTGAACATCCAGCTGATTCTCAAGAGCTTCCAGGT CTCTAATCCAAAGTGACTTTGGAGTCGCACGTCTAAGCTCCTCCACACTAGCTTCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P15348 |
Definition |
sp|P15348|TOP2_DROME DNA topoisomerase 2 OS=Drosophila melanogaster |
Align length |
67 |
Score (bit) |
42.7 |
E-value |
0.001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2L363 |
Definition |
tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica |
Align length |
59 |
Score (bit) |
52.4 |
E-value |
1.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP919828|Adiantum capillus-veneris mRNA, clone: YMU001_000129_F03. (518 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica GN... 52 1e-05 tr|Q8GSC4|Q8GSC4_TOBAC DNA topoisomerase 2 OS=Nicotiana tabacum ... 51 4e-05 tr|A7Q269|A7Q269_VITVI DNA topoisomerase 2 OS=Vitis vinifera GN=... 50 7e-05 tr|A2X8M2|A2X8M2_ORYSI DNA topoisomerase 2 OS=Oryza sativa subsp... 49 2e-04 tr|Q6Z8D9|Q6Z8D9_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp... 47 7e-04 tr|A9RWX5|A9RWX5_PHYPA DNA topoisomerase 2 (Fragment) OS=Physcom... 47 7e-04 tr|A3AAF2|A3AAF2_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp... 47 7e-04 tr|B4I5V4|B4I5V4_DROSE Top2 OS=Drosophila sechellia GN=Top2 PE=4... 45 0.002 tr|B3NM53|B3NM53_DROER GG21630 OS=Drosophila erecta GN=GG21630 P... 45 0.002 tr|Q6NR40|Q6NR40_DROME DNA topoisomerase 2 OS=Drosophila melanog... 43 0.011 tr|B4PAY8|B4PAY8_DROYA GE12650 OS=Drosophila yakuba GN=GE12650 P... 42 0.018 tr|B3H4G2|B3H4G2_ARATH Uncharacterized protein At3g23890.2 OS=Ar... 42 0.024 tr|A9SRT5|A9SRT5_PHYPA DNA topoisomerase 2 (Fragment) OS=Physcom... 39 0.20 tr|A4S645|A4S645_OSTLU DNA topoisomerase 2 OS=Ostreococcus lucim... 39 0.20 tr|B6K8S1|B6K8S1_TOXGO DNA topoisomerase II, putative OS=Toxopla... 39 0.20 tr|B3MN65|B3MN65_DROAN GF15632 OS=Drosophila ananassae GN=GF1563... 39 0.20 tr|B8C9L4|B8C9L4_THAPS DNA topoisomerase OS=Thalassiosira pseudo... 37 0.45 tr|Q4JF74|Q4JF74_SCUBA DNA topoisomerase 2 OS=Scutellaria baical... 37 0.59 tr|Q29K53|Q29K53_DROPS DNA topoisomerase 2 OS=Drosophila pseudoo... 37 0.59 tr|B4GWX0|B4GWX0_DROPE GL21103 OS=Drosophila persimilis GN=GL211... 37 0.59 tr|B6K4K4|B6K4K4_SCHJP DNA topoisomerase OS=Schizosaccharomyces ... 37 0.59 tr|B4KIH0|B4KIH0_DROMO GI19824 OS=Drosophila mojavensis GN=GI198... 37 0.77 tr|B5PMN4|B5PMN4_SALET High-affinity nickel transport protein OS... 36 1.0 tr|Q6Y3N7|Q6Y3N7_9TRYP DNA topoisomerase 2 OS=Blastocrithidia cu... 35 1.7 tr|A7RUU3|A7RUU3_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 2.2 tr|Q9FA48|Q9FA48_SALTY Putative nickel transporter OS=Salmonella... 34 3.8 tr|B5QUJ2|B5QUJ2_SALEP Putative cation transporter OS=Salmonella... 34 3.8 tr|B5FS79|B5FS79_SALDC High-affinity nickel transport protein OS... 34 3.8 tr|B4TSW2|B4TSW2_SALSV High-affinity nickel transport protein OS... 34 3.8 tr|B4TEW7|B4TEW7_SALHS High-affinity nickel transport protein OS... 34 3.8
>tr|Q2L363|Q2L363_MALDO DNA topoisomerase 2 OS=Malus domestica GN=Md49N23_TopII.010 PE=3 SV=1 Length = 1467
Score = 52.4 bits (124), Expect = 1e-05 Identities = 26/59 (44%), Positives = 41/59 (69%) Frame = -1
Query: 512 ASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336 A V+ELR++TP+SLW++DL+ALE +LDV E EA E + ++ ++ + P S +KQ Sbjct: 1104 AEVDELRKSTPRSLWLKDLDALEMELDVLEKSEALAE-EAKKKARTQVKNVPASKASKQ 1161
>tr|Q8GSC4|Q8GSC4_TOBAC DNA topoisomerase 2 OS=Nicotiana tabacum PE=2 SV=1 Length = 1482
Score = 50.8 bits (120), Expect = 4e-05 Identities = 25/58 (43%), Positives = 34/58 (58%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTP 345 L VE++R ATPK LW++DL+ LE QLD Q+ + Q E ++ KK A L P Sbjct: 1127 LNGEVEDMRNATPKLLWLKDLDVLEKQLDEQDKIDIQAEEAREKIKKKVMNAAGLKAP 1184
