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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP919833
Clone id YMU001_000129_F08
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000129_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTGGTCAGAGTTAATACATTAGGTGTCTACGCACTGTGTTCTCC
ATATCATTCCTGTCATCATATCTTTAAATTTTCCTATAGCTTCCTTTTAGACCTTCGTTT
ACAGGAATCTAGATCATTTATGAATTTTACAGTACAGTACAATTATCGCTTGCAACCATA
CTTTTATCCAAGCTATATACTCCAAATCCTACGAAGGCCTTGTGTGGCTGAGAAGGCCAC
AAGTTCGTTAGAATCTCCGCTTACATCACTATTTTTTGCAGTTGGATCTACATCACTGAC
AGGACACATGCTGTGCACCCAACCTCATGGCCATCTCCACTAAGCATTCTAAAACAAATT
GTTTCCCTAATTTAGGCTGTTGACCAAGCTTCTCATCATGAAACCTTGCAAGTAGACTGC
AAAGGATCACACCCTTCA
■■Homology search results ■■ -
sp_hit_id P51825
Definition sp|P51825|AFF1_HUMAN AF4/FMR2 family member 1 OS=Homo sapiens
Align length 64
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919833|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F08.
         (420 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P51825|AFF1_HUMAN AF4/FMR2 family member 1 OS=Homo sapiens GN...    30   3.8  
sp|Q8RCH7|HUTI_THETN Imidazolonepropionase OS=Thermoanaerobacter...    30   5.0  

>sp|P51825|AFF1_HUMAN AF4/FMR2 family member 1 OS=Homo sapiens GN=AFF1
            PE=1 SV=1
          Length = 1210

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 95   LRLQESRSFMNFTVQYNYRLQPYFYPSYILQILRRPCVAEKATSSLESPLTSLFFAVGST 274
            L +   R   +  ++Y+  L  +F  S  +     PC+A   T S  SP+ S   +VGS 
Sbjct: 1058 LNMAMFRCKKDIAIKYSRTLNKHFESSSKVAQAPSPCIASTGTPSPLSPMPSPASSVGSQ 1117

Query: 275  SLTG 286
            S  G
Sbjct: 1118 SSAG 1121


>sp|Q8RCH7|HUTI_THETN Imidazolonepropionase OS=Thermoanaerobacter
           tengcongensis GN=hutI PE=3 SV=1
          Length = 415

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166 LSKLYTPNPTKALCG*EGHKFVRI-SAYITI 255
           +SK+YTP  TK LCG +  K   I +AYI I
Sbjct: 10  ISKIYTPIGTKPLCGEDMEKIEEIENAYIAI 40
tr_hit_id A9IAJ5
Definition tr|A9IAJ5|A9IAJ5_BORPD Putative uncharacterized protein OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
Align length 95
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP919833|Adiantum capillus-veneris mRNA, clone:
YMU001_000129_F08.
         (420 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9IAJ5|A9IAJ5_BORPD Putative uncharacterized protein OS=Borde...    39   0.17 
tr|A9C325|A9C325_DELAS Putative uncharacterized protein OS=Delft...    38   0.22 
tr|B8L653|B8L653_9GAMM Putative uncharacterized protein OS=Steno...    37   0.49 
tr|Q92GZ4|Q92GZ4_RICCN Putative permease perM homolog OS=Rickett...    33   9.2  
tr|B0BUM5|B0BUM5_RICRO Permease OS=Rickettsia rickettsii (strain...    33   9.2  
tr|A8GT35|A8GT35_RICRS Putative uncharacterized protein OS=Ricke...    33   9.2  
tr|Q7P9A4|Q7P9A4_RICSI Putative permease perM homolog OS=Rickett...    33   9.2  
tr|A8PNL9|A8PNL9_9COXI Ankyrin repeat domain protein OS=Ricketts...    33   9.2  

>tr|A9IAJ5|A9IAJ5_BORPD Putative uncharacterized protein
           OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
           CCUG 43448) GN=Bpet4246 PE=4 SV=1
          Length = 587

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 29/95 (30%), Positives = 39/95 (41%)
 Frame = +2

Query: 23  VYALCSPYHSCHHIFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILRRP 202
           VY  C PY     I     +  L+L L+ES+ + +F V+YN  L   F   Y L I+   
Sbjct: 451 VYLQCEPYEDAGVIQDLRINVKLNLNLEESKGYSSFGVEYN-ELDITFTDGYSLYIVE-- 507

Query: 203 CVAEKATSSLESPLTSLFFAVGSTSLTGHMLCTQP 307
           C A   T      L +L    G     G + C  P
Sbjct: 508 CKAGNVTQEQIMKLQNLVRFYGGIEGRGIVACCVP 542


>tr|A9C325|A9C325_DELAS Putative uncharacterized protein OS=Delftia
           acidovorans (strain DSM 14801 / SPH-1) GN=Daci_4198 PE=4
           SV=1
          Length = 360

 Score = 38.1 bits (87), Expect = 0.22
 Identities = 28/95 (29%), Positives = 39/95 (41%)
 Frame = +2

Query: 23  VYALCSPYHSCHHIFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILRRP 202
           VY  C PY     I     +  L+L L+ES+ + +F V+YN  L   F   Y L ++   
Sbjct: 224 VYLQCKPYEDAGVIQDLRINVKLNLNLEESKGYSSFGVEYN-ELDITFTDGYSLYVVE-- 280

Query: 203 CVAEKATSSLESPLTSLFFAVGSTSLTGHMLCTQP 307
           C A   T      L +L    G     G + C  P
Sbjct: 281 CKAGNVTQEQIMKLQNLVRFYGGIEGRGIVACCVP 315


>tr|B8L653|B8L653_9GAMM Putative uncharacterized protein
           OS=Stenotrophomonas sp. SKA14 GN=SSKA14_1817 PE=4 SV=1
          Length = 598

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 28/92 (30%), Positives = 38/92 (41%)
 Frame = +2

Query: 23  VYALCSPYHSCHHIFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILRRP 202
           VY  C PY     I     +  L+L L+ES+ + +F V+YN  L   F   Y L I+   
Sbjct: 462 VYLQCKPYEDAGVIQDLRINVKLNLNLEESKGYSSFGVEYN-ELDITFTDGYSLYIVE-- 518

Query: 203 CVAEKATSSLESPLTSLFFAVGSTSLTGHMLC 298
           C A   T      L +L    G     G + C
Sbjct: 519 CKAGNVTQEQIMKLQNLVRFYGGIEGRGIVAC 550


>tr|Q92GZ4|Q92GZ4_RICCN Putative permease perM homolog OS=Rickettsia
           conorii GN=perM PE=4 SV=1
          Length = 356

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62  IFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILR-RPCVAEKATSSLES 238
           IF  S + L+ +   +  +F+N   +YN  LQ    P  +++I    P +A+K  +SL +
Sbjct: 73  IFFLSLTILVPIIYGQIFTFINNIPKYNNYLQTEILPPIMVKIYSIEPDIADKIKNSLSN 132

Query: 239 PLTSLFFAVGS 271
            + S+F  +GS
Sbjct: 133 FINSIFTILGS 143


>tr|B0BUM5|B0BUM5_RICRO Permease OS=Rickettsia rickettsii (strain
           Iowa) GN=RrIowa_1157 PE=4 SV=1
          Length = 356

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62  IFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILR-RPCVAEKATSSLES 238
           IF  S + L+ +   +  +F+N   +YN  LQ    P  +++I    P +A+K  +SL +
Sbjct: 73  IFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEILPPIMVKIYSIEPDIADKIKNSLSN 132

Query: 239 PLTSLFFAVGS 271
            + S+F  +GS
Sbjct: 133 FINSIFTILGS 143


>tr|A8GT35|A8GT35_RICRS Putative uncharacterized protein
           OS=Rickettsia rickettsii (strain Sheila Smith)
           GN=A1G_05375 PE=4 SV=1
          Length = 351

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62  IFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILR-RPCVAEKATSSLES 238
           IF  S + L+ +   +  +F+N   +YN  LQ    P  +++I    P +A+K  +SL +
Sbjct: 68  IFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEILPPIMVKIYSIEPDIADKIKNSLSN 127

Query: 239 PLTSLFFAVGS 271
            + S+F  +GS
Sbjct: 128 FINSIFTILGS 138


>tr|Q7P9A4|Q7P9A4_RICSI Putative permease perM homolog OS=Rickettsia
           sibirica 246 GN=rsib_orf.1126 PE=4 SV=1
          Length = 351

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +2

Query: 62  IFKFSYSFLLDLRLQESRSFMNFTVQYNYRLQPYFYPSYILQILR-RPCVAEKATSSLES 238
           IF  S + L+ +   +  +F+N   +YN  LQ    P  +++I    P +A+K  +SL +
Sbjct: 68  IFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEILPPIMVKIYSIEPDIADKIKNSLSN 127

Query: 239 PLTSLFFAVGS 271
            + S+F  +GS
Sbjct: 128 FINSIFTILGS 138


>tr|A8PNL9|A8PNL9_9COXI Ankyrin repeat domain protein
           OS=Rickettsiella grylli GN=RICGR_1042 PE=4 SV=1
          Length = 466

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/85 (23%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +2

Query: 47  HSCHHIFKFSYSFLLDLRLQ-ESRSFMNFTVQYNYRLQPYFYPSYILQI-LRRPCVAEKA 220
           ++C +++ F+ +F   L  + +SR F+N       R++ Y    Y+  + +RR  V   +
Sbjct: 274 YACRNLYAFNEAFCKQLMYRRQSREFLN------KRIKQYLDLVYMTNLPIRRQRVGNCS 327

Query: 221 TSSLESPLTSLFFAVGSTSLTGHML 295
            +++E+ + ++ F + S +  GH+L
Sbjct: 328 WANIEASIPAMLFMLESVNKEGHLL 352