>tr|A7Q269|A7Q269_VITVI DNA topoisomerase 2 OS=Vitis vinifera GN=GSVIVT00028763001 PE=3 SV=1 Length = 1489
Score = 50.1 bits (118), Expect = 7e-05 Identities = 22/48 (45%), Positives = 34/48 (70%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKK 375 L V++L++ATPK+LWI DL+ALE +LD Q+ +A+ E +QL + Sbjct: 1137 LNKGVDDLKKATPKALWITDLDALERELDEQDKNDARAEETRKQLKSR 1184
>tr|A2X8M2|A2X8M2_ORYSI DNA topoisomerase 2 OS=Oryza sativa subsp. indica GN=OsI_08583 PE=3 SV=1 Length = 1486
Score = 48.5 bits (114), Expect = 2e-04 Identities = 22/61 (36%), Positives = 36/61 (59%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339 +E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP + P + Sbjct: 1123 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPKAAPKR 1182
Query: 338 Q 336 + Sbjct: 1183 R 1183
>tr|Q6Z8D9|Q6Z8D9_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp. japonica GN=P0459B01.29 PE=3 SV=1 Length = 1525
Score = 46.6 bits (109), Expect = 7e-04 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339 +E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP K Sbjct: 1161 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPNKAAPK 1220
Query: 338 QK 333 ++ Sbjct: 1221 RR 1222
>tr|A9RWX5|A9RWX5_PHYPA DNA topoisomerase 2 (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_120620 PE=3 SV=1 Length = 1238
Score = 46.6 bits (109), Expect = 7e-04 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEE-YDGRQLSKKRPGRAPLSTPT 342 +E VEEL+RATP++LWI+DL+ +LD QE +EA + Y+ + +K+ P Sbjct: 1134 MEEEVEELKRATPEALWIKDLDEFLVKLDAQEEQEAIDAVYEAKHSAKEGNQTFKKPAPR 1193
Query: 341 KQ 336 KQ Sbjct: 1194 KQ 1195
>tr|A3AAF2|A3AAF2_ORYSJ DNA topoisomerase 2 OS=Oryza sativa subsp. japonica GN=OsJ_007774 PE=3 SV=1 Length = 1487
Score = 46.6 bits (109), Expect = 7e-04 Identities = 22/62 (35%), Positives = 35/62 (56%) Frame = -1
Query: 518 LEASVEELRRATPKSLWIRDLEALENQLDVQELEEAQEEYDGRQLSKKRPGRAPLSTPTK 339 +E V EL+R PKSLW+RDL+A E +LD + +++ + + R G AP K Sbjct: 1123 MENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDSMDAEERRATRNAGGGAAPNKAAPK 1182
Query: 338 QK 333 ++ Sbjct: 1183 RR 1184
>tr|B4I5V4|B4I5V4_DROSE Top2 OS=Drosophila sechellia GN=Top2 PE=4 SV=1 Length = 1448
Score = 45.1 bits (105), Expect = 0.002 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 2/67 (2%) Frame = -1
Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTP-TK 339 + +E LR+ TP+ LW+ DL+ALE++L +V++ E +E+ + +K G+ +ST K Sbjct: 1151 SELENLRKKTPEMLWLDDLDALESKLNEVEQKERVEEQGINLKTAKALKGQKSVSTKGRK 1210
Query: 338 QKDTGRG 318 K TG G Sbjct: 1211 AKSTGSG 1217
>tr|B3NM53|B3NM53_DROER GG21630 OS=Drosophila erecta GN=GG21630 PE=4 SV=1 Length = 1446
Score = 45.1 bits (105), Expect = 0.002 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = -1
Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336 + +E LR+ TP+ LW+ DL+ALE +L +V+E E +E+ + +K G+ +ST ++ Sbjct: 1151 SELENLRKKTPELLWLDDLDALEAKLNEVEEKERLEEQGINLKTAKALKGQKSVSTKGRK 1210
Query: 335 KDTGRGG 315 T GG Sbjct: 1211 VKTAAGG 1217
>tr|Q6NR40|Q6NR40_DROME DNA topoisomerase 2 OS=Drosophila melanogaster GN=Top2 PE=2 SV=1 Length = 1157
Score = 42.7 bits (99), Expect = 0.011 Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = -1
Query: 512 ASVEELRRATPKSLWIRDLEALENQL-DVQELEEAQEEYDGRQLSKKRPGRAPLSTPTKQ 336 + +E LR+ TP+ LW+ DL+ALE++L +V+E E A+E+ + +K G+ S ++ Sbjct: 1036 SELESLRKKTPEMLWLDDLDALESKLNEVEEKERAEEQGINLKTAKALKGQKSASAKGRK 1095
Query: 335 KDTGRGG 315 + GG Sbjct: 1096 VKSMGGG 1102
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